View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6704_low_16 (Length: 240)

Name: NF6704_low_16
Description: NF6704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6704_low_16
NF6704_low_16
[»] chr5 (4 HSPs)
chr5 (20-159)||(42767374-42767513)
chr5 (22-159)||(16920253-16920390)
chr5 (20-159)||(37191841-37191979)
chr5 (42-74)||(19798043-19798075)
[»] chr4 (3 HSPs)
chr4 (20-159)||(11816113-11816252)
chr4 (42-110)||(43629872-43629940)
chr4 (55-141)||(53595346-53595432)
[»] chr1 (2 HSPs)
chr1 (20-159)||(29021919-29022058)
chr1 (42-141)||(38658018-38658117)
[»] chr2 (2 HSPs)
chr2 (37-159)||(29519712-29519834)
chr2 (42-110)||(16330447-16330515)
[»] chr6 (1 HSPs)
chr6 (43-141)||(12587009-12587107)


Alignment Details
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 20 - 159
Target Start/End: Complemental strand, 42767513 - 42767374
Alignment:
Q  20 catcaaaccccaaatcctcttcatcaaatcaacaaatccttcaatctttcctcttatgtgttgaatcttaaactcaaagcttccttctttgattaatcat 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42767513 catcaaaccccaaatcctcttcatcaaatcaacaaatccttcaatctttcctcttatgtgttgaatcttaaactcaaagcttccttctttgattaatcat 42767414  T
Q  120 ctgttgaatctcaaacccaaatgatcttcaattttctgac 159  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  42767413 ctgttgaatctcaaacccaaatgatcttcaattttctgac 42767374  T

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Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 22 - 159
Target Start/End: Original strand, 16920253 - 16920390
Alignment:
Q  22 tcaaaccccaaatcctcttcatcaaatcaacaaatccttcaatctttcctcttatgtgttgaatcttaaactcaaagcttccttctttgattaatcatct 121  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||    
T  16920253 tcaaaacccaaatcctcttcatcaaatcaacaaatccttcaatctttcctcttatgtgttgaatctcaaactcaaagtttccttctttgaataatcatct 16920352  T
Q  122 gttgaatctcaaacccaaatgatcttcaattttctgac 159  Q
    ||||||||||||||||||||||||||||||||||||||    
T  16920353 gttgaatctcaaacccaaatgatcttcaattttctgac 16920390  T

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Target: chr5; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 20 - 159
Target Start/End: Original strand, 37191841 - 37191979
Alignment:
Q  20 catcaaaccccaaatcctcttcatcaaatcaacaaatccttcaatctttcctcttatgtgttgaatcttaaactcaaagcttccttctttgattaatcat 119  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||    
T  37191841 catcaaagcccaaatcctcttcatcaaatcaacaaatccttcaatctttcctcttatgtgttgaatctcaaactcaaagcttccttctatgaataatcat 37191940  T
Q  120 ctgttgaatctcaaacccaaatgatcttcaattttctgac 159  Q
    | ||||||||||||||||||||||||||||||||||||||    
T  37191941 c-gttgaatctcaaacccaaatgatcttcaattttctgac 37191979  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 19798043 - 19798075
Alignment:
Q  42 atcaaatcaacaaatccttcaatctttcctctt 74  Q
    ||||||||| |||||||||||||||||||||||    
T  19798043 atcaaatcagcaaatccttcaatctttcctctt 19798075  T

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Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 20 - 159
Target Start/End: Original strand, 11816113 - 11816252
Alignment:
Q  20 catcaaaccccaaatcctcttcatcaaatcaacaaatccttcaatctttcctcttatgtgttgaatcttaaactcaaagcttccttctttgattaatcat 119  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11816113 catcaaagcccgaatcctcttcatcaaatcaacaaatccttcaatctttcctcttatgtgttgaatctcaaactcaaagcttccttctttgattaatcat 11816212  T
Q  120 ctgttgaatctcaaacccaaatgatcttcaattttctgac 159  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  11816213 ctgttgaatctcaaacccaaatgatcttcaattttctgac 11816252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 110
Target Start/End: Complemental strand, 43629940 - 43629872
Alignment:
Q  42 atcaaatcaacaaatccttcaatctttcctcttatgtgttgaatcttaaactcaaagcttccttctttg 110  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||    
T  43629940 atcaaatcagcaaatccttcaatctttcctcttatgtgttgaatctcaaactctaagcctccttctttg 43629872  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 55 - 141
Target Start/End: Original strand, 53595346 - 53595432
Alignment:
Q  55 atccttcaatctttcctcttatgtgttgaatcttaaactcaaagcttccttctttgattaatcatctgttgaatctcaaacccaaat 141  Q
    |||||||||||||||||||| || ||||||||| ||||| ||| | || | |||| | ||||| | ||||||||||||||| |||||    
T  53595346 atccttcaatctttcctcttctgggttgaatctcaaacttaaaacctcatgctttaaataatcctttgttgaatctcaaactcaaat 53595432  T

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Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 20 - 159
Target Start/End: Original strand, 29021919 - 29022058
Alignment:
Q  20 catcaaaccccaaatcctcttcatcaaatcaacaaatccttcaatctttcctcttatgtgttgaatcttaaactcaaagcttccttctttgattaatcat 119  Q
    ||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||| |||||||    
T  29021919 catcaaagcccaaatcatcttcttcaaatcaacaaatccttcaatctttcctcttatgtgttgaatctcaaactcaaaacttccttctatgaataatcat 29022018  T
Q  120 ctgttgaatctcaaacccaaatgatcttcaattttctgac 159  Q
     |||||||||||||||||||||||||||||||||||||||    
T  29022019 atgttgaatctcaaacccaaatgatcttcaattttctgac 29022058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 42 - 141
Target Start/End: Original strand, 38658018 - 38658117
Alignment:
Q  42 atcaaatcaacaaatccttcaatctttcctcttatgtgttgaatcttaaactcaaagcttccttctttgattaatcatctgttgaatctcaaacccaaat 141  Q
    ||||||||| || |||||||||||||||||||| || ||||||||| ||||| ||| | || | |||| | ||||| | ||||||||||||||| |||||    
T  38658018 atcaaatcagcatatccttcaatctttcctcttctgcgttgaatctcaaacttaaaacctcatgctttaaataatcctttgttgaatctcaaactcaaat 38658117  T

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Target: chr2 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 37 - 159
Target Start/End: Complemental strand, 29519834 - 29519712
Alignment:
Q  37 tcttcatcaaatcaacaaatccttcaatctttcctcttatgtgttgaatcttaaactcaaagcttccttctttgattaatcatctgttgaatctcaaacc 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||| ||||||||||||||    
T  29519834 tcttcatcaaatcaacaaatccttcaatctttcctcttatgtgttgaatctcaaactcaaagcttccttctatgaataatcatctattgaatctcaaacc 29519735  T
Q  137 caaatgatcttcaattttctgac 159  Q
    |||||||||||||||||||||||    
T  29519734 caaatgatcttcaattttctgac 29519712  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 110
Target Start/End: Complemental strand, 16330515 - 16330447
Alignment:
Q  42 atcaaatcaacaaatccttcaatctttcctcttatgtgttgaatcttaaactcaaagcttccttctttg 110  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||| ||  || |||| ||||||||||    
T  16330515 atcaaatcagcaaatccttcaatcttttctcttatgtgttgaatctcaatatctaagcctccttctttg 16330447  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 141
Target Start/End: Original strand, 12587009 - 12587107
Alignment:
Q  43 tcaaatcaacaaatccttcaatctttcctcttatgtgttgaatcttaaactcaaagcttccttctttgattaatcatctgttgaatctcaaacccaaat 141  Q
    |||||||| || |||||||||||||||||||| |||||||||||| ||||| ||| | || | |||| | ||||| | ||||||||||||||| |||||    
T  12587009 tcaaatcagcatatccttcaatctttcctcttctgtgttgaatctcaaacttaaaacctcatgctttaaataatcctttgttgaatctcaaactcaaat 12587107  T

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