View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6704_high_4 (Length: 298)

Name: NF6704_high_4
Description: NF6704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6704_high_4
NF6704_high_4
[»] chr1 (2 HSPs)
chr1 (2-108)||(36463378-36463490)
chr1 (141-244)||(32439547-32439649)
[»] chr3 (2 HSPs)
chr3 (110-232)||(30764214-30764337)
chr3 (141-244)||(46232940-46233042)
[»] chr4 (1 HSPs)
chr4 (185-273)||(32649984-32650072)
[»] scaffold0755 (1 HSPs)
scaffold0755 (141-244)||(3023-3125)
[»] chr2 (2 HSPs)
chr2 (185-279)||(2388420-2388513)
chr2 (141-244)||(9209568-9209670)
[»] chr7 (1 HSPs)
chr7 (141-244)||(16261627-16261729)
[»] chr8 (1 HSPs)
chr8 (148-244)||(12634947-12635043)


Alignment Details
Target: chr1 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 2 - 108
Target Start/End: Original strand, 36463378 - 36463490
Alignment:
Q  2 tccttgccataacaaaacaatcttaatca------tcatctctcgcatatatcacaatgctctatatttatcttgctaatttaaaacaatcatctgccta 95  Q
    ||||||||| |||||||||||||||||||      |||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  36463378 tccttgccacaacaaaacaatcttaatcatcatcatcatctctcgcagatatcacaatgctctatatttgtcttcctaatttaaaacaatcatctgccta 36463477  T
Q  96 cttgctcatgatt 108  Q
    |||||||||||||    
T  36463478 cttgctcatgatt 36463490  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 141 - 244
Target Start/End: Complemental strand, 32439649 - 32439547
Alignment:
Q  141 attcttctctttagcttattcacttatgtttttactttatgaactttgattttgtgcgattgatgtactcaattttataattttaccattcaatttttca 240  Q
    ||||||||||| | |||||||||| |||| |||| |||||| | ||||||||||||| ||||||| |||  ||||| ||||||||||||||||||||| |    
T  32439649 attcttctcttaa-cttattcactaatgtatttagtttatgtattttgattttgtgctattgatgcactttattttctaattttaccattcaatttttta 32439551  T
Q  241 tatt 244  Q
    ||||    
T  32439550 tatt 32439547  T

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Target: chr3 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 110 - 232
Target Start/End: Complemental strand, 30764337 - 30764214
Alignment:
Q  110 tgaatcacattgtggtt-actaaggtacttctattcttctctttagcttattcacttatgtttttactttatgaactttgattttgtgcgattgatgtac 208  Q
    |||||||| |||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||| ||| || | ||||||||||||| ||||||||||    
T  30764337 tgaatcacgttgtggtttactaaggtacttttattcttctctttagctcattcacttatgtttttagtttctgcaatttgattttgtgcaattgatgtac 30764238  T
Q  209 tcaattttataattttaccattca 232  Q
    | || ||||| |||||||||||||    
T  30764237 tgaaatttattattttaccattca 30764214  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 141 - 244
Target Start/End: Complemental strand, 46233042 - 46232940
Alignment:
Q  141 attcttctctttagcttattcacttatgtttttactttatgaactttgattttgtgcgattgatgtactcaattttataattttaccattcaatttttca 240  Q
    ||||||||||| | |||||||||| |||| |||| |||||| | ||||||||||||| ||||||| |||  ||||| ||||||||||||||| ||||| |    
T  46233042 attcttctcttaa-cttattcactaatgtatttagtttatgtattttgattttgtgctattgatgcactttattttctaattttaccattcagtttttta 46232944  T
Q  241 tatt 244  Q
    ||||    
T  46232943 tatt 46232940  T

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Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 185 - 273
Target Start/End: Complemental strand, 32650072 - 32649984
Alignment:
Q  185 tttgattttgtgcgattgatgtactcaattttataattttaccattcaatttttcatattgagaataagttttaattgcagtgtatccg 273  Q
    |||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||| | ||||  ||||||||||| ||||||||    
T  32650072 tttggttttgtgcgattgatgtactccatttcataattttaccattcaatttttcatattcataatattttttaattgcaatgtatccg 32649984  T

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Target: scaffold0755 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0755
Description:

Target: scaffold0755; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 141 - 244
Target Start/End: Original strand, 3023 - 3125
Alignment:
Q  141 attcttctctttagcttattcacttatgtttttactttatgaactttgattttgtgcgattgatgtactcaattttataattttaccattcaatttttca 240  Q
    ||||||||||| | |||||||||| |||| |||| |||||| | ||||||||||||| ||||||| |||  ||||| |||||||||||||||||||||||    
T  3023 attcttctcttaa-cttattcactaatgtatttagtttatgtattttgattttgtgctattgatgcactttattttctaattttaccattcaatttttca 3121  T
Q  241 tatt 244  Q
    ||||    
T  3122 tatt 3125  T

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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 185 - 279
Target Start/End: Complemental strand, 2388513 - 2388420
Alignment:
Q  185 tttgattttgtgcgattgatgtactcaattttataattttaccattcaatttttcatattgagaataagttttaattgcagtgtatccggataga 279  Q
    ||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||| | |||| | |||| ||| ||||||||||| ||||    
T  2388513 tttgattttgtgcgattgatgtactccgtttcataattttaccattcaatttttcatattcataatatggtttagttg-agtgtatccggttaga 2388420  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 141 - 244
Target Start/End: Original strand, 9209568 - 9209670
Alignment:
Q  141 attcttctctttagcttattcacttatgtttttactttatgaactttgattttgtgcgattgatgtactcaattttataattttaccattcaatttttca 240  Q
    ||||||||||| | |||||||||| |||| |||| |||||| | ||||||||||||| ||||||| |||  ||||| ||||||||||||||||||||| |    
T  9209568 attcttctcttaa-cttattcactaatgtatttagtttatgtattttgattttgtgctattgatgcactttattttctaattttaccattcaatttttta 9209666  T
Q  241 tatt 244  Q
    ||||    
T  9209667 tatt 9209670  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 141 - 244
Target Start/End: Complemental strand, 16261729 - 16261627
Alignment:
Q  141 attcttctctttagcttattcacttatgtttttactttatgaactttgattttgtgcgattgatgtactcaattttataattttaccattcaatttttca 240  Q
    ||||||||||| | |||||||||| |||| |||| |||||| | ||||||||||||| ||||||| |||  ||||| ||||||||||||||||||||| |    
T  16261729 attcttctcttaa-cttattcactaatgtatttagtttatgtattttgattttgtgctattgatgcactttattttctaattttaccattcaatttttta 16261631  T
Q  241 tatt 244  Q
    ||||    
T  16261630 tatt 16261627  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 244
Target Start/End: Complemental strand, 12635043 - 12634947
Alignment:
Q  148 tctttagcttattcacttatgtttttactttatgaactttgattttgtgcgattgatgtactcaattttataattttaccattcaatttttcatatt 244  Q
    ||||||||||||||| ||||| ||| | ||| || | | ||||| ||||| |||||| ||||| ||||||||||||||||||||||| ||| |||||    
T  12635043 tctttagcttattcatttatgctttcaatttctgtaatgtgattgtgtgctattgatttactctattttataattttaccattcaatatttgatatt 12634947  T

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