View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6704_low_2 (Length: 742)
Name: NF6704_low_2
Description: NF6704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6704_low_2 |
 | |
|
| [»] scaffold0464 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 497; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 187 - 730
Target Start/End: Original strand, 12734161 - 12734702
Alignment:
| Q |
187 |
taaattaatatcagtttgaagagaaaactatgttttcattttctcatatatgtacagattccttatcgatatttgtaacccacccattgacatgtttctc |
286 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12734161 |
taaattaatatcagtttgaagagaaaact--gttttcattttctcatatatgtacagattccttatcgatatttgtaacccacccattgacatgtttctc |
12734258 |
T |
|
| Q |
287 |
gatttaaaatttcgctctactacttttttagactttttcccctacatttcaattttaaataatgtattatcctcccaaattgagaacaatttcatacttt |
386 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
12734259 |
gatttaaaatttcgctctactactttttaagactttttcccctacatttcaattttaaataatgttttatcttcccaaattgagaacaatttcatacttt |
12734358 |
T |
|
| Q |
387 |
agttttgtataaaatgttataaataccaaccaaagagagatcattcaagaggtattgaattttcttttggaggattatcttcaagtcataataatatata |
486 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12734359 |
agatttgtataaaatgttataaataccaaccaaagagagatcattcaagaggtattgaatttccttttggaggattatcttcaagtcataataatatata |
12734458 |
T |
|
| Q |
487 |
aaaacaacccaaaacaaacttattcaatttagagattataaaacgcttaaaattaattagaactattaaatcattgaagagaaacttactttcaagaggt |
586 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12734459 |
aaaacaacccaaaacaaacttattcaatttagagattataaaacgcttaaaattaattagaactattaaatcattgaagagaaacttactttcaagaggt |
12734558 |
T |
|
| Q |
587 |
tgaaactaagctttcaaaataatccctggtttgaaaccacaatattacattgtgaagagatttaatttgctcaacccttttatctctccaattatagata |
686 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
12734559 |
tgaaactaagctttcaaaataatccctggtttgaaaccacattattacattgtcaagagatttaatttggtcaacccttttatctctccaattatagata |
12734658 |
T |
|
| Q |
687 |
attgcatggcttggttgattgcttgccattataagtgtgatgtc |
730 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
12734659 |
attgcatggcttggttgattgcttgccattataagtgtgttgtc |
12734702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 254 - 695
Target Start/End: Original strand, 32578274 - 32578721
Alignment:
| Q |
254 |
gatatttgtaacccacccattgacatgtttctcgatttaaaatttcgctctactactttttta-gactttttcccctacatttcaattttaaataatgta |
352 |
Q |
| |
|
||||||||||||| |||||||||||||||||| | ||||| ||||| |||||||||||||||| |||||||| || | |||||||||||| ||||||||| |
|
|
| T |
32578274 |
gatatttgtaaccaacccattgacatgtttctagctttaacatttcactctactacttttttatgacttttttccttgcatttcaattttcaataatgta |
32578373 |
T |
|
| Q |
353 |
ttatcctcccaaattgagaacaatttcatactttagttttgtataaaatgttataaataccaaccaaagagagat---cattcaagaggtattgaatttt |
449 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||| || ||| |||| ||| ||||||||| | |||| |||||||||| |||||||| |
|
|
| T |
32578374 |
ttatcctcccaaattgagaacaacttcatactttcgttttgaatgaaacattatgaatgccaaccaaataaagattatcattcaagagtcgttgaatttc |
32578473 |
T |
|
| Q |
450 |
cttttgg-aggattatcttcaagtcataataatatataaaaacaacccaaaacaaa-cttattcaatttagagattataaaacgcttaaaattaattaga |
547 |
Q |
| |
|
|||| || |||| ||||||||||| ||||||||||||||||||||||||||| ||| || ||||| |||| ||||||||||| ||| ||||||||| | |
|
|
| T |
32578474 |
ctttagggaggactatcttcaagttataataatatataaaaacaacccaaaaaaaaactaattcagtttaatgattataaaacacttgaaattaattcaa |
32578573 |
T |
|
| Q |
548 |
actattaaatcattgaagagaaacttactttcaagaggttgaaactaagctttcaaaataatccctggtttgaaaccacaatattacattgtgaagagat |
647 |
Q |
| |
|
|| |||||||||||||||||||||||||| |||| ||||||||| ||||||||||| |||| || |||| ||||||||||||||| ||| || || |||| |
|
|
| T |
32578574 |
acaattaaatcattgaagagaaacttactctcaaaaggttgaaaataagctttcaacataagccttggtatgaaaccacaatatttcatcgtcaacagat |
32578673 |
T |
|
| Q |
648 |
ttaatttgctcaacccttttatctctccaattatagataattgcatgg |
695 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||| |||||||||| |
|
|
| T |
32578674 |
gtaatttgctcaacccttttatttctccaatcatagagaattgcatgg |
32578721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 85 - 210
Target Start/End: Original strand, 12733953 - 12734078
Alignment:
| Q |
85 |
ggttcacaaacatatacttagccaatttgaacatttatacaatacaattacaaagtatgaccacaacagattccttatcgataaaaaagttttgacgtaa |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
12733953 |
ggttcacaaacatatacttagccaatttgaacatttatacaatacaattacaaagtataaccacaacagattccttatcgctaaaaaagttttgacgtaa |
12734052 |
T |
|
| Q |
185 |
attaaattaatatcagtttgaagaga |
210 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
12734053 |
attaaattaatatcagtttgaagaga |
12734078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 12733859 - 12733923
Alignment:
| Q |
23 |
ctgctagacccaaacagccaaatcttgtttgttaactcaatttattctattaggaaacagatggt |
87 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12733859 |
ctgctagacccaatcagccaaatcttgtttgttaactcaatttattctattaggaaacagatggt |
12733923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0464 (Bit Score: 479; Significance: 0; HSPs: 2)
Name: scaffold0464
Description:
Target: scaffold0464; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 176 - 698
Target Start/End: Complemental strand, 8791 - 8269
Alignment:
| Q |
176 |
ttgacgtaaattaaattaatatcagtttgaagagaaaactatgttttcattttctcatatatgtacagattccttatcgatatttgtaacccacccattg |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8791 |
ttgacgtaaattaaattaatatcagtttgaagagaacactatgttttcattttctcatatatgtacagattccttatcgatatttgtaacccacccattg |
8692 |
T |
|
| Q |
276 |
acatgtttctcgatttaaaatttcgctctactacttttttagactttttcccctacatttcaattttaaataatgtattatcctcccaaattgagaacaa |
375 |
Q |
| |
|
|| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
8691 |
acctgtttctcgatttaaaatttcactctactacttttttagactttttcccctacatttcaattttaaataatgttttatcttcccaaattgagaacaa |
8592 |
T |
|
| Q |
376 |
tttcatactttagttttgtataaaatgttataaataccaaccaaagagagatcattcaagaggtattgaattttcttttggaggattatcttcaagtcat |
475 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8591 |
tttcatactttagttttgtataaaatgttatgaataccaaccaaagagagatcattcaagaggtattgaatttccttttggaggattatcttcaagtcat |
8492 |
T |
|
| Q |
476 |
aataatatataaaaacaacccaaaacaaacttattcaatttagagattataaaacgcttaaaattaattagaactattaaatcattgaagagaaacttac |
575 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
8491 |
aataatatataaaaacaacccaaaacaaacttattcaatttagagattataaaacgcttaaaattaattagaactattaaattattaaagagaaacttac |
8392 |
T |
|
| Q |
576 |
tttcaagaggttgaaactaagctttcaaaataatccctggtttgaaaccacaatattacattgtgaagagatttaatttgctcaacccttttatctctcc |
675 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8391 |
tttcaagaggttgaaactaagctttcaaaataatccctggtttgaaaccacattattacattgtcaagagatttaatttgctcaacccttttatctctcc |
8292 |
T |
|
| Q |
676 |
aattatagataattgcatggctt |
698 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
8291 |
aattatagataattgcatggctt |
8269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0464; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 8911 - 8847
Alignment:
| Q |
23 |
ctgctagacccaaacagccaaatcttgtttgttaactcaatttattctattaggaaacagatggt |
87 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8911 |
ctgctagacccaaacagccaaatcttgttggttaactcaatttattctattaggaaacagatggt |
8847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 178; Significance: 1e-95; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 321 - 697
Target Start/End: Complemental strand, 14749959 - 14749582
Alignment:
| Q |
321 |
ttttcccctacatttcaattttaaataatgtattatcctcccaaattgagaacaatttcatactttagttttgtataaaatgttataaataccaaccaaa |
420 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||||| ||| || ||||||||| |||| ||||||||| |||||||||| | || | |||||||| |
|
|
| T |
14749959 |
ttttcccctgcatttcaattttaaataatgttttatcctccaaaactgtgaacaatttaatacattagttttggataaaatgttctgaaaagcaaccaaa |
14749860 |
T |
|
| Q |
421 |
gagagatcattcaagaggtattgaattttcttttgg-aggattatcttcaagtcataataatatataaaaacaacccaaaacaaacttattcaatttaga |
519 |
Q |
| |
|
| | |||||||||||| |||||||| |||||| |||| |||||| |||| |||||||||||||||||||||| |||||||||| ||||| || | |
|
|
| T |
14749859 |
taaatatcattcaagagtcgttgaatttcgttttgggaggactatcttgaagttataataatatataaaaacaaccgaaaacaaactcattcagttcaat |
14749760 |
T |
|
| Q |
520 |
gattataaaacgcttaaaattaattagaactattaaatcattgaagagaaacttactttcaagaggttgaaactaagctttcaaaataatccctggtttg |
619 |
Q |
| |
|
||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||| |||||| ||||||||||| | ||||| |||| | |
|
|
| T |
14749759 |
gattataaaacacttaaaattaattcaaaaaattaaatcattgaagagaaacttactttcaagagcttgaaattaagctttcaacaaaatccttggtata |
14749660 |
T |
|
| Q |
620 |
aaaccacaatattacattgtgaagagatttaatttgctcaacccttttatctctccaattatagataattgcatggct |
697 |
Q |
| |
|
||||||||||||| |||||| | |||| ||||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
14749659 |
aaaccacaatatttcattgtcaccagatgtaatttgttcaacccttttatctatccaattatagataattgcatggct |
14749582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 230
Target Start/End: Complemental strand, 14750118 - 14750048
Alignment:
| Q |
159 |
ttatcgataaaaaagttttgacgtaaattaaattaatatcagtttgaagagaaaactatgttttcattttct |
230 |
Q |
| |
|
||||| |||| |||||||||| ||||| |||||||||||||||| ||||||||| ||| ||||||||||| |
|
|
| T |
14750118 |
ttatctataacaaagttttgaattaaatgaaattaatatcagtttaaagagaaaatgatg-tttcattttct |
14750048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 169; Significance: 3e-90; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 349 - 695
Target Start/End: Complemental strand, 19780163 - 19779813
Alignment:
| Q |
349 |
tgtattatcctcccaaattgagaacaatttcatactttagttttgtataaaatgttataaataccaaccaaagagagatcattcaagaggtattgaattt |
448 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||||||||| |||||| || | ||| ||||||||| | |||||||||||||| | |||||||| |
|
|
| T |
19780163 |
tgtattatcctcccaaattgagaacaacttcttactttagttttggataaaacattgtgaatgccaaccaaataaagatcattcaagagttgttgaattt |
19780064 |
T |
|
| Q |
449 |
tcttttgg--aggattatcttcaagtcataataatatataaaa--acaacccaaaacaaacttattcaatttagagattataaaacgcttaaaattaatt |
544 |
Q |
| |
|
||||||| |||| ||||||||||| ||||||||||||| || ||||||||||||||||| ||||| || | |||||||||| ||| ||||||||| |
|
|
| T |
19780063 |
ccttttggggaggactatcttcaagttataataatatatataagaacaacccaaaacaaactcattcagttcaatgattataaaatacttcaaattaatt |
19779964 |
T |
|
| Q |
545 |
agaactattaaatcattgaagagaaacttactttcaagaggttgaaactaagctttcaaaataatccctggtttgaaaccacaatattacattgtgaaga |
644 |
Q |
| |
|
||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| |||| ||||||||||||||| |||||| || | |
|
|
| T |
19779963 |
caaacagttaaatcattgaagagaaacttactctcaaaaggttgaaactaagctttcaacataatccttggtatgaaaccacaatatttcattgtcaaca |
19779864 |
T |
|
| Q |
645 |
gatttaatttgctcaacccttttatctctccaattatagataattgcatgg |
695 |
Q |
| |
|
||| |||||||||| ||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
19779863 |
gatgtaatttgctctaccgttttatctctccaattatagagaattgcatgg |
19779813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 254 - 695
Target Start/End: Original strand, 19887131 - 19887570
Alignment:
| Q |
254 |
gatatttgtaacccacccattgacatgtttctcgatttaaaatttcgctctactacttttttagactttttcccctacatttcaattttaaataatgtat |
353 |
Q |
| |
|
|||| |||||||| ||| ||||||||||||| || ||||| ||| |||||||||||||| ||||||||| |||| |||||||||||||| |||||| | |
|
|
| T |
19887131 |
gatagttgtaaccaacctattgacatgtttcacgctttaacattagactctactactttttaagacttttttccctgcatttcaattttaattaatgttt |
19887230 |
T |
|
| Q |
354 |
tatcctcccaaattgagaacaatttcatactttagttttgtataaaatgttataaataccaaccaaagagagatcattcaagaggtattgaattttcttt |
453 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||| | |||||||||| | |||| || ||||| | |||||||||||||| |||||||| ||| |
|
|
| T |
19887231 |
tatcctcccaaattgagaacaacttcatacattagtttgggataaaatgttctgaatagcagccaaataaagatcattcaagagtcgttgaatttcgttt |
19887330 |
T |
|
| Q |
454 |
tgg--------aggattatcttcaagtcataataatatataaaaacaacccaaaacaaacttattcaatttagagattataaaacgcttaaaattaatta |
545 |
Q |
| |
|
||| |||| ||||| |||| |||||||||||||||||||| ||| ||||| || | ||||||||||| ||||||||||||| |
|
|
| T |
19887331 |
tgggaggaccgaggaccatctttaagttataataatatataaaaacaa----------actcattcagttcaatgattataaaacacttaaaattaattc |
19887420 |
T |
|
| Q |
546 |
gaactattaaatcattgaagagaaacttactttcaagaggttgaaactaagctttcaaaataatccctggtttgaaaccacaatattacattgtgaagag |
645 |
Q |
| |
|
||| |||||||||||||| ||||||||||| |||| || |||||||||||||||||| ||||||| |||| ||||||||||||||| |||||| || || |
|
|
| T |
19887421 |
aaacaattaaatcattgaatagaaacttactctcaaaagattgaaactaagctttcaacataatccttggtatgaaaccacaatatttcattgtcaacag |
19887520 |
T |
|
| Q |
646 |
atttaatttgctcaacccttttatctctccaattatagataattgcatgg |
695 |
Q |
| |
|
|| |||||||||| ||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
19887521 |
atgtaatttgctctaccgttttatctctccagttatagataattgcatgg |
19887570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 254 - 694
Target Start/End: Complemental strand, 19358568 - 19358122
Alignment:
| Q |
254 |
gatatttgtaacccacccattgacatgtttctcgatttaaaatttcgctctactacttttttagactttttcccctacatttcaattttaaataatgtat |
353 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||| ||||| ||||| |||||||||||||| ||||||| || |||||||||||||||| ||| |
|
|
| T |
19358568 |
gatatctgtaaccaacccattgacatgtttctcgctttaacatttcactctactactttttataacttttttcctggcatttcaattttaaatt---tat |
19358472 |
T |
|
| Q |
354 |
tatcctcccaaattgagaacaatttcatactttagttttgtataaaatgttataaataccaaccaaagagagatcattcaagaggtattgaattttcttt |
453 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||||||||| || ||||||||||||| || ||||||||||| |||||||||| |||| |
|
|
| T |
19358471 |
tatcctcccaaatcgagaacaacttcatactttagttttgtataaaattttccaaataccaaccaagttaaggtcattcaagagttattgaatttccttt |
19358372 |
T |
|
| Q |
454 |
-tggaggattatcttcaagtcataat--------aatatataaaaacaacccaaaacaaacttattcaatttagagattataaaacgcttaaaattaatt |
544 |
Q |
| |
|
||||||||||| |||||| ||||| |||||||| ||||||| ||||||||| ||||| || ||||||||||||| ||| |||| |||| |
|
|
| T |
19358371 |
acggaggattatcgtcaagttataattatattaatatatataagaacaaccagaaacaaactcattcagttcagagattataaaaaactttaaataaatt |
19358272 |
T |
|
| Q |
545 |
agaactattaaatcattgaagagaaacttactttcaagaggttgaaactaagctttcaaaataatccctggtttgaaaccacaatattacattgtgaaga |
644 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||| |||| | ||||||| ||||| ||||| | | |
|
|
| T |
19358271 |
tgaacaattaaatcatagaagagaaacttactttcaagaggatgaaactaagctttcaacataatctttggtataaaaccaccatattttattgttgaca |
19358172 |
T |
|
| Q |
645 |
gatttaatttgctcaacccttttatctctccaattatagataattgcatg |
694 |
Q |
| |
|
||| || | |||| || |||||||||||||||||||||| ||||||||| |
|
|
| T |
19358171 |
gatgtagtatgctttactcttttatctctccaattatagagaattgcatg |
19358122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 268 - 538
Target Start/End: Complemental strand, 19722670 - 19722389
Alignment:
| Q |
268 |
acccattgacatgtttctcgatttaaaatttcgctctactacttttttagactttttcccctacatttcaattttaaataatgtattat---cctcccaa |
364 |
Q |
| |
|
|||||||||||||||| || |||||||| ||| |||||||||||||| | ||| ||| | | ||||| |||||||||||||||||||| |||||||| |
|
|
| T |
19722670 |
acccattgacatgtttgtcaatttaaaaattcactctactactttttaacactattttacttgcatttaaattttaaataatgtattattatcctcccaa |
19722571 |
T |
|
| Q |
365 |
attgagaacaatttcatactttagttttgtataaaatgttataaataccaaccaaagagagatcattcaagaggtattgaattttctttt-ggaggatta |
463 |
Q |
| |
|
||||||||||| || ||||| ||||||||||||| ||||| | || |||||||||| | | |||||||||||| ||||||||| ||||| ||||||| |
|
|
| T |
19722570 |
attgagaacaacttgatactctagttttgtataagatgttctgaaaaccaaccaaacaaacatcattcaagagtcattgaatttccttttaggaggatag |
19722471 |
T |
|
| Q |
464 |
tcttcaag-------tcataataatatataaaaacaacccaaaacaaacttattcaatttagagattataaaacgcttaaaa |
538 |
Q |
| |
|
|| ||||| | |||||| ||||| ||||||| ||||||||||| ||||| || |||||||| ||||| ||||||| |
|
|
| T |
19722470 |
tcgtcaagttataacttataatattatattaaaacaaaccaaaacaaacacattcagttcagagattacaaaacacttaaaa |
19722389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 551 - 684
Target Start/End: Original strand, 19350814 - 19350947
Alignment:
| Q |
551 |
attaaatcattgaagagaaacttactttcaagaggttgaaactaagctttcaaaataatccctggtttgaaaccacaatattacattgtgaagagattta |
650 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||| | ||||||| ||||| ||||| | ||||||| |
|
|
| T |
19350814 |
attaaatcattaaagagaaacttactttcaagaggttgaaactaagctttcaacataattcctagcaaaaaaccaccatattctattgttgacagattta |
19350913 |
T |
|
| Q |
651 |
atttgctcaacccttttatctctccaattataga |
684 |
Q |
| |
|
|| ||||| || |||||||||||||||||||||| |
|
|
| T |
19350914 |
atatgctctactcttttatctctccaattataga |
19350947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 254 - 314
Target Start/End: Complemental strand, 14737977 - 14737917
Alignment:
| Q |
254 |
gatatttgtaacccacccattgacatgtttctcgatttaaaatttcgctctactacttttt |
314 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||| ||||| ||||| |||||||||||||| |
|
|
| T |
14737977 |
gatatgtgtaaccaacccattgacatgtttctcactttaacatttcactctactacttttt |
14737917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 19780387 - 19780330
Alignment:
| Q |
85 |
ggttcacaaacatatacttagccaatttgaacatttatacaatacaattacaaagtat |
142 |
Q |
| |
|
|||||||||| ||| || |||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
19780387 |
ggttcacaaatatacgctcagccaatttgaatatttataccatacaattacaaagtat |
19780330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 569 - 611
Target Start/End: Original strand, 22524940 - 22524982
Alignment:
| Q |
569 |
aacttactttcaagaggttgaaactaagctttcaaaataatcc |
611 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||| ||||||| |
|
|
| T |
22524940 |
aacttactttcaagaagttgaaaccaagctttcaacataatcc |
22524982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 563 - 604
Target Start/End: Original strand, 29476037 - 29476078
Alignment:
| Q |
563 |
aagagaaacttactttcaagaggttgaaactaagctttcaaa |
604 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
29476037 |
aagagaaacttactttcaaaaaattgaaactaagctttcaaa |
29476078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 165; Significance: 7e-88; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 255 - 694
Target Start/End: Original strand, 18912972 - 18913409
Alignment:
| Q |
255 |
atatttgtaacccacccattgacatgtttctcgatttaaaatttcgctctactactttttta-gactttttcccctacatttcaattttaaa-taatgta |
352 |
Q |
| |
|
|||||||||||| | |||||||||||||||||| ||||| ||| | |||| | |||| || |||||||| |||| ||||||||||||||| ||||||| |
|
|
| T |
18912972 |
atatttgtaaccaaaccattgacatgtttctcgctttaacatt-cactctttttattttgtaagacttttttccctgcatttcaattttaaaataatgta |
18913070 |
T |
|
| Q |
353 |
ttatcctcccaaattgagaacaatttcatactttagttttgtataaaatgttataaataccaaccaaagagagatcattcaagaggtattgaattttctt |
452 |
Q |
| |
|
| | ||||||||||||||| || |||||||||||||||||||||||||||| | ||||||||| ||| | | |||||||||| | ||||||||| ||| |
|
|
| T |
18913071 |
ctgttctcccaaattgagaaaaacttcatactttagttttgtataaaatgttctgaataccaactaaacaaa-atcattcaagggtaattgaatttcctt |
18913169 |
T |
|
| Q |
453 |
ttgg-aggattatcttcaagtcataataatatataaaaacaacccaaaacaaacttattcaatttagagattataaaacgcttaaaattaattagaacta |
551 |
Q |
| |
|
|||| |||||||| | |||| |||||||||||| ||||||||| |||||||||| ||||| || |||||||||||||| |||| |||||| |||||| | |
|
|
| T |
18913170 |
ttgggaggattattcttaagttataataatatattaaaacaaccaaaaacaaactcattcacttcagagattataaaacacttataattaagtagaacaa |
18913269 |
T |
|
| Q |
552 |
ttaaatcattgaagagaaacttactttcaagaggttgaaactaagctttcaaaataatccctggtttgaaaccacaatattacattgtgaagagatttaa |
651 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || |||||||||| ||||| | |||| |||||||||||||| ||||| || | || |
|
|
| T |
18913270 |
ttaaatcattgaagagaaacttactttcaagaggttgataccaagctttcaacataattcttggtatgaaaccacaatatgttattgt---tagttgcaa |
18913366 |
T |
|
| Q |
652 |
tttgctcaacccttttatctctccaattatagataattgcatg |
694 |
Q |
| |
|
|||||||||| | ||||||||||||||||||| ||||||||| |
|
|
| T |
18913367 |
tttgctcaactttattatctctccaattatagagaattgcatg |
18913409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 535 - 610
Target Start/End: Original strand, 18908505 - 18908580
Alignment:
| Q |
535 |
aaaattaattagaactattaaatcattgaagagaaacttactttcaagaggttgaaactaagctttcaaaataatc |
610 |
Q |
| |
|
||||| ||||||||| |||||||||| ||||| ||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
18908505 |
aaaatcaattagaacaattaaatcatcgaagaaaaacttactttcaagaggttgaaaccaagctttcaacataatc |
18908580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 337 - 575
Target Start/End: Original strand, 18920274 - 18920507
Alignment:
| Q |
337 |
aattttaaataatgtattatcctcccaaattgagaacaatttcatacttt-agttttgtataaaatgttataaataccaaccaaagagagatcattcaag |
435 |
Q |
| |
|
||||| ||||||| || ||| |||| ||||| ||||||| |||||||||| ||||||| ||| |||||| | | ||| ||||||| | ||||||| |||| |
|
|
| T |
18920274 |
aatttgaaataatttactattctccaaaattaagaacaacttcatactttcagttttgcatacaatgttttgattacaaaccaaataaagatcatgcaag |
18920373 |
T |
|
| Q |
436 |
aggtattgaattttcttttgg-aggattatcttcaagtcataataatatataaaaacaacccaaaacaaacttattcaatttagagattataaaacgc-t |
533 |
Q |
| |
|
| |||||||| ||||||| |||||||||||||||| ||||||||||||||| ||| ||||| ||| | || ||| || ||||||| | | |
|
|
| T |
18920374 |
actcgttgaatttccttttgggaggattatcttcaagt--------tatataaaaacaaccaaaacaaaactcattaagttcagatatcataaaacacat |
18920465 |
T |
|
| Q |
534 |
taaaattaattagaactattaaatcattgaagagaaacttac |
575 |
Q |
| |
|
|||||||||||||| | |||||||||||||| |||||||| |
|
|
| T |
18920466 |
aaaaattaattagaataactaaatcattgaagataaacttac |
18920507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 18920126 - 18920190
Alignment:
| Q |
181 |
gtaaattaaattaatatcagtttgaagagaaaactatgttttcattttctcatatatgtacagat |
245 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||| | ||||||||| |||||| |||| |
|
|
| T |
18920126 |
gtaaatgaaattaatatcagtttgaagagaaaatgatgtttcccttttctcatctatgtatagat |
18920190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 18908360 - 18908426
Alignment:
| Q |
258 |
tttgtaacccacccattgacatgtttctcgatttaaaatttcgctctactacttttttagacttttt |
324 |
Q |
| |
|
||||||||| | || ||||||||||||| | ||||| ||||| || ||||||||||| ||||||||| |
|
|
| T |
18908360 |
tttgtaaccaaaccgttgacatgtttcttgctttaacatttcactttactactttttaagacttttt |
18908426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 326 - 395
Target Start/End: Original strand, 6384929 - 6384998
Alignment:
| Q |
326 |
ccctacatttcaattttaaataatgtattatcctcccaaattgagaacaatttcatactttagttttgta |
395 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||| ||| |||||| |||| ||||||||||||||||||| |
|
|
| T |
6384929 |
ccctgcatttcaattttaaataatgctttatccttccagattgagtacaacttcatactttagttttgta |
6384998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 254 - 316
Target Start/End: Original strand, 17588719 - 17588781
Alignment:
| Q |
254 |
gatatttgtaacccacccattgacatgtttctcgatttaaaatttcgctctactactttttta |
316 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||| ||||| ||||| |||||||||||||||| |
|
|
| T |
17588719 |
gatatgtgtaaccaacccattgacatgtttctcactttaacatttcactctactactttttta |
17588781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 562 - 611
Target Start/End: Complemental strand, 4571256 - 4571207
Alignment:
| Q |
562 |
gaagagaaacttactttcaagaggttgaaactaagctttcaaaataatcc |
611 |
Q |
| |
|
|||||||||||||||||||| | ||| |||||||||||||| ||||||| |
|
|
| T |
4571256 |
gaagagaaacttactttcaaaaaattggaactaagctttcaacataatcc |
4571207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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