View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6704_low_17 (Length: 236)
Name: NF6704_low_17
Description: NF6704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6704_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 50759638 - 50759868
Alignment:
| Q |
1 |
cagaaagaacaagaaactttaagagccttacgtgttcttggggtcacagccagtgattatacaccattcctcaccctctaatgctggataacatattttg |
100 |
Q |
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| T |
50759638 |
cagaaagaacaagaaactttaagagccttacgtgttcttggggtcacagccagtgattatacaccattcctcaccctctaatgctggataacatattttg |
50759737 |
T |
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| Q |
101 |
agaggcatttgaccaatgatatcatcccatttggcgtctattaaattcaaaatgccctcattttgtcttgttgtgcctaaacaagagacaatggcccaaa |
200 |
Q |
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| T |
50759738 |
agaggcatttgaccaatgatatcatcccatttggcgtctattaaattcaaaatgccctcattttgtcttgttgtgcctaaagaagagacgatggcccaaa |
50759837 |
T |
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| Q |
201 |
ggtttccgagtgtgaaaaacctgatgtccat |
231 |
Q |
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| T |
50759838 |
ggtttccgagtgtgaaaaacctgaagtccat |
50759868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 28 - 231
Target Start/End: Complemental strand, 4319299 - 4319096
Alignment:
| Q |
28 |
ttacgtgttcttggggtcacagccagtgattatacaccattcctcaccctctaatgctggataacatattttgagaggcatttgaccaatgatatcatcc |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4319299 |
ttacgtgttcttggggtcacagccagtgattatacaccattcctcaccctctaatgctggataacatattttgagaggcatttgaccaatgatatcatcc |
4319200 |
T |
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| Q |
128 |
catttggcgtctattaaattcaaaatgccctcattttgtcttgttgtgcctaaacaagagacaatggcccaaaggtttccgagtgtgaaaaacctgatgt |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4319199 |
catttggcgtctattaaattcaaaatgccctcattttgtcttgttgtgcctaaagaagagacaatggcccaaaggtttccgagtgtgaaaaacctgaagt |
4319100 |
T |
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| Q |
228 |
ccat |
231 |
Q |
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|||| |
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| T |
4319099 |
ccat |
4319096 |
T |
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