View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6704_low_19 (Length: 233)
Name: NF6704_low_19
Description: NF6704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6704_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 37 - 225
Target Start/End: Original strand, 19970734 - 19970922
Alignment:
| Q |
37 |
attagtagtaaattcaagttcaactcccctcccaaatagtttggaagatccaacctacctattccttttgtaagtttcttgcaatacaaaccttcccaac |
136 |
Q |
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| T |
19970734 |
attagtagtatattcaagtacaactcccctcccaaatagtttggaagatccaacctacgtattctttttgtaagtttattgcaatacacaccttcccaac |
19970833 |
T |
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| Q |
137 |
tgcaacaatcttcttccactttccatggcgaaagagctccttcagtatttactacaccttttttaaatagtaataaatttttgatgtcc |
225 |
Q |
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| T |
19970834 |
tgcaacaatcttcttccactttccatggcgaaagagctccttcagtatctactacaccttttttaaatagtaataaatttttgaggtcc |
19970922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 217
Target Start/End: Original strand, 19973830 - 19973904
Alignment:
| Q |
143 |
aatcttcttccactttccatggcgaaagagctccttcagtatttactacaccttttttaaatagtaataaatttt |
217 |
Q |
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|||||||||||| |||||||| ||| ||||||||||| ||| ||| || |||||| |||||||||||| ||||| |
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| T |
19973830 |
aatcttcttccattttccatgaggaaggagctccttcaatatctaccactccttttctaaatagtaatagatttt |
19973904 |
T |
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