View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6704_high_3 (Length: 357)

Name: NF6704_high_3
Description: NF6704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6704_high_3
NF6704_high_3
[»] chr1 (1 HSPs)
chr1 (1-321)||(5130934-5131255)
[»] chr7 (3 HSPs)
chr7 (31-322)||(48361469-48361764)
chr7 (100-149)||(35780079-35780128)
chr7 (31-63)||(35780022-35780054)
[»] chr4 (1 HSPs)
chr4 (89-322)||(9443353-9443587)
[»] chr5 (13 HSPs)
chr5 (92-273)||(2856553-2856738)
chr5 (92-273)||(2874163-2874348)
chr5 (89-319)||(1599920-1600151)
chr5 (26-322)||(8529132-8529426)
chr5 (89-316)||(8641635-8641863)
chr5 (92-149)||(2844854-2844911)
chr5 (89-149)||(9074517-9074577)
chr5 (2-149)||(8644377-8644524)
chr5 (100-149)||(2904797-2904846)
chr5 (89-149)||(8547897-8547957)
chr5 (95-273)||(9003724-9003903)
chr5 (26-63)||(8535690-8535727)
chr5 (31-63)||(1600180-1600212)
[»] scaffold0627 (1 HSPs)
scaffold0627 (31-63)||(4841-4873)
[»] chr6 (1 HSPs)
chr6 (27-63)||(16716536-16716572)


Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 5130934 - 5131255
Alignment:
Q  1 atgcaacattatggaaagaacatgcatcagaaatgtaaagcaatccctttaattctcccatgccgatatgctcggtgccataaaaatgattatgattttc 100  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  5130934 atgcaacattatggaaagaacacgcatcagaaatgtaaagaaatccctttaattctcccatgccgatatgctcggtgccataaaaatcattatgattttc 5131033  T
Q  101 aaacacatgtggaggagaagggaatgattgcaatctctcactttcaaaagt-aaacacaacaatgacctttttccaagatcatatatgatccaatgaagt 199  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||    
T  5131034 aaacacgtgtggaggagaagggaatgattgcaatctctcactttcaaaactgaaacacaacaatgacctttttctaagatcatatatgatccaatgaagt 5131133  T
Q  200 gtgtcattcacacaagtaggacactcaatcctcgaaatagaaatctgaagttccacttcaacttttctccatgacaattttccaagagtgtgtctctcaa 299  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||| ||||||    
T  5131134 gtgtcattcacacaagtaggacactcaagcctcgaaatagaaatctgaagatccacttcaacatttctccatgacaatgttccaagagtgtgtatctcaa 5131233  T
Q  300 ggatcccactctcaaactccca 321  Q
    ||||| ||| ||||||||||||    
T  5131234 ggatcacacgctcaaactccca 5131255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 31 - 322
Target Start/End: Complemental strand, 48361764 - 48361469
Alignment:
Q  31 aaatgtaaagcaatccctttaattctcccatgccgatatgctcggtgccataaaa---atgattatgattttcaaacacatgtggaggagaagggaatga 127  Q
    |||||||||| ||||||||||||||||||||||  ||||||  | | |||  ||    || |||||||||| |||||||||||||||||||||| |||||    
T  48361764 aaatgtaaagaaatccctttaattctcccatgctaatatgcctgttaccaagaattccattattatgatttccaaacacatgtggaggagaaggaaatga 48361665  T
Q  128 ttgcaatctctcactttcaaaa-gtaaacacaacaatgacctttttccaagatcatatatgatccaatgaagtgtgtcattcacacaagtaggacactca 226  Q
     ||||  |||||||||||||||   ||| |||| | ||||||||    |   ||| || | |||||||||||||   ||||||||||||| ||| ||||     
T  48361664 ctgcaccctctcactttcaaaacagaaaaacaatattgacctttgctgaccctcaaatcttatccaatgaagtgcaccattcacacaagtgggatactcg 48361565  T
Q  227 atcctcgaaatagaaatctgaagttccacttcaacttttctccatgacaattttccaagagtgtgtctctcaaggatcccactctcaaactcccac 322  Q
    |  ||||||| |||||| ||| | ||||||||||| || ||||| ||   | ||||||| |||| | ||||||||||| ||| |||||||||||||    
T  48361564 agactcgaaaaagaaatgtgaggatccacttcaacattcctccaggatggtgttccaagtgtgtttatctcaaggatcacacgctcaaactcccac 48361469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 149
Target Start/End: Original strand, 35780079 - 35780128
Alignment:
Q  100 caaacacatgtggaggagaagggaatgattgcaatctctcactttcaaaa 149  Q
    |||||||||||||||||||||| ||||  ||||| ||||||| |||||||    
T  35780079 caaacacatgtggaggagaaggaaatggctgcaacctctcaccttcaaaa 35780128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 63
Target Start/End: Original strand, 35780022 - 35780054
Alignment:
Q  31 aaatgtaaagcaatccctttaattctcccatgc 63  Q
    |||||||||| ||||||||||||||||||||||    
T  35780022 aaatgtaaagaaatccctttaattctcccatgc 35780054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 322
Target Start/End: Original strand, 9443353 - 9443587
Alignment:
Q  89 attatgattttcaaacacatgtggaggagaagggaatgattgcaatctctcactttcaaa--agtaaacacaacaatgacctttttccaagatcatatat 186  Q
    |||||||||| |||||||||||||||||||||| ||||| ||||| ||||||||||||||  || |||| ||| | ||||||||   ||   ||| || |    
T  9443353 attatgatttccaaacacatgtggaggagaaggaaatgactgcaacctctcactttcaaagcagaaaac-caatattgacctttgctcatcctcaaatct 9443451  T
Q  187 gatccaatgaagtgtgtcattcacacaagtaggacactcaatcctcgaaatagaaatctgaagttccacttcaacttttctccatgacaattttccaaga 286  Q
     |||||||||||||   ||||||||||||| ||| |||  |  ||||||| |||||| ||| | ||||||||||| |||||||| ||   | |||||||     
T  9443452 tatccaatgaagtgcaccattcacacaagtgggatactttagactcgaaaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagt 9443551  T
Q  287 gtgtgtctctcaaggatcccactctcaaactcccac 322  Q
    |||| | ||||||||||| ||| ||||||| |||||    
T  9443552 gtgtttatctcaaggatcacacgctcaaacacccac 9443587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 92 - 273
Target Start/End: Complemental strand, 2856738 - 2856553
Alignment:
Q  92 atgattttcaaacacatgtggaggagaagggaatgattgcaatctctcactttcaaaagt-aaacacaacaatgacctt--tttccaag-atcatatatg 187  Q
    ||||||| |||||||||||||||||||||| || || ||||| ||||||||||||||| | |||||||| | |||| ||  || |||||  ||| ||||     
T  2856738 atgatttccaaacacatgtggaggagaaggaaacgactgcaacctctcactttcaaaattgaaacacaatattgacttttgttgccaagcttcaaatata 2856639  T
Q  188 atccaatgaagtgtgtcattcacacaagtaggacactcaatcctcgaaatagaaatctgaagttccacttcaacttttctccatga 273  Q
    ||||||||||||| | |||||||||| || |||  |  || | || ||| |||||| ||| | ||||||||||| |||||||||||    
T  2856638 atccaatgaagtgcgccattcacacatgttggattcaaaagcttcaaaaaagaaatttgaggatccacttcaacatttctccatga 2856553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 92 - 273
Target Start/End: Complemental strand, 2874348 - 2874163
Alignment:
Q  92 atgattttcaaacacatgtggaggagaagggaatgattgcaatctctcactttcaaaagt-aaacacaacaatgacctt--tttccaag-atcatatatg 187  Q
    ||||||| |||||||||||||||||||||| || || ||||| ||||||||||||||| | |||||||| | |||| ||  || |||||  ||| ||||     
T  2874348 atgatttccaaacacatgtggaggagaaggaaacgactgcaacctctcactttcaaaattgaaacacaatattgacttttgttgccaagcttcaaatata 2874249  T
Q  188 atccaatgaagtgtgtcattcacacaagtaggacactcaatcctcgaaatagaaatctgaagttccacttcaacttttctccatga 273  Q
    ||||||||||||| | |||||||||| || |||  |  || | || ||| |||||| ||| | ||||||||||| |||||||||||    
T  2874248 atccaatgaagtgcgccattcacacatgttggattcaaaagcttcaaaaaagaaatttgaggatccacttcaacatttctccatga 2874163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 89 - 319
Target Start/End: Complemental strand, 1600151 - 1599920
Alignment:
Q  89 attatgattttcaaacacatgtggaggagaagggaatgattgcaatctctcactttcaaa--agtaaacacaacaatgacctttttccaagatcatatat 186  Q
    |||||||||| ||||| |||||||||||||||| ||||| ||||| ||||||||||||||  || |||| ||| | |||| |||   ||   |||||| |    
T  1600151 attatgatttccaaactcatgtggaggagaaggaaatgactgcaacctctcactttcaaaacagaaaac-caatattgacatttgctcaccctcatatct 1600053  T
Q  187 gatccaatgaagtgtgtcattcacacaagtaggacactcaatcctcgaaatagaaatctgaagttccacttcaacttttctccatgacaattttccaaga 286  Q
     |||||||||||||   ||||||||||||| |||  || || | || ||| |||||| ||| | ||||||||||| |||||||| ||   | |||||||     
T  1600052 tatccaatgaagtgcaccattcacacaagtgggattcttaagcatccaaaaagaaatttgaggatccacttcaacatttctccaggatggtgttccaagt 1599953  T
Q  287 gtgtgtctctcaaggatcccactctcaaactcc 319  Q
    |||| | ||||||||||| || ||| |||||||    
T  1599952 gtgtttatctcaaggatcacaatcttaaactcc 1599920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 26 - 322
Target Start/End: Original strand, 8529132 - 8529426
Alignment:
Q  26 atcagaaatgtaaagcaatccctttaattctcccatgccgatatgctcggtgccataaaaatgattatgattttcaaacacatgtggaggagaagggaat 125  Q
    |||| ||||||| || ||||||||||||||||||||||  ||| ||    | | | |||||  |||||||||| |||||||||||||||||||||| ||     
T  8529132 atcacaaatgtatagaaatccctttaattctcccatgctaataggcc---tacaacaaaaaacattatgatttccaaacacatgtggaggagaaggaaac 8529228  T
Q  126 gattgcaatctctcactttcaaa--agtaaacacaacaatgacctttttccaagatcatatatgatccaatgaagtgtgtcattcacacaagtaggacac 223  Q
    || ||||| |||||| |||||||  || |||| ||| | ||||||||    |   ||| || | |||||||||||||   ||||||||||||| ||| ||    
T  8529229 gactgcaacctctcattttcaaagcagaaaac-caatattgacctttgctgaccctcaaatcttatccaatgaagtgcaccattcacacaagtgggatac 8529327  T
Q  224 tcaatcctcgaaatagaaatctgaagttccacttcaacttttctccatgacaattttccaagagtgtgtctctcaaggatcccactctcaaactcccac 322  Q
    |  |  ||||||| |||||| ||| | ||||||||||| |||||||| ||   | ||||||| |||| | ||||||||||| ||| ||||||| |||||    
T  8529328 tttagactcgaaaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtgtgtttatctcaaggatcacacgctcaaacacccac 8529426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 316
Target Start/End: Original strand, 8641635 - 8641863
Alignment:
Q  89 attatgattttcaaacacatgtggaggagaagggaatgattgcaatctctcactttcaaaagt-aaacacaacaatgacctttttccaagatcatatatg 187  Q
    |||||||||| |||||||||||||||||||||| ||| | | ||||||||||||||| |||   ||||| || | ||||||||   |    ||| || ||    
T  8641635 attatgatttccaaacacatgtggaggagaaggaaataacttcaatctctcactttccaaacagaaacataatattgacctttgctccccctcaaatttg 8641734  T
Q  188 atccaatgaagtgtgtcattcacacaagtaggacactcaatcctcgaaatagaaatctgaagttccacttcaacttttctccatgacaattttccaagag 287  Q
    || ||||||||      |||||||||||| ||| ||| ||  |||||||||||||||||| | ||||||||||| |||||||||||   |  |||||| |    
T  8641735 attcaatgaagaacactattcacacaagtgggatacttaagactcgaaatagaaatctgaggatccacttcaacatttctccatgatggtgctccaagtg 8641834  T
Q  288 tgtgtctctcaaggatcccactctcaaac 316  Q
    ||| | ||||||||||| ||| |||||||    
T  8641835 tgtttatctcaaggatcacacgctcaaac 8641863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 2844911 - 2844854
Alignment:
Q  92 atgattttcaaacacatgtggaggagaagggaatgattgcaatctctcactttcaaaa 149  Q
    ||||||| |||||||||||||||||||||| || || ||||| |||||||||||||||    
T  2844911 atgatttccaaacacatgtggaggagaaggaaacgactgcaacctctcactttcaaaa 2844854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 89 - 149
Target Start/End: Complemental strand, 9074577 - 9074517
Alignment:
Q  89 attatgattttcaaacacatgtggaggagaagggaatgattgcaatctctcactttcaaaa 149  Q
    |||||| ||| |||||||||| ||||||||||| ||||| ||||| |||||||||||||||    
T  9074577 attatggtttccaaacacatgcggaggagaaggaaatgactgcaacctctcactttcaaaa 9074517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 149
Target Start/End: Original strand, 8644377 - 8644524
Alignment:
Q  2 tgcaacattatggaaagaacatgcatcagaaatgtaaagcaatccctttaattctcccatgccgatatgctcggtgccataaaa---atgattatgattt 98  Q
    |||||||| | | |||||| ||| |||  |||||||||| |||||| |||||||||||||||  ||| ||||| | | |  |||   || ||| ||||||    
T  8644377 tgcaacatcacgaaaagaatatgtatcgcaaatgtaaagtaatccccttaattctcccatgcgaatacgctcgttacgacgaaatccattattttgattt 8644476  T
Q  99 tcaaacacatgtggaggagaagggaatgattgcaatctctcactttcaaaa 149  Q
    | ||||||   |||||||||||| ||||||||||| |||||||||||||||    
T  8644477 tgaaacac---tggaggagaaggaaatgattgcaacctctcactttcaaaa 8644524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 149
Target Start/End: Complemental strand, 2904846 - 2904797
Alignment:
Q  100 caaacacatgtggaggagaagggaatgattgcaatctctcactttcaaaa 149  Q
    |||||| ||||||||||||||| ||||||||||  |||||||||||||||    
T  2904846 caaacatatgtggaggagaaggaaatgattgcatcctctcactttcaaaa 2904797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 149
Target Start/End: Complemental strand, 8547957 - 8547897
Alignment:
Q  89 attatgattttcaaacacatgtggaggagaagggaatgattgcaatctctcactttcaaaa 149  Q
    |||||||||||||||||||  || ||||||||| |||||||| || ||||| |||||||||    
T  8547957 attatgattttcaaacacagatgaaggagaaggaaatgattgaaacctctctctttcaaaa 8547897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 273
Target Start/End: Original strand, 9003724 - 9003903
Alignment:
Q  95 attttcaaacacatgtggaggagaagggaatgattgcaatctctcactttcaaaagt-aaacacaacaatgacctttttccaagatcatatatgatccaa 193  Q
    ||||| ||| ||||||||||| ||||| || ||||| || |||||| |||| ||| | |||||||| | |||| |||    || |||| || ||||||||    
T  9003724 attttgaaaaacatgtggaggggaaggaaaagattggaacctctcattttccaaattgaaacacaatattgacatttgcagaaaatcaaatctgatccaa 9003823  T
Q  194 tgaagtgtgtcattcacacaagtaggacactcaatcctcgaaatagaaatctgaagttccacttcaacttttctccatga 273  Q
    ||||||| | ||||||||||||| ||| | | ||  ||| ||||||| |  ||| | ||||||||||| |||||||||||    
T  9003824 tgaagtgcgccattcacacaagtcggataattaagactccaaatagacagttgaggatccacttcaacatttctccatga 9003903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 63
Target Start/End: Original strand, 8535690 - 8535727
Alignment:
Q  26 atcagaaatgtaaagcaatccctttaattctcccatgc 63  Q
    |||| |||||||||| ||||||||||||||||||||||    
T  8535690 atcacaaatgtaaagaaatccctttaattctcccatgc 8535727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 63
Target Start/End: Complemental strand, 1600212 - 1600180
Alignment:
Q  31 aaatgtaaagcaatccctttaattctcccatgc 63  Q
    |||||||||| ||||||||||||||||||||||    
T  1600212 aaatgtaaagaaatccctttaattctcccatgc 1600180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 63
Target Start/End: Original strand, 4841 - 4873
Alignment:
Q  31 aaatgtaaagcaatccctttaattctcccatgc 63  Q
    |||||||||| ||||||||||||||||||||||    
T  4841 aaatgtaaagaaatccctttaattctcccatgc 4873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 16716536 - 16716572
Alignment:
Q  27 tcagaaatgtaaagcaatccctttaattctcccatgc 63  Q
    ||||||||||| || ||||||||||||||||||||||    
T  16716536 tcagaaatgtatagaaatccctttaattctcccatgc 16716572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University