View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6704_low_15 (Length: 246)

Name: NF6704_low_15
Description: NF6704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6704_low_15
NF6704_low_15
[»] chr3 (3 HSPs)
chr3 (1-190)||(32368336-32368525)
chr3 (145-235)||(32368534-32368625)
chr3 (36-113)||(18645741-18645818)
[»] chr4 (2 HSPs)
chr4 (25-235)||(26076348-26076559)
chr4 (36-113)||(5721971-5722048)
[»] chr2 (2 HSPs)
chr2 (18-140)||(12370874-12370994)
chr2 (1-98)||(3461271-3461368)
[»] chr7 (3 HSPs)
chr7 (1-148)||(5243245-5243396)
chr7 (1-71)||(35898170-35898240)
chr7 (19-98)||(296559-296638)
[»] chr1 (2 HSPs)
chr1 (67-235)||(4958422-4958591)
chr1 (18-113)||(44536499-44536594)
[»] scaffold0038 (1 HSPs)
scaffold0038 (18-71)||(48835-48888)
[»] chr6 (1 HSPs)
chr6 (18-71)||(28248673-28248726)
[»] chr8 (1 HSPs)
chr8 (31-131)||(1183007-1183107)


Alignment Details
Target: chr3 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 32368336 - 32368525
Alignment:
Q  1 tcacatgatgataaagtagtgactggttgtttcttagtgcaccatgagattgcatcatcatttaatttgaataggtagccataagtgcttctcctatcca 100  Q
    ||||||||||||| || ||||| ||||||| |||||||||||||||| |||||| ||||||| |||||||||||| ||||| |||| |||||||||||||    
T  32368336 tcacatgatgatagagcagtgattggttgtctcttagtgcaccatgaaattgcagcatcattgaatttgaataggcagccagaagtacttctcctatcca 32368435  T
Q  101 ttctatctccacatcagtctgaatcagagtatccctctagcttagcctctcttttcttgttagtagctggaaacatcaggccaaacttca 190  Q
    ||||||||||||| | ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||  |||||||||||    
T  32368436 ttctatctccacaccggtctgaatcagagtatccctctagcttagactctcctttcttgttagtagctggaaacatcgtgccaaacttca 32368525  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 145 - 235
Target Start/End: Original strand, 32368534 - 32368625
Alignment:
Q  145 gcctctcttttcttgttagtagctggaaacatcaggccaaacttcaagg-tcctttcacatttctcagtattcttttagctgcagcgagatg 235  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||| || ||||||||||| ||||||||||||||||||| ||| ||||||    
T  32368534 gcctctcctttcttgttagtagctggaaacatcagggcaaacttcagggttcctttcacatatctcagtattcttttagctacagtgagatg 32368625  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 113
Target Start/End: Original strand, 18645741 - 18645818
Alignment:
Q  36 agtgcaccatgagattgcatcatcatttaatttgaataggtagccataagtgcttctcctatccattctatctccaca 113  Q
    ||||||||| ||||||||| ||||||| |||||||| |  || ||  |||||||||||||||| |||  |||||||||    
T  18645741 agtgcaccaggagattgcagcatcattgaatttgaacacataacctaaagtgcttctcctatcaattagatctccaca 18645818  T

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Target: chr4 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 25 - 235
Target Start/End: Complemental strand, 26076559 - 26076348
Alignment:
Q  25 ggttgtttcttagtgcaccatgagattgcatcatcatttaatttgaataggtagccataagtgcttctcctatccattctatctccacatcagtctgaat 124  Q
    |||||||||||  ||||||||||||||||| || |||| || |||||||||||||||||||||||  ||||||||||| ||||| |||| ||||||||||    
T  26076559 ggttgtttctttttgcaccatgagattgcaacaccattgaacttgaataggtagccataagtgctcttcctatccattatatcttcacaccagtctgaat 26076460  T
Q  125 cagagtatccctctagcttagcctctcttttcttgttagtagctggaaacatcaggccaaacttcaaggt-cctttcacatttctcagtattcttttagc 223  Q
    |||||||||||||||  | ||| |||| |   || || | ||||||||| | ||||||||||||||| || |||||||||| ||||| ||||||||||||    
T  26076459 cagagtatccctctaattcagcttctcctactttatttgcagctggaaataacaggccaaacttcaatgtacctttcacatatctcaatattcttttagc 26076360  T
Q  224 tgcagcgagatg 235  Q
    ||||| ||||||    
T  26076359 tgcagtgagatg 26076348  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 113
Target Start/End: Original strand, 5721971 - 5722048
Alignment:
Q  36 agtgcaccatgagattgcatcatcatttaatttgaataggtagccataagtgcttctcctatccattctatctccaca 113  Q
    ||||||||| ||||||||| ||||||| |||||||| |  || ||  |||||||||||||||| |||  |||||||||    
T  5721971 agtgcaccaggagattgcagcatcattgaatttgaacacataacctaaagtgcttctcctatcaattagatctccaca 5722048  T

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Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 12370994 - 12370874
Alignment:
Q  18 agtgactggttgtttcttagtgcaccatgagattgcatcatcatttaatttgaataggtagccataagtgcttctcctatccattctatctccacatcag 117  Q
    |||||||||||||||||| |||||||||||||||||| || |||| || ||||||||||||| | | |||||| |||  ||||||||||||||||| |||    
T  12370994 agtgactggttgtttctttgtgcaccatgagattgcagcaccattgaacttgaataggtagctagaggtgcttttcc--tccattctatctccacaccag 12370897  T
Q  118 tctgaatcagagtatccctctag 140  Q
    |||||||||||||||||||||||    
T  12370896 tctgaatcagagtatccctctag 12370874  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 3461368 - 3461271
Alignment:
Q  1 tcacatgatgataaagtagtgactggttgtttcttagtgcaccatgagattgcatcatcatttaatttgaataggtagccataagtgcttctcctatc 98  Q
    ||||||||||| |  | |||||||||||| ||||| |||||||||||||||||| ||||||| |||||||| |  || ||  ||||||||||||||||    
T  3461368 tcacatgatgagagtgcagtgactggttgcttctttgtgcaccatgagattgcagcatcattgaatttgaacacataacctgaagtgcttctcctatc 3461271  T

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Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 5243396 - 5243245
Alignment:
Q  1 tcacatgatgataaagtagtgactggttgtttcttagtgcaccatgagattgcatcatcatttaatttgaatagg----tagccataagtgcttctccta 96  Q
    ||||||||||||| || | |||||||||| |||||||| ||||||||||||||||||||||| || ||||||| |    || ||| |||||||||| |||    
T  5243396 tcacatgatgatagagcattgactggttgcttcttagtacaccatgagattgcatcatcattgaacttgaataagtatatatccagaagtgcttcttcta 5243297  T
Q  97 tccattctatctccacatcagtctgaatcagagtatccctctagcttagcct 148  Q
    |||||||| | |||||| ||||| ||||| |||||||| |||||||||||||    
T  5243296 tccattctctatccacaccagtcagaatctgagtatccttctagcttagcct 5243245  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 35898240 - 35898170
Alignment:
Q  1 tcacatgatgataaagtagtgactggttgtttcttagtgcaccatgagattgcatcatcatttaatttgaa 71  Q
    ||||||||||| |  | |||||||||||| ||||| |||||||||||||||||| ||||||| ||||||||    
T  35898240 tcacatgatgagagtgcagtgactggttgcttctttgtgcaccatgagattgcagcatcattgaatttgaa 35898170  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 296638 - 296559
Alignment:
Q  19 gtgactggttgtttcttagtgcaccatgagattgcatcatcatttaatttgaataggtagccataagtgcttctcctatc 98  Q
    |||| |||||| ||||| |||||||| ||||||||| ||||||| |||||||| |  || ||  ||||||||||||||||    
T  296638 gtgattggttgcttcttggtgcaccaggagattgcagcatcattgaatttgaacacataacctgaagtgcttctcctatc 296559  T

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Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 67 - 235
Target Start/End: Original strand, 4958422 - 4958591
Alignment:
Q  67 ttgaataggtagccataagtgcttctcctatccattctatctccacatcagtctgaatcagagtatccctctagcttagcctctcttttcttgttagtag 166  Q
    ||||||||||||| | | |||||| | |||||||||||||||||||| |||||||||||||||||||||||||| | ||| |||| ||  ||||| | ||    
T  4958422 ttgaataggtagctaaaggtgctttttctatccattctatctccacaccagtctgaatcagagtatccctctagttcagcttctccttctttgtttgcag 4958521  T
Q  167 ctggaaacatcaggccaaacttcaaggt-cctttcacatttctcagtattcttttagctgcagcgagatg 235  Q
     ||| || | ||||||||||||||  || |||||||||| ||||| ||| ||||| ||||||| ||||||    
T  4958522 ttgggaataacaggccaaacttcagtgtgcctttcacatgtctcaatatcctttttgctgcagtgagatg 4958591  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 44536499 - 44536594
Alignment:
Q  18 agtgactggttgtttcttagtgcaccatgagattgcatcatcatttaatttgaataggtagccataagtgcttctcctatccattctatctccaca 113  Q
    ||||| |||||| ||||| |||||||| ||||||||| ||||||| |||||||| |  || ||  |||||||||||||||| |||  |||||||||    
T  44536499 agtgattggttgcttcttggtgcaccaggagattgcagcatcattgaatttgaacacataacctgaagtgcttctcctatcaattagatctccaca 44536594  T

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Target: scaffold0038 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 48888 - 48835
Alignment:
Q  18 agtgactggttgtttcttagtgcaccatgagattgcatcatcatttaatttgaa 71  Q
    |||||||||||| ||||| ||||||||||| |||||| ||||||| ||||||||    
T  48888 agtgactggttgcttcttggtgcaccatgaaattgcagcatcattgaatttgaa 48835  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 28248726 - 28248673
Alignment:
Q  18 agtgactggttgtttcttagtgcaccatgagattgcatcatcatttaatttgaa 71  Q
    |||||||||||| ||||| ||||||||||| |||||| ||||||| ||||||||    
T  28248726 agtgactggttgcttcttggtgcaccatgaaattgcagcatcattgaatttgaa 28248673  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 131
Target Start/End: Complemental strand, 1183107 - 1183007
Alignment:
Q  31 ttcttagtgcaccatgagattgcatcatcatttaatttgaataggtagccataagtgcttctcctatccattctatctccacatcagtctgaatcagagt 130  Q
    ||||| || |||||||| |||||| |||  || || ||||| |  |||||| | ||||||||||||||  |||||||| |||| || |||||||||||||    
T  1183107 ttctttgtacaccatgatattgcaacattgttgaacttgaagacatagccagatgtgcttctcctatcacttctatcttcacaccaatctgaatcagagt 1183008  T
Q  131 a 131  Q
    |    
T  1183007 a 1183007  T

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