View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6704_low_13 (Length: 286)
Name: NF6704_low_13
Description: NF6704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6704_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 20555095 - 20555376
Alignment:
| Q |
1 |
cattgtatgatgctaacagtttaaccatttcaagaaagctacctctattttttgaactagatttttcatcacggcctctaaaagcacaagcttgaaaagt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||| ||| | |||||||||||||||| ||||||||| |
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| T |
20555095 |
cattgtatgatgctaacagtttaaccatttcaagaaatttacctctattttttgaagtaggtttttcgtcatgtcctctaaaagcacaagattgaaaagt |
20555194 |
T |
|
| Q |
101 |
gagccaacgaactgaatcgatagagcacctgagacgaagtctattatggaggatttgctcggaactttgctcattaagtgcaaatctgatgttcatagat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20555195 |
gagccaacgaactgaatcgatagagcacctgagacgaagtctattatggaggatttgctcggaactttgctcattaagtgcaaatctgatgttcatagat |
20555294 |
T |
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| Q |
201 |
tgattgaacaagtcttgagaagctttcactgcattattgtgagatgaacaaggactctctccaatatgtttatgaaaagcac |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
20555295 |
tgattgaacaagtcttgagaagctttcactgcattattgtgagatgaacaaggactctctccaatatgtttaagaaaagcac |
20555376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 1196852 - 1197129
Alignment:
| Q |
1 |
cattgtatgatgctaacagtttaaccatttcaagaaagctacctctattttttgaactagatttttcatcacggcctctaaaagcacaagcttgaaaagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||| |
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| T |
1196852 |
cattgtatgatgctaacagtttaaccatttcaagaaagttacctctattttttgaactaggtttttcgtcatggcctctaaaagcacaagcttgaaaagt |
1196951 |
T |
|
| Q |
101 |
gagccaacgaactgaatcgatagagcacctgagacgaagtctattatggaggatttgctcggaactttgctcattaagtgcaaatctgatgttcatagat |
200 |
Q |
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||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1196952 |
gaggcaacaaactgaatcaatagagcacctgagacgaagtctattatggaggatttgctcggaactttgctcattaagtgcaaatctgatgttcatagat |
1197051 |
T |
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| Q |
201 |
tgattgaacaagtcttgagaagctttcactgcattattgtgagatgaacaaggactctctccaatatgtttatgaaaa |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1197052 |
tgattgaacaagtcttgagaagctttcactgcattattgtgagatgaacaaggactctctccaatatgtttaagaaaa |
1197129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 1287178 - 1287459
Alignment:
| Q |
1 |
cattgtatgatgctaacagtttaaccatttcaagaaagctacctctattttttgaactagatttttcatcacggcctctaaaagcacaagcttgaaaagt |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||| |||||| ||| |||||||||||||||||||||||||||| |
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| T |
1287178 |
cattgtatgatgctaacaatttaaccatttcaagaaagttacctctattctttgaactaggtttttcgtcatggcctctaaaagcacaagcttgaaaagt |
1287277 |
T |
|
| Q |
101 |
gagccaacgaactgaatcgatagagcacctgagacgaagtctattatggaggatttgctcggaactttgctcattaagtgcaaatctgatgttcatagat |
200 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1287278 |
gaggcaacgaactgaatcgatagagcacctgagacgaagtatattatggaggatttgctcggaactttgctcattaagtgcaaatctgatgttcatagat |
1287377 |
T |
|
| Q |
201 |
tgattgaacaagtcttgagaagctttcactgcattattgtgagatgaacaaggactctctccaatatgtttatgaaaagcac |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1287378 |
tgattgaacaagtcttgagaagctttcactgcattattgtgagatgaacaaggactctctccaatatgtttaagaaaagcac |
1287459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 132 - 278
Target Start/End: Complemental strand, 27177882 - 27177736
Alignment:
| Q |
132 |
agacgaagtctattatggaggatttgctcggaactttgctcattaagtgcaaatctgatgttcatagattgattgaacaagtcttgagaagctttcactg |
231 |
Q |
| |
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|||||||||||||| ||||| ||||| ||| |||| | || | | || ||| |||||||| |||| |||||||||||||||||||| ||||||| | || |
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| T |
27177882 |
agacgaagtctattttggagaatttgatcgaaactattctaacttagggcatttctgatgtccatatattgattgaacaagtcttgaaaagcttttaatg |
27177783 |
T |
|
| Q |
232 |
cattattgtgagatgaacaaggactctctccaatatgtttatgaaaa |
278 |
Q |
| |
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||||||||||| ||| || |||||||||| ||||||| ||| ||||| |
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| T |
27177782 |
cattattgtgacatgtactaggactctcttcaatatgattaagaaaa |
27177736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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