View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6704_low_22 (Length: 210)
Name: NF6704_low_22
Description: NF6704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6704_low_22 |
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| [»] chr4 (4 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 55 - 210
Target Start/End: Complemental strand, 52011632 - 52011477
Alignment:
| Q |
55 |
atgtggaacatgaagttgatgttgatgatgcttctccaacacctttctctgaagcaatcaaagctattcaggaacgaattgcgaaaagcaagaaaaaagg |
154 |
Q |
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| T |
52011632 |
atgtggaacatgaagttgatgttgatgatgcttctccaacacctttctctgaagcaatcaaagctattcaggaacgaattgcgaaaagcaagaaaaaagg |
52011533 |
T |
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| Q |
155 |
ggttgttaaggaatcctttatttgggttccgaaaagaaacggagaagatttggtga |
210 |
Q |
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| T |
52011532 |
ggttgttaaggaatcctttatttgggttccgaaaagaaacggagaagatttggtga |
52011477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 52011698 - 52011630
Alignment:
| Q |
13 |
catcacaaattcacactgtttctgagaatgaagacgatcatcatgtggaacatgaagttgatgttgatg |
81 |
Q |
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| T |
52011698 |
catcacaaattcacactgtttctgtgaatgaagacgatcatcatgtgggacatgaaattgatgatgatg |
52011630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 77 - 179
Target Start/End: Original strand, 51987888 - 51987990
Alignment:
| Q |
77 |
tgatgatgcttctccaacacctttctctgaagcaatcaaagctattcaggaacgaattgcgaaaagcaagaaaaaaggggttgttaaggaatcctttatt |
176 |
Q |
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| T |
51987888 |
tgatgatggttctccaacacctttctctaaagcaattaaagctattcaagaaagaatcgccaaaagcatgaaaaaagggcttgttgatgaatctcttatt |
51987987 |
T |
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| Q |
177 |
tgg |
179 |
Q |
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| T |
51987988 |
tgg |
51987990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 75 - 150
Target Start/End: Complemental strand, 52001747 - 52001672
Alignment:
| Q |
75 |
gttgatgatgcttctccaacacctttctctgaagcaatcaaagctattcaggaacgaattgcgaaaagcaagaaaa |
150 |
Q |
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| T |
52001747 |
gttgatgatgattctccaactcctttctctaaagcagtcaaagctattcaagaacgaattactaaaagcaacaaaa |
52001672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 76 - 210
Target Start/End: Complemental strand, 11749420 - 11749286
Alignment:
| Q |
76 |
ttgatgatgcttctccaacacctttctctgaagcaatcaaagctattcaggaacgaattgcgaaaagcaagaaaaaaggggttgttaaggaatcctttat |
175 |
Q |
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| T |
11749420 |
ttgatgatggttctccaactcctttctccgaaacaatcaaagctattcaagaacgaattgccaaaaccaagaaaatggggtttgttgatgaatcccttat |
11749321 |
T |
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| Q |
176 |
ttgggttccgaaaagaaacggagaagatttggtga |
210 |
Q |
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| T |
11749320 |
ttgggttccgaaaaggaatggagaagatttggtga |
11749286 |
T |
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