View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6704_low_4 (Length: 495)

Name: NF6704_low_4
Description: NF6704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6704_low_4
NF6704_low_4
[»] chr6 (11 HSPs)
chr6 (32-321)||(21883391-21883681)
chr6 (23-313)||(24901806-24902097)
chr6 (23-267)||(14607499-14607744)
chr6 (23-313)||(18817037-18817328)
chr6 (82-314)||(2919730-2919963)
chr6 (87-314)||(6689385-6689613)
chr6 (152-316)||(19266890-19267054)
chr6 (21-198)||(30705411-30705588)
chr6 (367-477)||(11842824-11842938)
chr6 (97-197)||(25085237-25085338)
chr6 (124-185)||(22260250-22260310)
[»] chr3 (24 HSPs)
chr3 (23-316)||(38573101-38573395)
chr3 (23-314)||(24310001-24310293)
chr3 (64-314)||(23778423-23778672)
chr3 (32-314)||(36477731-36478014)
chr3 (22-309)||(7856623-7856907)
chr3 (23-313)||(26903275-26903566)
chr3 (23-313)||(36617474-36617765)
chr3 (326-491)||(52808069-52808236)
chr3 (163-314)||(7728748-7728899)
chr3 (85-265)||(25031993-25032177)
chr3 (44-314)||(36475613-36475886)
chr3 (163-314)||(8034854-8035005)
chr3 (22-314)||(26285521-26285803)
chr3 (323-477)||(53286755-53286911)
chr3 (322-491)||(54139775-54139950)
chr3 (65-179)||(35502350-35502465)
chr3 (59-114)||(52308781-52308836)
chr3 (80-179)||(30136769-30136866)
chr3 (80-179)||(30142898-30142995)
chr3 (80-179)||(30146320-30146417)
chr3 (123-183)||(41897717-41897777)
chr3 (116-179)||(6714029-6714092)
chr3 (348-397)||(1924243-1924293)
chr3 (23-95)||(25070627-25070699)
[»] chr1 (13 HSPs)
chr1 (84-321)||(6226868-6227106)
chr1 (22-314)||(25031069-25031361)
chr1 (320-491)||(23707191-23707362)
chr1 (59-314)||(9477786-9478042)
chr1 (21-314)||(10780869-10781151)
chr1 (23-313)||(1016702-1016993)
chr1 (37-314)||(9539313-9539580)
chr1 (44-313)||(34912456-34912727)
chr1 (21-174)||(8065103-8065257)
chr1 (25-192)||(27464069-27464237)
chr1 (163-314)||(42311323-42311464)
chr1 (44-179)||(23353534-23353669)
chr1 (119-179)||(31738109-31738169)
[»] chr5 (16 HSPs)
chr5 (21-314)||(36745062-36745356)
chr5 (44-313)||(43144709-43144979)
chr5 (82-321)||(36633672-36633912)
chr5 (44-266)||(17076356-17076579)
chr5 (60-267)||(25819240-25819447)
chr5 (84-179)||(39509268-39509364)
chr5 (65-179)||(5569121-5569242)
chr5 (44-148)||(30078095-30078202)
chr5 (121-195)||(11498187-11498262)
chr5 (121-195)||(11505543-11505618)
chr5 (121-195)||(11512937-11513012)
chr5 (121-195)||(11520313-11520388)
chr5 (121-195)||(11527721-11527796)
chr5 (37-104)||(34750977-34751044)
chr5 (59-104)||(5070012-5070057)
chr5 (97-195)||(11535127-11535227)
[»] chr4 (19 HSPs)
chr4 (23-314)||(4377406-4377699)
chr4 (21-314)||(36247995-36248289)
chr4 (44-314)||(33518221-33518491)
chr4 (60-244)||(2815733-2815920)
chr4 (82-314)||(50723002-50723224)
chr4 (21-178)||(2158753-2158911)
chr4 (322-466)||(48431774-48431920)
chr4 (152-314)||(5882679-5882841)
chr4 (164-270)||(2185307-2185413)
chr4 (97-314)||(24153718-24153925)
chr4 (23-179)||(1112124-1112280)
chr4 (25-179)||(25023057-25023211)
chr4 (226-314)||(2158909-2158997)
chr4 (97-195)||(40407798-40407897)
chr4 (155-195)||(56094925-56094965)
chr4 (97-195)||(13834173-13834272)
chr4 (158-257)||(49078356-49078455)
chr4 (129-195)||(35255142-35255208)
chr4 (159-192)||(32934340-32934373)
[»] chr7 (23 HSPs)
chr7 (60-313)||(33941327-33941581)
chr7 (23-314)||(2945083-2945376)
chr7 (26-307)||(1691775-1692062)
chr7 (21-255)||(24658545-24658780)
chr7 (23-313)||(43265631-43265922)
chr7 (44-312)||(30074330-30074588)
chr7 (21-190)||(38300188-38300357)
chr7 (23-313)||(46089882-46090171)
chr7 (186-313)||(38293505-38293632)
chr7 (163-314)||(10702820-10702971)
chr7 (84-211)||(8256734-8256862)
chr7 (45-179)||(25233095-25233230)
chr7 (61-195)||(27080575-27080710)
chr7 (61-195)||(27197591-27197726)
chr7 (161-314)||(32221704-32221856)
chr7 (201-314)||(24039500-24039613)
chr7 (48-175)||(39785648-39785776)
chr7 (124-195)||(1247839-1247910)
chr7 (121-191)||(8062569-8062639)
chr7 (121-195)||(38838337-38838411)
chr7 (97-195)||(25617858-25617957)
chr7 (44-179)||(26787423-26787560)
chr7 (84-179)||(33598005-33598101)
[»] chr8 (16 HSPs)
chr8 (25-314)||(44873412-44873703)
chr8 (21-313)||(29866288-29866581)
chr8 (21-321)||(24556586-24556887)
chr8 (23-313)||(2148506-2148797)
chr8 (23-313)||(45485892-45486183)
chr8 (62-314)||(32161081-32161335)
chr8 (61-314)||(6802449-6802703)
chr8 (33-195)||(7681171-7681334)
chr8 (45-148)||(34696879-34696983)
chr8 (97-195)||(41303312-41303411)
chr8 (97-195)||(3662180-3662280)
chr8 (59-116)||(11993599-11993656)
chr8 (44-179)||(43421754-43421889)
chr8 (26-104)||(10381549-10381627)
chr8 (128-195)||(4587093-4587160)
chr8 (80-175)||(7387963-7388054)
[»] chr2 (14 HSPs)
chr2 (37-314)||(3356782-3357059)
chr2 (37-314)||(32033113-32033389)
chr2 (163-314)||(6141559-6141710)
chr2 (83-321)||(11562191-11562429)
chr2 (163-314)||(18458861-18459012)
chr2 (23-257)||(4075567-4075801)
chr2 (21-314)||(18703350-18703641)
chr2 (153-313)||(4075822-4075982)
chr2 (65-173)||(7700509-7700618)
chr2 (97-195)||(7165409-7165508)
chr2 (65-179)||(38417898-38418013)
chr2 (82-179)||(16639002-16639099)
chr2 (61-144)||(34878498-34878582)
chr2 (121-197)||(20966312-20966385)
[»] scaffold0002 (1 HSPs)
scaffold0002 (21-104)||(461228-461310)
[»] scaffold0684 (1 HSPs)
scaffold0684 (47-104)||(4254-4311)
[»] scaffold0535 (1 HSPs)
scaffold0535 (118-179)||(9895-9956)
[»] scaffold0163 (1 HSPs)
scaffold0163 (47-104)||(3807-3864)


Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 32 - 321
Target Start/End: Original strand, 21883391 - 21883681
Alignment:
Q  32 cactaatcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagcca 130  Q
    |||| |||||| |||||||||||||||||||||||| ||||||| || | ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  21883391 cactgatcatctattttgttacttaatttactcttctcaacttttatagttgaaaaaacacgttcaacacttgcagttgctaccggcaagagcaaagcca 21883490  T
Q  131 acttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgg 230  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  21883491 acttcaaaagtttataaaccatagcaaatgtgttgtacttatttgtttccacaagttttgcacaaagatctaaaagccattacaacttaacaacttttgg 21883590  T
Q  231 gtcagatcgaacatttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaatttagtc 321  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||||||  ||| ||||||||||| ||||||||||||||| ||||    
T  21883591 gtcagattgaacatttgtaacataattcttaagttgagtgtgtaacgccactttcggagcatctataaaaacatttggataaaattcagtc 21883681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 23 - 313
Target Start/End: Original strand, 24901806 - 24902097
Alignment:
Q  23 tcatttatccactaatcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caaga 121  Q
    ||||||| ||| | |||| | |||||||||| ||| | |||||||||||  ||||| |||||||||||||||||||||||||||||||| |||| |||||    
T  24901806 tcatttaaccattgatcacccattttgttacgtaaatgactcttcacaatcttcatagctgaaaaaacacgttcaacacttgcagttgcaaccggcaaga 24901905  T
Q  122 gcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaac 221  Q
    ||||||||||||||||||| ||| |||||  ||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||  |    
T  24901906 gcaaagccaacttcaaaagcttaaaaaccaaagcaaatgtcttgcacttatttgtttccacaagtattgcacaaagatccgaaagccctttcaactttgc 24902005  T
Q  222 aacttttgggtcagatcgaacatttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaa 313  Q
    || |||||| ||||||  ||||||| |||||||||||| ||||||  || | ||| ||||||| |  ||||||| |||||||||||||||||    
T  24902006 aaattttggatcagatttaacatttctaacataattctgaagttgtctgcgcaactccacttccgacacatctacaaaatcatttggataaa 24902097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 23 - 267
Target Start/End: Complemental strand, 14607744 - 14607499
Alignment:
Q  23 tcatttatccactaatcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caaga 121  Q
    |||||||  ||||||||||| |||| ||||| ||  |||||||||||||||||||| | |||||||||||||| |||||||||||||||||||| |||||    
T  14607744 tcatttagtcactaatcatctatttggttacataggttactcttcacaactttcataggtgaaaaaacacgtttaacacttgcagttgctaccgtcaaga 14607645  T
Q  122 gcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaac 221  Q
    |||||| |||||||||||||||||||||| || |  |||||||||||||||||||||| ||| |||| | |||||||||||||||||  |  |||||| |    
T  14607644 gcaaagtcaacttcaaaagtttataaaccataacttatgtgttgcacttatttgtttctacatgtttagaacaaagatctgaaagccaatttaacttagc 14607545  T
Q  222 aacttttgggtcagatcgaacatttgtaacataattcttaagttga 267  Q
    || |||||||||| ||||||||||||||||||||||||||||||||    
T  14607544 aaattttgggtcatatcgaacatttgtaacataattcttaagttga 14607499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 23 - 313
Target Start/End: Original strand, 18817037 - 18817328
Alignment:
Q  23 tcatttatccactaatcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caaga 121  Q
    ||||||| ||| | |||| | |||||||||| ||| | |||||||||||  ||||| |||||||||||||||||||||||||||||||| |||| |||||    
T  18817037 tcatttaaccattgatcacccattttgttacgtaaatgactcttcacaatcttcatagctgaaaaaacacgttcaacacttgcagttgcaaccggcaaga 18817136  T
Q  122 gcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaac 221  Q
    ||||||||||||||||||| ||| |||||  ||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||  |    
T  18817137 gcaaagccaacttcaaaagcttaaaaaccaaagcaaatgtcttgcacttatttgtttccacaagtattgcacaaagatccgaaagccctttcaactttgc 18817236  T
Q  222 aacttttgggtcagatcgaacatttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaa 313  Q
    || |||||| ||||||  ||||||| |||||||||| | ||||||  || | ||| ||||||| |  ||||||| |||||||||||||||||    
T  18817237 aaattttggatcagatttaacatttctaacataattatgaagttgtctgcgcaactccacttccgacacatctacaaaatcatttggataaa 18817328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 82 - 314
Target Start/End: Complemental strand, 2919963 - 2919730
Alignment:
Q  82 tgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttcc 180  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||| || ||||||||||||| ||||||||||||    
T  2919963 tgaaaaaacacgttcaacacttgcagttgctaccggcaagagcaaaaccaacttcaaaagttaataaaccataacaaatgtgttgcatttatttgtttcc 2919864  T
Q  181 acaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataattcttaagttgagtgagtaacgcca 280  Q
    | |||||||||||||||||| ||||||| || ||||||| ||| |||||||||| ||||||||||||| |||||| | |||||||||  | |||||||||    
T  2919863 ataagttttgcacaaagatccgaaagccgtttcaacttagcaaattttgggtcaaatcgaacatttgttacataactattaagttgatggtgtaacgcca 2919764  T
Q  281 cttcaggaacatctataaaatcatttggataaaa 314  Q
     |||    |||||||| |||| |||| |||||||    
T  2919763 attccaacacatctattaaatgattttgataaaa 2919730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 87 - 314
Target Start/End: Original strand, 6689385 - 6689613
Alignment:
Q  87 aaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaag 185  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||| | |||||||||||||| |||||||||||| ||||||    
T  6689385 aaacacgttcaacacttgcagttgctaccggcaagagcaaagtcaacttcaaaagcttataaatcatagcaaatgtgttgtacttatttgttttcacaag 6689484  T
Q  186 ttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataattcttaagttgagtgagtaacgccacttca 285  Q
    |||| ||| ||||||||||||||||| ||||||| ||| ||| ||| ||||| ||| |||| |||||||||| |||||||||  | ||||||||||||      
T  6689485 ttttacacgaagatctgaaagccctttcaacttagcaaatttagggccagattgaaaatttataacataatttttaagttgatggtgtaacgccactttc 6689584  T
Q  286 ggaacatctataaaatcatttggataaaa 314  Q
    |  | ||||||||||||||||||||||||    
T  6689585 gacatatctataaaatcatttggataaaa 6689613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 152 - 316
Target Start/End: Complemental strand, 19267054 - 19266890
Alignment:
Q  152 tagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaac 251  Q
    ||||| ||||| |||| | |||||||| ||||||||||||| ||||||||||||||||||  || ||| ||| |||||||||| ||||||||||||||||    
T  19267054 tagcatatgtgctgcattaatttgttttcacaagttttgcataaagatctgaaagcccttttaatttagcaaattttgggtcaaatcgaacatttgtaac 19266955  T
Q  252 ataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaatt 316  Q
    |||||| |||||||||  | ||||||||||||| |  |||||||| |||||||||||||||||||    
T  19266954 ataatttttaagttgatggcgtaacgccacttccgacacatctattaaatcatttggataaaatt 19266890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 21 - 198
Target Start/End: Original strand, 30705411 - 30705588
Alignment:
Q  21 ggtcatttatccactaatcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caa 119  Q
    ||||||||| ||||| |||| |||||||||||| || || | |||||||||  ||||| ||||||||| ||  ||||| ||||||| ||||||||| |||    
T  30705411 ggtcatttagccactgatcaccgattttgttacatagttgattcttcacaatcttcatagctgaaaaa-catattcaaaacttgcaattgctaccgacaa 30705509  T
Q  120 gagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaaga 198  Q
    ||||||||  |||||||||  |||||||||| |||||||| | || ||| |||||| ||||||||||||||||||||||    
T  30705510 gagcaaagttaacttcaaatatttataaaccatagcaaatattttacacctatttgcttccacaagttttgcacaaaga 30705588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 367 - 477
Target Start/End: Complemental strand, 11842938 - 11842824
Alignment:
Q  367 aaggaatttcaaaatgaatcacagtcaagtaaactagttattagctttccaattgaaa--ttaga--atatctaccactttagcttctagagtatgtgtt 462  Q
    ||||||| |||| ||||||  |||||||||||||||| ||||||||||||| ||||    |||||  |||||||||||||||||||||||||||||||||    
T  11842938 aaggaatgtcaagatgaattgcagtcaagtaaactagatattagctttccagttgatcctttagacaatatctaccactttagcttctagagtatgtgtt 11842839  T
Q  463 tcctcaaacgtcaaa 477  Q
    |||||||| ||||||    
T  11842838 tcctcaaatgtcaaa 11842824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 97 - 197
Target Start/End: Complemental strand, 25085338 - 25085237
Alignment:
Q  97 aacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaa 195  Q
    |||| |||| |||||||||| ||| |||||||| | ||||||||| |||| || | ||| ||||||||||||||||||||||| ||||||||||||||||    
T  25085338 aacatttgcggttgctaccgacaaaagcaaagcaaccttcaaaagcttatgaatcatagtaaatgtgttgcacttatttgttttcacaagttttgcacaa 25085239  T
Q  196 ag 197  Q
    ||    
T  25085238 ag 25085237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 22260250 - 22260310
Alignment:
Q  124 aaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaag 185  Q
    |||||||| |||||||| ||||||||  |||||||||||||| |||||||||||||||||||    
T  22260250 aaagccaaattcaaaagcttataaaca-tagcaaatgtgttgtacttatttgtttccacaag 22260310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 203; Significance: 1e-110; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 23 - 316
Target Start/End: Original strand, 38573101 - 38573395
Alignment:
Q  23 tcatttatccactaatcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caaga 121  Q
    ||||||| ||| | |||||| |||||||||||||||||| |||||||||||||| | |||||||||||| | ||||||||||||||||||| || |||||    
T  38573101 tcatttagccattgatcatcaattttgttacttaatttattcttcacaactttcgtagctgaaaaaacatgatcaacacttgcagttgctatcggcaaga 38573200  T
Q  122 gcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaac 221  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  38573201 gcaaagccaacttcaaaagtttataaacaatagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatttgaaagcccttacaacttaac 38573300  T
Q  222 aacttttgggtcagatcgaacatttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaatt 316  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||| ||||| ||||||||||||||||  ||| |||||||||    
T  38573301 aacttttgggtcagatcgaacatctgtaacataattcttaagctgagtgcgtaacgctacttccggaacatctataaaattgttttgataaaatt 38573395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 23 - 314
Target Start/End: Original strand, 24310001 - 24310293
Alignment:
Q  23 tcatttatccactaatcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caaga 121  Q
    ||||||| ||||  |||||| ||||| |||| ||  ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||  |||||    
T  24310001 tcatttaaccaccgatcatccattttattacatatgttactcttcacaactttcatatctgaaaaaacacgttcaacacttgcagttgctaccaacaaga 24310100  T
Q  122 gcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaac 221  Q
    |||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||| || |    
T  24310101 gcaaagtcaacttcaaaagtttataaaccatagcaaatgtgtcgcacttatttgtttccacaagttttgcacacagatctgaaagccctttcaacatagc 24310200  T
Q  222 aacttttgggtcagatcgaacatttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 314  Q
    || ||||| |||||||||||||||||||||||||||||||||||| ||| |||| |||||||| || ||||||||||||||||||||||||||    
T  24310201 aaattttgagtcagatcgaacatttgtaacataattcttaagttgcgtgtgtaatgccacttccggcacatctataaaatcatttggataaaa 24310293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 64 - 314
Target Start/End: Original strand, 23778423 - 23778672
Alignment:
Q  64 cttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctacc-gcaagagcaaagccaacttcaaaagtttataaaccctagcaaatgtg 162  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  23778423 cttcacaactttcatagctaaaaaaacacgttcaacacttgcagttgctaccagcaagagcaaagccaacttcaaaagtttataaaccatagcaaatgtg 23778522  T
Q  163 ttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataattcttaa 262  Q
    ||||| ||||||||||||||||||||  ||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  23778523 ttgcatttatttgtttccacaagttt--cacaaagatcttaaagccctttcaacttaacaaattttgggtcagatcgaacatttgcaacataattcttaa 23778620  T
Q  263 gttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 314  Q
    |||||  | |||||| |||||| || ||||||||||||||||||||||||||    
T  23778621 gttgacggggtaacgtcacttccggcacatctataaaatcatttggataaaa 23778672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 32 - 314
Target Start/End: Complemental strand, 36478014 - 36477731
Alignment:
Q  32 cactaatcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagcca 130  Q
    |||| |||||| |||||||||| ||  ||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||| ||| ||||||||||    
T  36478014 cactgatcatccattttgttacataggttactcttcacaactttcatatctgaaaaaacacgttcaacacttgccgttgctaccgacaaaagcaaagcca 36477915  T
Q  131 acttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgg 230  Q
    ||||||||||||||||   | ||||||||| ||||||||||||| ||| |||| ||||||||||||||| ||||||||||| ||||||| ||| ||||||    
T  36477914 acttcaaaagtttatagggcatagcaaatgcgttgcacttatttattttcacatgttttgcacaaagatatgaaagccctttcaacttagcaaattttgg 36477815  T
Q  231 gtcagatcgaacatttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 314  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||  || ||||||||||||| |||| |||||||    
T  36477814 gtcagatcgaacatttgtaacataattcttaagttgagtgtgtaacgccactttcggcacatctataaaattattttgataaaa 36477731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 22 - 309
Target Start/End: Original strand, 7856623 - 7856907
Alignment:
Q  22 gtcatttatccactaatcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caag 120  Q
    |||||||| ||||| |||| | |||||||||  ||  ||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||| |||     
T  7856623 gtcatttagccactgatcacccattttgttatataggttactcttcacaaatttcatagctgaaaaa-cacgttcaacacttgcagttgctaccggcaaa 7856721  T
Q  121 agcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaa 220  Q
    |||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |    
T  7856722 agcaaagccaacttcaaaagtttataaaccataggaaacgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttttaactt-a 7856820  T
Q  221 caacttttgggtcagatcgaacatttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttgga 309  Q
     || | |||||||||||||||||||||||||  ||||||||| ||||||  ||||| ||||||| || |||||||||||||||||||||    
T  7856821 gaaatgttgggtcagatcgaacatttgtaac--aattcttaaattgagttcgtaacaccacttccggcacatctataaaatcatttgga 7856907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 23 - 313
Target Start/End: Original strand, 26903275 - 26903566
Alignment:
Q  23 tcatttatccactaatcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caaga 121  Q
    ||||||| ||| | |||| | |||||||||| ||| | |||||||||||  ||||| |||||||||||||||||||||||||||||||| |||| |||||    
T  26903275 tcatttaaccattgatcacccattttgttacgtaaatgactcttcacaatcttcatagctgaaaaaacacgttcaacacttgcagttgcaaccggcaaga 26903374  T
Q  122 gcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaac 221  Q
    ||||||||||||||||||| ||| |||||  ||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||  |    
T  26903375 gcaaagccaacttcaaaagcttaaaaaccaaagcaaatgtcttgcacttatttgtttccacaagtattgcacaaagatccgaaagccctttcaactttgc 26903474  T
Q  222 aacttttgggtcagatcgaacatttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaa 313  Q
    || |||||| ||||||  ||||||| |||||||||| | ||||||  || | ||| ||||||| |  ||||||| |||||||||||||||||    
T  26903475 aaattttggatcagatttaacatttctaacataattatgaagttgtctgcgcaactccacttccgacacatctacaaaatcatttggataaa 26903566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 23 - 313
Target Start/End: Complemental strand, 36617765 - 36617474
Alignment:
Q  23 tcatttatccactaatcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caaga 121  Q
    ||||||| ||| | |||| | |||||||||| ||| | |||||||||||  ||||| |||||||||||||||||||||||||||||||| |||| |||||    
T  36617765 tcatttaaccattgatcacccattttgttacgtaaatgactcttcacaatcttcatagctgaaaaaacacgttcaacacttgcagttgcaaccggcaaga 36617666  T
Q  122 gcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaac 221  Q
    ||||||||||||||||||| ||| |||||  ||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||  |    
T  36617665 gcaaagccaacttcaaaagcttaaaaaccaaagcaaatgtcttgcacttatttgtttccacaagtattgcacaaagatccgaaagccctttcaactttgc 36617566  T
Q  222 aacttttgggtcagatcgaacatttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaa 313  Q
    || |||||| ||||||  ||||||| |||||||||| | ||||||  || | ||| ||||||| |  ||||||| |||||||||||||||||    
T  36617565 aaattttggatcagatttaacatttctaacataattatgaagttgtctgcgcaactccacttccgacacatctacaaaatcatttggataaa 36617474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 326 - 491
Target Start/End: Complemental strand, 52808236 - 52808069
Alignment:
Q  326 gcaattgaaattgaaactccaggtttctgcataaattgtttaaggaatttcaaaatgaatcacagtcaagtaaactagttattagctttccaattga--a 423  Q
    ||||||| || ||||||||||||||| ||||| ||||||||||||||| ||||||||||||  | ||||||||||||||||||||||||| ||||||       
T  52808236 gcaattggaaatgaaactccaggtttttgcatgaattgtttaaggaatgtcaaaatgaatcttaatcaagtaaactagttattagctttcaaattgatcc 52808137  T
Q  424 attagaatatctaccactttagcttctagagtatgtgtttcctcaaacgtcaaattgcttatatatct 491  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  52808136 tttagaatatctaccactttagcttctagagtatgtgtttcctcaaacgtcaaattgattacatatct 52808069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 163 - 314
Target Start/End: Complemental strand, 7728899 - 7728748
Alignment:
Q  163 ttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataattcttaa 262  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||| ||| |||||||||||||  |||||||||||||||||||||||    
T  7728899 ttgcacttatttatttccacaagttttgcacaaagatctgaaaaccctttcaacttagcaaattttgggtcagatataacatttgtaacataattcttaa 7728800  T
Q  263 gttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 314  Q
    ||||||||  |||||||||||| |  ||||||||||||||||||||||||||    
T  7728799 gttgagtgcataacgccacttccgacacatctataaaatcatttggataaaa 7728748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 85 - 265
Target Start/End: Complemental strand, 25032177 - 25031993
Alignment:
Q  85 aaaaacacgttcaacacttgcagttgctaccgc---aagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttcca 181  Q
    |||||||||||||||||||||||||||||||||   ||||||||| ||||||||||||||| ||||||| ||  |||||||||||| |||||||||||||    
T  25032177 aaaaacacgttcaacacttgcagttgctaccgcggcaagagcaaaaccaacttcaaaagttaataaaccataataaatgtgttgcatttatttgtttcca 25032078  T
Q  182 caagt-tttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataattcttaagtt 265  Q
    ||||| |||||||||||||||||||||| || ||||||  ||| |||||| | | || |||||||||||||||||||||||||||    
T  25032077 caagtatttgcacaaagatctgaaagccgtttcaacttgccaaattttggattaaattgaacatttgtaacataattcttaagtt 25031993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 44 - 314
Target Start/End: Original strand, 36475613 - 36475886
Alignment:
Q  44 attttgttacttaatttactcttcacaactttcatggctgaaaaa-acacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagt 141  Q
    |||||||||| ||  |||||||| | ||||||||| ||||||||| |||| ||||||  ||||||||||||||| |||||| ||||||||||| ||| |     
T  36475613 attttgttacataggttactctttagaactttcatagctgaaaaacacacattcaaccgttgcagttgctaccgacaagagaaaagccaacttaaaaggc 36475712  T
Q  142 ttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaa-cttttgggtcagatcga 240  Q
    || |||| | || |||||||||||||||| ||||||||||||| ||||| |||||||| ||||||||||| ||||||| |||  |||| ||||| ||  |    
T  36475713 ttctaaatcataacaaatgtgttgcacttgtttgtttccacaaattttggacaaagatttgaaagccctttcaacttagcaatttttttggtcaaattaa 36475812  T
Q  241 acatttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 314  Q
    |||||||||||||||||| ||||||||  | |||||||||| || || ||| || |||||||||||||||||||    
T  36475813 acatttgtaacataattcctaagttgatggtgtaacgccacatccggcacacctgtaaaatcatttggataaaa 36475886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 163 - 314
Target Start/End: Original strand, 8034854 - 8035005
Alignment:
Q  163 ttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataattcttaa 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||| ||||| || |||||||||||| | |||||||||    
T  8034854 ttgcacttatttgtttccacaagttttgcacaaagatctgaaagccctttcaacttagcaaattttaggtcacatagaacatttgtaatacaattcttaa 8034953  T
Q  263 gttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 314  Q
    |||||||| || |||||||||  |  ||||||||||||||||||||||||||    
T  8034954 gttgagtgtgtgacgccactttcgacacatctataaaatcatttggataaaa 8035005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 22 - 314
Target Start/End: Complemental strand, 26285803 - 26285521
Alignment:
Q  22 gtcatttatccactaatcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccgcaa-g 120  Q
    |||||||| |||||||||| | |||||||||| |   |||||||||||||||||||   || ||||||||  ||||||||||| |||||||| || || |    
T  26285803 gtcatttagccactaatcacccattttgttacattggttactcttcacaactttcaaatctaaaaaaacattttcaacacttgtagttgctaacggaaag 26285704  T
Q  121 agcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaa 220  Q
    ||||||| |||||||||||| ||||||||| ||  |||| ||||||||||||||||||||           |||| ||||||||||||||| |||||||     
T  26285703 agcaaagtcaacttcaaaagcttataaaccataataaatttgttgcacttatttgtttcc-----------acaacgatctgaaagccctttcaacttag 26285615  T
Q  221 caacttttgggtcagatcgaacatttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 314  Q
     || |||| |||||||||||| ||||||||||||||| |||||||||  | ||||| ||||||| |  |||| |||||||||||||||||||||    
T  26285614 taaatttttggtcagatcgaaaatttgtaacataattattaagttgacggcgtaacaccacttccgacacatttataaaatcatttggataaaa 26285521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 323 - 477
Target Start/End: Original strand, 53286755 - 53286911
Alignment:
Q  323 cttgcaattgaaattgaaactccaggtttctgcataaattgtttaaggaatttcaaaatgaatcacagtcaagtaaactagttattagctttccaattga 422  Q
    ||||| |||| |||||||||||| ||||||||||||| |||| ||||||||  ||| ||||||| |||||||||||||||| ||||||||||||| ||||    
T  53286755 cttgctattggaattgaaactcctggtttctgcataagttgtataaggaatgacaagatgaatcgcagtcaagtaaactagatattagctttccagttga 53286854  T
Q  423 --aattagaatatctaccactttagcttctagagtatgtgtttcctcaaacgtcaaa 477  Q
        |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  53286855 tcctttagaatatctaccactttagcttctagagtatgtgtttcctcaaatgtcaaa 53286911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 322 - 491
Target Start/End: Original strand, 54139775 - 54139950
Alignment:
Q  322 tcttgcaattgaaattgaaactccaggtttctgcataaattgtttaaggaatttcaaaatgaatcacagtcaagtaaactagttattagctttccaattg 421  Q
    |||||| |||| |||||||||||| | |||||| |||| |||| |||||||| |||||||||||| |||||||||||||||||||||||| ||||  |||    
T  54139775 tcttgctattggaattgaaactccggctttctgaataatttgtataaggaatgtcaaaatgaatcgcagtcaagtaaactagttattagcgttccggttg 54139874  T
Q  422 a--aattagaatatctaccactt----tagcttctagagtatgtgtttcctcaaacgtcaaattgcttatatatct 491  Q
    |    || |||||||| ||||||    |||||||||||||| ||||||||||||| ||||||||| ||| ||||||    
T  54139875 atccttttgaatatctgccactttagctagcttctagagtacgtgtttcctcaaatgtcaaattgattagatatct 54139950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 65 - 179
Target Start/End: Complemental strand, 35502465 - 35502350
Alignment:
Q  65 ttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgt 163  Q
    ||||||||||| || |||||||| |||  ||||||||||||| ||||||||  | ||||||||  |||||||||||| ||||||| | || |||||| ||    
T  35502465 ttcacaacttttatagctgaaaatacatattcaacacttgcaattgctacccacgagagcaaaatcaacttcaaaagcttataaatcataacaaatgggt 35502366  T
Q  164 tgcacttatttgtttc 179  Q
    ||||||||||||||||    
T  35502365 tgcacttatttgtttc 35502350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 59 - 114
Target Start/End: Complemental strand, 52308836 - 52308781
Alignment:
Q  59 ttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctac 114  Q
    |||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||    
T  52308836 ttactcttcacaacattcatagctgaaaaaatacgttcaacacttgcagttgctac 52308781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 80 - 179
Target Start/End: Original strand, 30136769 - 30136866
Alignment:
Q  80 gctgaaaaaacacgttcaacacttgcagttgcta-ccgcaagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgttt 178  Q
    ||||||||||||||||||||||||||| |||||| || ||| |||||  | ||||| ||||| ||||||||| || ||||| ||||||||||||||||||    
T  30136769 gctgaaaaaacacgttcaacacttgcaattgctacccacaatagcaa--ctaactt-aaaagcttataaaccataacaaatatgttgcacttatttgttt 30136865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 80 - 179
Target Start/End: Original strand, 30142898 - 30142995
Alignment:
Q  80 gctgaaaaaacacgttcaacacttgcagttgcta-ccgcaagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgttt 178  Q
    ||||||||||||||||||||||||||| |||||| || ||| |||||  | ||||| ||||| ||||||||| || ||||| ||||||||||||||||||    
T  30142898 gctgaaaaaacacgttcaacacttgcaattgctacccacaatagcaa--ctaactt-aaaagcttataaaccataacaaatatgttgcacttatttgttt 30142994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 80 - 179
Target Start/End: Original strand, 30146320 - 30146417
Alignment:
Q  80 gctgaaaaaacacgttcaacacttgcagttgcta-ccgcaagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgttt 178  Q
    ||||||||||||||||||||||||||| |||||| || ||| |||||  | ||||| ||||| ||||||||| || ||||| ||||||||||||||||||    
T  30146320 gctgaaaaaacacgttcaacacttgcaattgctacccacaatagcaa--ctaactt-aaaagcttataaaccataacaaatatgttgcacttatttgttt 30146416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 41897717 - 41897777
Alignment:
Q  123 caaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccaca 183  Q
    |||||| ||||||||||| |||||||   ||||||||||||||||||||||||||| ||||    
T  41897717 caaagctaacttcaaaagcttataaataatagcaaatgtgttgcacttatttgttttcaca 41897777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 179
Target Start/End: Complemental strand, 6714092 - 6714029
Alignment:
Q  116 gcaagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttc 179  Q
    ||||||| ||||| ||| ||||||| |||||| || || |||||||||||||| ||||||||||    
T  6714092 gcaagagtaaagctaacctcaaaagcttataagccataacaaatgtgttgcacctatttgtttc 6714029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 397
Target Start/End: Original strand, 1924243 - 1924293
Alignment:
Q  348 gtttctgcataaattgtttaagg-aatttcaaaatgaatcacagtcaagta 397  Q
    |||||||||| |||||||||||| ||| ||||||||||||||| |||||||    
T  1924243 gtttctgcatgaattgtttaaggtaatgtcaaaatgaatcacaatcaagta 1924293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 23 - 95
Target Start/End: Complemental strand, 25070699 - 25070627
Alignment:
Q  23 tcatttatccactaatcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgtt 95  Q
    ||||||| ||| | |||| | |||||||||| ||| | |||||||||||  ||||| ||||||||||||||||    
T  25070699 tcatttaaccattgatcacccattttgttacgtaaatgactcttcacaatcttcatagctgaaaaaacacgtt 25070627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 84 - 321
Target Start/End: Original strand, 6226868 - 6227106
Alignment:
Q  84 aaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccac 182  Q
    |||| ||||| ||||||||||||||||||| || ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6226868 aaaatacacggtcaacacttgcagttgctatcggcaagagcaaagtcaacttcaaaagtttataaaccatagcaaatgtgttgcacttatttgtttccac 6226967  T
Q  183 aagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataattcttaagttgagtgagtaacgccact 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||    
T  6226968 aagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttttaacataattcttaagttgagtgtgtaacgctact 6227067  T
Q  283 tcaggaacatctataaaatcatttggataaaatttagtc 321  Q
    || |||||||||||||||| |||||||||||||| ||||    
T  6227068 tccggaacatctataaaataatttggataaaattcagtc 6227106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 22 - 314
Target Start/End: Original strand, 25031069 - 25031361
Alignment:
Q  22 gtcatttatccactaatcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caag 120  Q
    ||||||||  |||| |||| | |||||||||| ||  ||| ||||||||||||||||   ||||||||||||||||||| ||||||||| ||||| ||||    
T  25031069 gtcatttagtcacttatcacccattttgttacataggttaatcttcacaactttcatatttgaaaaaacacgttcaacaattgcagttgttaccggcaag 25031168  T
Q  121 agcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaa 220  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||   ||||||     
T  25031169 agcaaagtcaacttcaaaagtttataaaccatagcaaatgtgttgcatttatttgtttccacaagttttgcacaaagatctgaaagccctctgaacttag 25031268  T
Q  221 caacttttgggtcagatcgaacatttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 314  Q
    ||| |||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |  ||||||||||||||||||||||||||    
T  25031269 caa-ttttaggtcagatcgaacatttgtaacataactcttaagttgagtgtgtaacgccacttccgacacatctataaaatcatttggataaaa 25031361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 320 - 491
Target Start/End: Original strand, 23707191 - 23707362
Alignment:
Q  320 tctcttgcaattgaaattgaaactccaggtttctgcataaattgtttaaggaatttcaaaatgaatcacagtcaagtaaactagttattagctttccaat 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23707191 tctcttgcaattgaaattgaaactccaggtttctgcataaattgtttaaggaatttcaaaatgaatcacagtcaagtaaactagttattagctttccaat 23707290  T
Q  420 tgaaattagaatatctaccactttagcttctagagtatgtgtttcctcaaacgtcaaattgcttatatatct 491  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  23707291 tgaaattagaatatctaccactttagcttctagagtatgtgtttcctcaaacgtcaaattgcttacatatct 23707362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 59 - 314
Target Start/End: Original strand, 9477786 - 9478042
Alignment:
Q  59 ttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctacc-gcaagagcaaagccaacttcaaaagtttataaaccctagcaa 157  Q
    |||||||||||||||||||| |||||||||||||||| |||||||||| |||||||  ||| ||| |||||||||||||||| |||||||||| ||||||    
T  9477786 ttactcttcacaactttcatagctgaaaaaacacgtttaacacttgcaattgctactagcatgagaaaagccaacttcaaaactttataaaccatagcaa 9477885  T
Q  158 atgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataatt 257  Q
    |||||||||||||||||||||||||||||||||| || |||||| ||||||||| ||||||| ||| |||||||| |||||||||||||||| |||||||    
T  9477886 atgtgttgcacttatttgtttccacaagttttgcgcatagatcttaaagccctttcaacttagcaaattttgggttagatcgaacatttgtaccataatt 9477985  T
Q  258 cttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 314  Q
    ||||||||||  | ||||| | ||||| || ||||||||||||||||||||||||||    
T  9477986 cttaagttgacagcgtaacactacttccggcacatctataaaatcatttggataaaa 9478042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 21 - 314
Target Start/End: Complemental strand, 10781151 - 10780869
Alignment:
Q  21 ggtcatttatccactaatcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caa 119  Q
    ||||||||| ||||| |||| | |||||||||| ||  ||||||||||  ||||||||  ||||||||||||||| |||||||||||||||||||| |||    
T  10781151 ggtcatttagccactgatcacctattttgttacataggttactcttcaacactttcatatctgaaaaaacacgtt-aacacttgcagttgctaccggcaa 10781053  T
Q  120 gagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaactta 219  Q
    ||||||| ||||||||||||||||||||||  ||| |||||||||||||||||||||||||           ||||||||||||||| |||| |||||||    
T  10781052 gagcaaaaccaacttcaaaagtttataaactatagtaaatgtgttgcacttatttgtttcc-----------acaaagatctgaaagtcctttcaactta 10780964  T
Q  220 acaacttttgggtcagatcgaacatttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 314  Q
     ||| |||| ||||||||||||||| |||||||||||| |||||||||||| ||||||||||||  |  ||||||||||||| ||||||||||||    
T  10780963 gcaaattttaggtcagatcgaacatatgtaacataattattaagttgagtgcgtaacgccactttcgacacatctataaaattatttggataaaa 10780869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 23 - 313
Target Start/End: Complemental strand, 1016993 - 1016702
Alignment:
Q  23 tcatttatccactaatcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caaga 121  Q
    ||||||| ||| | |||| | |||||||||| ||| | |||||||||||  ||||| |||||||||||||||||||||||||||||||| |||| |||||    
T  1016993 tcatttaaccattgatcacccattttgttacgtaaatgactcttcacaatcttcatagctgaaaaaacacgttcaacacttgcagttgcaaccggcaaga 1016894  T
Q  122 gcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaac 221  Q
    ||||||||||||||||||| ||| |||||  ||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||       
T  1016893 gcaaagccaacttcaaaagcttaaaaaccaaagcaaatgtcttgcacttatttgtttccacaagtattgcacaaagatccgaaagccctttcaactttga 1016794  T
Q  222 aacttttgggtcagatcgaacatttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaa 313  Q
    || |||||| ||||||  ||||||| |||||||||| | ||||||  || | ||| ||||||| |  ||||||| |||||||||||||||||    
T  1016793 aaattttggatcagatttaacatttctaacataattatgaagttgtctgcgcaactccacttccgacacatctacaaaatcatttggataaa 1016702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 37 - 314
Target Start/End: Complemental strand, 9539580 - 9539313
Alignment:
Q  37 atcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttc 135  Q
    |||||| |||||||||| ||  ||||||||||||| |||||| |||||||||||||||| ||||||||||||||||| || |||||||||| ||||||||    
T  9539580 atcatccattttgttacataggttactcttcacaattttcatagctgaaaaaacacgtttaacacttgcagttgctatcggcaagagcaaaaccaacttc 9539481  T
Q  136 aaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcag 235  Q
    |||||||||||||||  | ||||||||||||||||||||||||||           ||||||||||| |||||| | ||||||| ||| |||||| ||||    
T  9539480 aaaagtttataaaccaaaacaaatgtgttgcacttatttgtttcc-----------acaaagatctggaagccccttcaacttagcaaattttggatcag 9539392  T
Q  236 atcgaacatttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 314  Q
    ||||||||||||||||||||||||||||||||  |  ||||||||||||    || |||||||||| ||||||||||||    
T  9539391 atcgaacatttgtaacataattcttaagttgatggcataacgccacttccaacacttctataaaattatttggataaaa 9539313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 44 - 313
Target Start/End: Original strand, 34912456 - 34912727
Alignment:
Q  44 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtt 142  Q
    |||||||||| ||  |||||||| ||||||||||| ||||||||||||| |||||||||||||||| ||| || ||||  |||||||||||||||||| |    
T  34912456 attttgttacataggttactcttaacaactttcatagctgaaaaaacacattcaacacttgcagttactatcggcaaggacaaagccaacttcaaaagct 34912555  T
Q  143 tataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaag-cccttacaacttaacaacttttgggtcagatcgaa 241  Q
    |||||||  |||  ||||||||||||||||||||||||| |||||||| ||||||||||||||| |  ||  |||||| ||| ||||  || |||| |||    
T  34912556 tataaactatagtgaatgtgttgcacttatttgtttccagaagttttggacaaagatctgaaagtcattttaaacttagcaaattttaagttagattgaa 34912655  T
Q  242 catttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaa 313  Q
    ||||| ||||||||||| ||||||||  | |||||||||||||  |||||||||||||||||||||||||||    
T  34912656 catttataacataattcctaagttgatggtgtaacgccacttccagaacatctataaaatcatttggataaa 34912727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 21 - 174
Target Start/End: Original strand, 8065103 - 8065257
Alignment:
Q  21 ggtcatttatccactaatcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctacc-gcaa 119  Q
    ||||||||| ||| | |||||| ||||| |||| ||  ||||||||||||| |||||| |||||||||||||||| |||| |||||||||||||| ||||    
T  8065103 ggtcatttaaccaatgatcatccattttattacataggttactcttcacaagtttcatagctgaaaaaacacgtttaacaattgcagttgctaccagcaa 8065202  T
Q  120 gagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttattt 174  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||| ||||||    
T  8065203 gagcaaagccaacttcaaaagtttataaaccataacaaatgtgttgcatttattt 8065257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 25 - 192
Target Start/End: Complemental strand, 27464237 - 27464069
Alignment:
Q  25 atttatccactaatcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagc 123  Q
    ||||| ||||| |||| | |||||||||  || || | |||||  ||||||||| ||||||||||||||||||||| |||||| |||||||| | ||| |    
T  27464237 atttagccactgatcacccattttgttatatagttgattcttccaaactttcatagctgaaaaaacacgttcaacaattgcagctgctaccggctagaac 27464138  T
Q  124 aaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgca 192  Q
    ||||||||||||||||| ||||||| | || ||||||| ||||||||||||||||||||||||||||||    
T  27464137 aaagccaacttcaaaagcttataaatcataacaaatgtattgcacttatttgtttccacaagttttgca 27464069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 163 - 314
Target Start/End: Complemental strand, 42311464 - 42311323
Alignment:
Q  163 ttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataattcttaa 262  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||  |||||| ||| ||||           |||||||||||||||||||  ||    
T  42311464 ttgcacttatttgtttccacaagttttgcataaagatctaaaagccctttgaacttagcaaatttta----------aacatttgtaacataattcacaa 42311375  T
Q  263 gttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 314  Q
    |||||||| |||||| |||||| |  | ||||||||||||||||||||||||    
T  42311374 gttgagtgcgtaacgtcacttccgacatatctataaaatcatttggataaaa 42311323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 44 - 179
Target Start/End: Original strand, 23353534 - 23353669
Alignment:
Q  44 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccgc-aagagcaaagccaacttcaaaagtt 142  Q
    ||||||||||  | || ||| |||||||||||||| ||| ||||||||| ||||||| ||||| |||||||||  ||||||||| ||||||||||||  |    
T  23353534 attttgttacgaagttgactattcacaactttcatagct-aaaaaacactttcaacagttgcaattgctaccggtaagagcaaaaccaacttcaaaaact 23353632  T
Q  143 tataaaccctagcaaatgtgttgcacttatttgtttc 179  Q
    ||||||   ||| |||||||||| || ||||| ||||    
T  23353633 tataaattatagtaaatgtgttgtacctatttatttc 23353669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 31738109 - 31738169
Alignment:
Q  119 agagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttc 179  Q
    ||||||||| |||||| ||||  ||||||| | || ||||||||||||| |||||||||||    
T  31738109 agagcaaagtcaactttaaaaacttataaatcataacaaatgtgttgcatttatttgtttc 31738169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 175; Significance: 5e-94; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 21 - 314
Target Start/End: Original strand, 36745062 - 36745356
Alignment:
Q  21 ggtcatttatccactaatcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caa 119  Q
    ||||||||| ||||  |||| | |||||||||| ||  ||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||| |||    
T  36745062 ggtcatttagccaccgatcacccattttgttacatatgttactcttcacaactttcatatctgaaaaaacacgttcaacacttgcagttgttaccgacaa 36745161  T
Q  120 gagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaactta 219  Q
    |||||||| |||||||||||||||||||||| || |||||||||||||||||| ||||| || || |||||||||||||||||||||||||| |||||||    
T  36745162 gagcaaagtcaacttcaaaagtttataaaccatatcaaatgtgttgcacttatatgttttcataatttttgcacaaagatctgaaagccctttcaactta 36745261  T
Q  220 acaacttttgggtcagatcgaacatttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 314  Q
     |||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     ||||||||||||||||||||||||||    
T  36745262 gcaaactttgggtcagatcgaacatttgtaacataattcttaagttgagtgcgtaacgccactttcaacacatctataaaatcatttggataaaa 36745356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 44 - 313
Target Start/End: Original strand, 43144709 - 43144979
Alignment:
Q  44 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtt 142  Q
    |||||||||| ||  |||||||| ||| ||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  43144709 attttgttacataggttactctttacacctttcatagctgaaaaaatacgttcaacacttgcagttgctaccggcaagagcaaagtcaacttcaaaagtt 43144808  T
Q  143 tataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaac 242  Q
    |||||||| ||||||||||||| || ||||||||||||||||||||||||||||||| ||||| | ||| ||||||| ||| |||| |||||||||||||    
T  43144809 tataaaccatagcaaatgtgttacatttatttgtttccacaagttttgcacaaagatttgaaaactctttcaacttagcaaattttcggtcagatcgaac 43144908  T
Q  243 atttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaa 313  Q
    |||||||| ||||||||||||||||    |||| | ||||||    |||||||| ||||||||||||||||    
T  43144909 atttgtaatataattcttaagttgatgttgtaatgtcacttccaacacatctatgaaatcatttggataaa 43144979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 82 - 321
Target Start/End: Complemental strand, 36633912 - 36633672
Alignment:
Q  82 tgaaaaaacacgttcaacacttgcagttgctacc-gcaagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttcc 180  Q
    |||||||||| ||||||||||||||||||||||| |||| ||||||| |  ||||||||||| ||||||| |||||||||||||||| ||||||||||||    
T  36633912 tgaaaaaacatgttcaacacttgcagttgctaccagcaaaagcaaagtctgcttcaaaagttaataaaccatagcaaatgtgttgcatttatttgtttcc 36633813  T
Q  181 acaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataattcttaagttgagtgagtaacgcca 280  Q
    |||| |||||||||||||| ||||||    | | ||||| ||| |||||| ||| |||||| |||||||||| |||||||||||| |  | |||||||||    
T  36633812 acaaattttgcacaaagatgtgaaagtagattcgacttagcaaattttggatcaaatcgaatatttgtaacacaattcttaagttaatggcgtaacgcca 36633713  T
Q  281 cttcaggaacatctataaaatcatttggataaaatttagtc 321  Q
    |||| || |||||||| ||||||||||||||||| ||||||    
T  36633712 cttccggcacatctattaaatcatttggataaaacttagtc 36633672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 44 - 266
Target Start/End: Complemental strand, 17076579 - 17076356
Alignment:
Q  44 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtt 142  Q
    |||||||||| ||| | |||||||| ||  ||||| ||| ||||||||||||||||||||||| || | |||| |||||| ||||||||| ||||||| |    
T  17076579 attttgttacgtaaatgactcttcagaatcttcatagctaaaaaaacacgttcaacacttgcaattacaaccgacaagagtaaagccaacatcaaaagct 17076480  T
Q  143 tataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaac 242  Q
    ||||||||  ||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||| | | |||||| ||||||  |||    
T  17076479 tataaaccaaagcaaatgtcttgcacttatttgtttccacaagtattgcacaaagatccgaaagccctttcaacttagcgaattttggatcagatttaac 17076380  T
Q  243 atttgtaacataattcttaagttg 266  Q
    |||  |||||||||||| ||||||    
T  17076379 attcctaacataattctgaagttg 17076356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 60 - 267
Target Start/End: Original strand, 25819240 - 25819447
Alignment:
Q  60 tactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctacc-gcaagagcaaagccaacttcaaaagtttataaaccctagcaaa 158  Q
    |||| ||||||||||| || | |||||||||| |||| |||||||||||||||| | ||||||||||| |||| || ||||| | ||||| | |||||||    
T  25819240 tactattcacaactttaatagttgaaaaaacatgttcgacacttgcagttgctatcagcaagagcaaaaccaatttaaaaagct-ataaatcatagcaaa 25819338  T
Q  159 tgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataattc 258  Q
    ||| ||||| ||||||||||||||||||||||||||||||| || |  |||||  |||||| ||| |||||| ||||||  |||||||  ||||| |||     
T  25819339 tgtattgcagttatttgtttccacaagttttgcacaaagatttggattcccttttaacttagcaaattttggatcagatttaacatttacaacattattt 25819438  T
Q  259 ttaagttga 267  Q
     ||||||||    
T  25819439 ctaagttga 25819447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 84 - 179
Target Start/End: Original strand, 39509268 - 39509364
Alignment:
Q  84 aaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttc 179  Q
    |||||||| |||||||||||| | ||| ||||  |||| ||||||||||||||||||||||||||| | || ||||| |||||||||||||| ||||    
T  39509268 aaaaaacaagttcaacacttgtaattgttacccacaagggcaaagccaacttcaaaagtttataaatcgtaacaaatatgttgcacttatttatttc 39509364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 179
Target Start/End: Original strand, 5569121 - 5569242
Alignment:
Q  65 ttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgcta-------ccgcaagagcaaagccaacttcaaaagtttataaaccctagcaa 157  Q
    |||||||||||  | |||||||| |||| ||||||||||||| ||||||       || ||||||||||| |||||||||||| | ||||| | || |||    
T  5569121 ttcacaacttttgtagctgaaaatacacattcaacacttgcaattgctattgctacccacaagagcaaagtcaacttcaaaagctaataaatcataacaa 5569220  T
Q  158 atgtgttgcacttatttgtttc 179  Q
    ||||||||||||||||| ||||    
T  5569221 atgtgttgcacttatttatttc 5569242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 44 - 148
Target Start/End: Complemental strand, 30078202 - 30078095
Alignment:
Q  44 attttgttacttaatttactcttcacaac---tttcatggctgaaaaaacacgttcaacacttgcagttgctacc-gcaagagcaaagccaacttcaaaa 139  Q
    |||||||||| ||||| ||||||||||||   |||||  | |||||||||| |||||||||||| |||||||||| |||||||||||  |||||| ||||    
T  30078202 attttgttacataatt-actcttcacaacaattttcaatgttgaaaaaacatgttcaacacttgaagttgctaccggcaagagcaaaatcaactttaaaa 30078104  T
Q  140 gtttataaa 148  Q
    | |||||||    
T  30078103 gcttataaa 30078095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 121 - 195
Target Start/End: Complemental strand, 11498262 - 11498187
Alignment:
Q  121 agcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatt-tgtttccacaagttttgcacaa 195  Q
    |||||||| ||||||||||| ||||||| | || ||||||  ||||||||||| |||||||||||||| |||||||    
T  11498262 agcaaagcaaacttcaaaagcttataaatcatatcaaatgcattgcacttattatgtttccacaagttatgcacaa 11498187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 121 - 195
Target Start/End: Complemental strand, 11505618 - 11505543
Alignment:
Q  121 agcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatt-tgtttccacaagttttgcacaa 195  Q
    |||||||| ||||||||||| ||||||| | || ||||||  ||||||||||| |||||||||||||| |||||||    
T  11505618 agcaaagcaaacttcaaaagcttataaatcatatcaaatgcattgcacttattatgtttccacaagttatgcacaa 11505543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 121 - 195
Target Start/End: Complemental strand, 11513012 - 11512937
Alignment:
Q  121 agcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatt-tgtttccacaagttttgcacaa 195  Q
    |||||||| ||||||||||| ||||||| | || ||||||  ||||||||||| |||||||||||||| |||||||    
T  11513012 agcaaagcaaacttcaaaagcttataaatcatatcaaatgcattgcacttattatgtttccacaagttatgcacaa 11512937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 121 - 195
Target Start/End: Complemental strand, 11520388 - 11520313
Alignment:
Q  121 agcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatt-tgtttccacaagttttgcacaa 195  Q
    |||||||| ||||||||||| ||||||| | || ||||||  ||||||||||| |||||||||||||| |||||||    
T  11520388 agcaaagcaaacttcaaaagcttataaatcatatcaaatgcattgcacttattatgtttccacaagttatgcacaa 11520313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 121 - 195
Target Start/End: Complemental strand, 11527796 - 11527721
Alignment:
Q  121 agcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatt-tgtttccacaagttttgcacaa 195  Q
    |||||||| ||||||||||| ||||||| | || ||||||  ||||||||||| |||||||||||||| |||||||    
T  11527796 agcaaagcaaacttcaaaagcttataaatcatatcaaatgcattgcacttattatgtttccacaagttatgcacaa 11527721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 37 - 104
Target Start/End: Complemental strand, 34751044 - 34750977
Alignment:
Q  37 atcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttg 104  Q
    |||||| |||||||||| |   |||||||||||||||||||| |||| ||| ||||||||||||||||    
T  34751044 atcatccattttgttacatgggttactcttcacaactttcatagctgtaaagacacgttcaacacttg 34750977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 5070012 - 5070057
Alignment:
Q  59 ttactcttcacaactttcatggctgaaaaaacacgttcaacacttg 104  Q
    ||||||||  |||||||||| |||||||||||||||||||||||||    
T  5070012 ttactcttatcaactttcatagctgaaaaaacacgttcaacacttg 5070057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 97 - 195
Target Start/End: Complemental strand, 11535227 - 11535127
Alignment:
Q  97 aacacttgcagttgctaccgc-aagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatt-tgtttccacaagttttgcaca 194  Q
    |||||||||| || ||||||  || ||| |||| ||||||||||| ||||||| | || ||||||  ||||||||||| ||||| |||||||| ||||||    
T  11535227 aacacttgcactttctaccgataaaagcgaagcaaacttcaaaagcttataaatcatatcaaatgcattgcacttattatgtttacacaagttatgcaca 11535128  T
Q  195 a 195  Q
    |    
T  11535127 a 11535127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 174; Significance: 2e-93; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 23 - 314
Target Start/End: Original strand, 4377406 - 4377699
Alignment:
Q  23 tcatttatccactaatcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caaga 121  Q
    ||||||| ||||| |||| | |||||||||| ||  ||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||| |||||    
T  4377406 tcatttagccactgatcacccattttgttacataggttactcttcacaactttcatatctgaaaaaacacgttcaacacttgcaattgctaccggcaaga 4377505  T
Q  122 gcaaagccaacttcaaaagtttataaaccc-tagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaa 220  Q
    |||||| ||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||      
T  4377506 gcaaagtcaacttcaaaagtttataaaatcatagcaaatgtgttgcacttatttgtttccacaagtcatgcacaaagatctgaaagccctttcaacttgg 4377605  T
Q  221 caacttttgggtcagatcgaacatttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 314  Q
    ||| |||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||  || ||||||||||||| ||||||||||||    
T  4377606 caaattttgggtcagatcgaacatctgtaacataattcttaagttgagtgcgtatcgccactttcggcacatctataaaattatttggataaaa 4377699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 21 - 314
Target Start/End: Original strand, 36247995 - 36248289
Alignment:
Q  21 ggtcatttatccactaatcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caa 119  Q
    ||||||||| ||||| |||||| |||||||||  ||  |||||||||||| |||||||  |||||||||||||||||||||||||||||||||||| |||    
T  36247995 ggtcatttagccactgatcatccattttgttaaataggttactcttcacacctttcatatctgaaaaaacacgttcaacacttgcagttgctaccggcaa 36248094  T
Q  120 gagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaactta 219  Q
    ||||||||||||||||||||||||||||| | || |||| |||||||||||||||||||||||||||||| ||||||| ||| ||| | ||| |||||||    
T  36248095 gagcaaagccaacttcaaaagtttataaatcataacaaaagtgttgcacttatttgtttccacaagttttacacaaaggtctaaaaactctttcaactta 36248194  T
Q  220 acaacttttgggtcagatcgaacatttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 314  Q
    |||| |||| ||||||||||||||| |||||||||| ||||||||| |||| ||||| |||| |  || ||||||||||||||||||||||||||    
T  36248195 acaaattttaggtcagatcgaacatctgtaacataactcttaagttaagtgcgtaacaccaccttcggcacatctataaaatcatttggataaaa 36248289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 44 - 314
Target Start/End: Original strand, 33518221 - 33518491
Alignment:
Q  44 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtt 142  Q
    |||||||||| ||  ||||||||||||||||||||  | |||||||||||| |||||||| ||||||| |||| |||||| ||||||||||| |||||||    
T  33518221 attttgttacataggttactcttcacaactttcatatccgaaaaaacacgtacaacacttacagttgccaccggcaagagtaaagccaactttaaaagtt 33518320  T
Q  143 tataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaac 242  Q
    ||||||||    ||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||  |||||| ||| ||||||||||||||||||    
T  33518321 tataaaccacgacaaatgtgttgcacttatttgtttccacaagatttgcacaaatatctaaaagcccttttaacttagcaaattttgggtcagatcgaac 33518420  T
Q  243 atttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 314  Q
    | |||||||||||||||||| ||||||| ||||||||||||   | ||||||||||||||||||||||||||    
T  33518421 a-ttgtaacataattcttaaattgagtgtgtaacgccactttcagcacatctataaaatcatttggataaaa 33518491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 60 - 244
Target Start/End: Original strand, 2815733 - 2815920
Alignment:
Q  60 tactcttcacaactttcatggctgaaaaaacac--gttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagca 156  Q
    |||||||||||||||| || |||||||||||||  |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||    
T  2815733 tactcttcacaactttaatagctgaaaaaacacacgttcaacacttgcagttgctaccggcaagagcaaagccaacttgaaaagtttataaaccatagca 2815832  T
Q  157 aatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacat 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||    
T  2815833 aatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagccctttcaacttagcaaattttgggtcagatcgaacat 2815920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 82 - 314
Target Start/End: Complemental strand, 50723224 - 50723002
Alignment:
Q  82 tgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttcc 180  Q
    ||||||||||| ||||||||||||||||||||||| |||||| |||| |||||||||||||| |||||||  ||||||||||||||| |||||||         
T  50723224 tgaaaaaacacattcaacacttgcagttgctaccggcaagagtaaagtcaacttcaaaagttaataaaccacagcaaatgtgttgcatttatttg----- 50723130  T
Q  181 acaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataattcttaagttgagtgagtaacgcca 280  Q
          ||| ||||||||||| |||| |||| ||||||| ||| |||||||||| || |||||||||||||||||| ||||||||||  | ||| | |||    
T  50723129 ------ttttcacaaagatcttaaagtcctttcaacttagcaaattttgggtcaaattgaacatttgtaacataatacttaagttgatggcgtagcacca 50723036  T
Q  281 cttcaggaacatctataaaatcatttggataaaa 314  Q
    ||||  | |||| ||| |||||||||||||||||    
T  50723035 cttccagcacatttattaaatcatttggataaaa 50723002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 21 - 178
Target Start/End: Original strand, 2158753 - 2158911
Alignment:
Q  21 ggtcatttatccactaatcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caa 119  Q
    ||||||||| |||  ||||| | |||||||||| ||  |||||||||||||||||||| | ||||||||||| |||||||||| || ||||||||| |||    
T  2158753 ggtcatttagccatcaatcacccattttgttacataggttactcttcacaactttcatagttgaaaaaacacattcaacacttacacttgctaccggcaa 2158852  T
Q  120 gagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgttt 178  Q
    ||||||| ||||||||||||| ||| ||||| |||||||||||||||||||||||||||    
T  2158853 gagcaaaaccaacttcaaaagcttacaaaccatagcaaatgtgttgcacttatttgttt 2158911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 322 - 466
Target Start/End: Complemental strand, 48431920 - 48431774
Alignment:
Q  322 tcttgcaattgaaattgaaactccaggtttctgcataaattgtttaaggaatttcaaaatgaatcacagtcaagtaaactagttattagctttccaattg 421  Q
    ||||||||||| ||||| |||||||||||||||||| ||||||| ||||||| |||||||||||||||  ||||||||||||||||||||||| ||| ||    
T  48431920 tcttgcaattggaattggaactccaggtttctgcatgaattgttaaaggaatgtcaaaatgaatcacaaccaagtaaactagttattagcttttcaactg 48431821  T
Q  422 a--aattagaatatctaccactttagcttctagagtatgtgtttcct 466  Q
    |    ||||||| ||||||| ||||||||||||||||||| ||||||    
T  48431820 atcctttagaatttctaccagtttagcttctagagtatgtctttcct 48431774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 152 - 314
Target Start/End: Original strand, 5882679 - 5882841
Alignment:
Q  152 tagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaac 251  Q
    |||||||||||||||| ||||||||||||| | | ||||||||||||| ||||||||| | ||||||| ||| |||| ||||||||| ||||||| |||     
T  5882679 tagcaaatgtgttgcatttatttgtttccaaatgatttgcacaaagatatgaaagcccattcaacttagcaaattttcggtcagatcaaacatttttaat 5882778  T
Q  252 ataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 314  Q
    ||||||||||||||||  | |||||| |||||| |  |||||||| |||| ||||||||||||    
T  5882779 ataattcttaagttgatggcgtaacgacacttccgacacatctatcaaattatttggataaaa 5882841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 164 - 270
Target Start/End: Original strand, 2185307 - 2185413
Alignment:
Q  164 tgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataattcttaag 263  Q
    ||||||||||||||| ||||||||||| ||||||||||||||| | || ||||||| ||| |||| |||||||| |||||||||||||||| ||||||||    
T  2185307 tgcacttatttgttttcacaagttttgtacaaagatctgaaagtcttttcaacttaccaaattttaggtcagatagaacatttgtaacatagttcttaag 2185406  T
Q  264 ttgagtg 270  Q
    |||||||    
T  2185407 ttgagtg 2185413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 97 - 314
Target Start/End: Original strand, 24153718 - 24153925
Alignment:
Q  97 aacacttgcagttgctaccgc-aagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaa 195  Q
    |||| ||| |||||||||||| |||||||||| |||||||| | | ||||||||  ||| |||||||||||||||||||||||||| ||               
T  24153718 aacatttgtagttgctaccgccaagagcaaagtcaacttcacatgcttataaactatagtaaatgtgttgcacttatttgtttccataa----------- 24153806  T
Q  196 agatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatcta 295  Q
    |||| || |||||||| ||||||  ||| |||||| |||||| |||||||| || |||||||| ||||||||  | ||||||||||||| || |||| ||    
T  24153807 agatttggaagccctttcaactttgcaaattttggatcagattgaacatttttagcataattcataagttgatggtgtaacgccacttccggcacattta 24153906  T
Q  296 taaaatcatttggataaaa 314  Q
    |||||| ||||||||||||    
T  24153907 taaaattatttggataaaa 24153925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 23 - 179
Target Start/End: Original strand, 1112124 - 1112280
Alignment:
Q  23 tcatttatccactaatcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caaga 121  Q
    ||||||| ||| | |||||| |||||||||| || ||  ||||||||||||||||| | ||||||  |||||||||| ||||| |||||| | | ||| |    
T  1112124 tcatttaaccattgatcatccattttgttacatagttggctcttcacaactttcatagttgaaaag-cacgttcaacgcttgccgttgctgctgacaaaa 1112222  T
Q  122 gcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttc 179  Q
    ||||||||||||||||||  ||||||||| |  ||||||||||||||||| |||||||    
T  1112223 gcaaagccaacttcaaaaacttataaaccatcacaaatgtgttgcacttaattgtttc 1112280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 25 - 179
Target Start/End: Complemental strand, 25023211 - 25023057
Alignment:
Q  25 atttatccactaatcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgcta-ccgcaagagc 123  Q
    ||||| ||||| |||||  |||||||||| || || ||| ||||||||||||   || ||||||||| |||||||||||| ||||| ||  | |||||||    
T  25023211 atttagccactgatcattcattttgttacatagttgacttttcacaactttcgcagcagaaaaaacatgttcaacacttgtagttgttattcacaagagc 25023112  T
Q  124 aaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttc 179  Q
    ||| |||||||||||||||||||||   || ||||||| |||||||||||| ||||    
T  25023111 aaaaccaacttcaaaagtttataaa-tataacaaatgtattgcacttatttatttc 25023057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 226 - 314
Target Start/End: Original strand, 2158909 - 2158997
Alignment:
Q  226 tttgggtcagatcgaacatttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 314  Q
    ||||||| |||| |||||||||||||||||  | ||||||||  | |||||||||||||  | ||||||||||||||||||||||||||    
T  2158909 tttgggttagattgaacatttgtaacataaaacctaagttgatggcgtaacgccacttcctgcacatctataaaatcatttggataaaa 2158997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 97 - 195
Target Start/End: Complemental strand, 40407897 - 40407798
Alignment:
Q  97 aacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaa 195  Q
    ||||||| || |||||| || ||| |||||| ||||||| ||||| |||||||   | |||||| |||||||||||||||||||||||||||||| ||||    
T  40407897 aacacttacaattgctatcgacaaaagcaaaaccaactttaaaagcttataaattattgcaaatatgttgcacttatttgtttccacaagttttgtacaa 40407798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 56094925 - 56094965
Alignment:
Q  155 caaatgtgttgcacttatttgtttccacaagttttgcacaa 195  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  56094925 caaatgtgttgcacttatttgtttccataagttttgcacaa 56094965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 97 - 195
Target Start/End: Original strand, 13834173 - 13834272
Alignment:
Q  97 aacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaa 195  Q
    |||| |||| |||||||||| ||| || ||||| ||| ||||||| |||| ||   |||||||| ||| |||||| ||||||||||||||||||||||||    
T  13834173 aacatttgcggttgctaccggcaaaaggaaagctaacctcaaaagcttatgaattgtagcaaatatgtcgcacttgtttgtttccacaagttttgcacaa 13834272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 158 - 257
Target Start/End: Complemental strand, 49078455 - 49078356
Alignment:
Q  158 atgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataatt 257  Q
    |||||||||||||||||||||   |||||||| || |||||||||||||  ||| || ||   ||| ||||| |||| ||||||||||| ||||||||||    
T  49078455 atgtgttgcacttatttgttttttcaagtttttcataaagatctgaaagttctttcagctgtgcaaattttgagtcacatcgaacatttctaacataatt 49078356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 35255142 - 35255208
Alignment:
Q  129 caacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaa 195  Q
    |||||||||||  ||||||| | ||||||||||||| ||||| |||||||||| || ||||||||||    
T  35255142 caacttcaaaaacttataaatcatagcaaatgtgttacacttgtttgtttccataaattttgcacaa 35255208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 192
Target Start/End: Complemental strand, 32934373 - 32934340
Alignment:
Q  159 tgtgttgcacttatttgtttccacaagttttgca 192  Q
    |||||||||||||||||||| |||||||||||||    
T  32934373 tgtgttgcacttatttgttttcacaagttttgca 32934340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 171; Significance: 1e-91; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 60 - 313
Target Start/End: Complemental strand, 33941581 - 33941327
Alignment:
Q  60 tactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaa 158  Q
    ||||||||||||||||||| | ||||||||||||||||||  ||||||||||||||| |||||||||| |||||||||||||||||||| || |||||||    
T  33941581 tactcttcacaactttcatagatgaaaaaacacgttcaacgattgcagttgctaccggcaagagcaaatccaacttcaaaagtttataatccatagcaaa 33941482  T
Q  159 tgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataattc 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||| |||||||||||    
T  33941481 tgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagccctttcaacttagcaaattttgggtcagatcgaacatttataacataattc 33941382  T
Q  259 ttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaa 313  Q
    |||||||||    |||||||||||||  | |||||||||||||||||||| ||||    
T  33941381 ttaagttgacgatgtaacgccacttccagcacatctataaaatcatttgggtaaa 33941327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 23 - 314
Target Start/End: Complemental strand, 2945376 - 2945083
Alignment:
Q  23 tcatttatccactaatcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaa-cacgttcaacacttgcagttgctaccg-caag 120  Q
    ||||||| ||||| |||||| |||||||||  ||  ||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||| ||||    
T  2945376 tcatttaaccactgatcatccattttgttatgtaggttactcttcacaactttcatatctgaaaaaaacacgttcaacacttgcagttgctaccgacaag 2945277  T
Q  121 agcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaa 220  Q
    ||||||| |||||||||||||||||||| | |||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||| |||||||     
T  2945276 agcaaagtcaacttcaaaagtttataaatcatagcaaatgtgttgcatttatttgcttccacaagttttgtacaaagatctgaaagccctttcaacttag 2945177  T
Q  221 caacttttgggtcagatcgaacatttgtaacataattcttaagttgagtga-gtaacgccacttcaggaacatctataaaatcatttggataaaa 314  Q
    ||| |||| ||||||||||||||||||||| |||||||||||||||| ||| |||||| |||||| |  ||||||||||||||||||||||||||    
T  2945176 caaattttcggtcagatcgaacatttgtaatataattcttaagttga-tgacgtaacgtcacttccgacacatctataaaatcatttggataaaa 2945083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 26 - 307
Target Start/End: Original strand, 1691775 - 1692062
Alignment:
Q  26 tttatccactaatcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaaca--cttgcagttgctaccg-caagag 122  Q
    |||||||||| |||| | |||||||||| ||  ||||||||||||||||| || |||||||||||||||||||||  |||||||||||||  | || |||    
T  1691775 tttatccactgatcaccaattttgttacatatgttactcttcacaacttttatagctgaaaaaacacgttcaacatacttgcagttgctattggcatgag 1691874  T
Q  123 caaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaac---tta 219  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||   |||    
T  1691875 caaaaccaacttcaaaagtttataaaccatagcaaatgtgttgcacttatttgtttccataagttttgcacaaagatctgaaagtcctttcaactaatta 1691974  T
Q  220 acaacttttgggtcagatcgaacatttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttg 307  Q
     ||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||| ||| ||| |||||    
T  1691975 gcaaattatgggtcagatcgaacatttgtaacataattcttaagttgagtgcgtaacgccacttctggcacatccatacaattatttg 1692062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 21 - 255
Target Start/End: Original strand, 24658545 - 24658780
Alignment:
Q  21 ggtcatttatccactaatcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caa 119  Q
    ||||||||| ||||  |||||| |||||||||| ||  |||||||| ||||  ||||| ||||||||||||||||||||||||||||||| || || |||    
T  24658545 ggtcatttagccaccgatcatccattttgttacataggttactctttacaatcttcatagctgaaaaaacacgttcaacacttgcagttgttatcggcaa 24658644  T
Q  120 gagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaactta 219  Q
    ||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||    
T  24658645 gagcaaaaccaacttcaaaagtttataaatcatagcaaatgtgttgcacttatttgtttccacaagttttgtgcaaagatctgaaagccctttcaactta 24658744  T
Q  220 acaacttttgggtcagatcgaacatttgtaacataa 255  Q
    |||| |||| ||| | || |||||||||||||||||    
T  24658745 acaaattttcggttaaattgaacatttgtaacataa 24658780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 23 - 313
Target Start/End: Complemental strand, 43265922 - 43265631
Alignment:
Q  23 tcatttatccactaatcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caaga 121  Q
    ||||||| ||| | |||| | |||||||||| ||| | |||||||||||  ||||| |||||||||||||||||||||||||||||||| |||| |||||    
T  43265922 tcatttaaccattgatcacccattttgttacgtaaatgactcttcacaatcttcatagctgaaaaaacacgttcaacacttgcagttgcaaccggcaaga 43265823  T
Q  122 gcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaac 221  Q
    ||||||||||||||||||| ||| |||||  ||||| ||| |||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||  |    
T  43265822 gcaaagccaacttcaaaagcttaaaaaccaaagcaagtgtcttgcacttatttgtttccacaagtattgcacaaagatccgaaagccctttcaactttgc 43265723  T
Q  222 aacttttgggtcagatcgaacatttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaa 313  Q
    || |||||| ||||||  ||||||| |||||||||| | ||||||  || | ||| ||||||| |  ||||||| |||||||||||||||||    
T  43265722 aaattttggatcagatttaacatttctaacataattttgaagttgtctgcgcaactccacttccgacacatctacaaaatcatttggataaa 43265631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 44 - 312
Target Start/End: Complemental strand, 30074588 - 30074330
Alignment:
Q  44 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtt 142  Q
    |||||||||| ||  ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||        
T  30074588 attttgttacataggttactcttcacaactttcatatctgaaaaaacacgttcaacacttgcagttgctaccgacaagagcaaatc-aacttcaaa---- 30074494  T
Q  143 tataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaac 242  Q
          || |||||||||||||||| ||||||||||||| ||||||| ||||||||| ||||||||||| ||||||| ||| |||| | |||||||||||    
T  30074493 ------ccatagcaaatgtgttgcatttatttgtttccaaaagttttacacaaagatttgaaagccctttcaacttagcaaattttcgttcagatcgaac 30074400  T
Q  243 atttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataa 312  Q
    |||||||| ||||||||||||||||  | |||||||||||||    ||||||||||||| ||||||||||    
T  30074399 atttgtaatataattcttaagttgatggtgtaacgccacttccaacacatctataaaattatttggataa 30074330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 21 - 190
Target Start/End: Complemental strand, 38300357 - 38300188
Alignment:
Q  21 ggtcatttatccactaatcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caa 119  Q
    ||||||||| ||||| |||||| ||||||||||||||||||||||| ||||||||||| | |||||||| |||||||||||||||| ||||||||| |||    
T  38300357 ggtcatttagccactgatcatccattttgttacttaatttactctttacaactttcatagatgaaaaaa-acgttcaacacttgcaattgctaccggcaa 38300259  T
Q  120 gagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttg 190  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  38300258 gagcaaagtcaacttcaaaagtttataaaccatagcaaatgtgttgcacttatttgtttccacaagttttg 38300188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 23 - 313
Target Start/End: Complemental strand, 46090171 - 46089882
Alignment:
Q  23 tcatttatccactaatcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caaga 121  Q
    |||||||||||||||||||| | |||||||| || |  |||||||||||||||||| | |||||||||||||||||||||| | |||||||| | |||||    
T  46090171 tcatttatccactaatcatccactttgttacatagtagactcttcacaactttcatagttgaaaaaacacgttcaacactt-cggttgctactggcaaga 46090073  T
Q  122 gcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaac 221  Q
    |||||||| ||||| |||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||| ||||||| |    
T  46090072 gcaaagccgacttccaaagcttataaaccatagcaaatgtgttgcacttatttgttttcacaagttttgcacaaa-atctgaaagtcctttcaacttagc 46089974  T
Q  222 aacttttgggtcagatcgaacatttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaa 313  Q
    || |||  |||||  | ||||| || | ||||||||| ||||||||  |  |||||||||||| |  | | ||||||||| |||||| ||||    
T  46089973 aaatttcaggtcaagttgaacaattattacataattcctaagttgatggcataacgccacttccgacataactataaaattatttgggtaaa 46089882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 186 - 313
Target Start/End: Complemental strand, 38293632 - 38293505
Alignment:
Q  186 ttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataattcttaagttgagtgagtaacgccacttca 285  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||     
T  38293632 ttttgcacaaaaatctgaaagcccttacaacttaacaacttttgggtcagattgaacatttgtaacataattcttaagttgagtgcgtaacgccacttcc 38293533  T
Q  286 ggaacatctataaaatcatttggataaa 313  Q
    |||||||||||||||| |||||||||||    
T  38293532 ggaacatctataaaattatttggataaa 38293505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 163 - 314
Target Start/End: Original strand, 10702820 - 10702971
Alignment:
Q  163 ttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataattcttaa 262  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||| ||||||||||||| ||||||||||||||||||||||||    
T  10702820 ttgcacttatttgtttccacaagttttgcacaaagatctgaaagccttttcaacttagcaaattttgggtcagatagaacatttgtaacataattcttaa 10702919  T
Q  263 gttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 314  Q
    ||| |||| ||||||| |||||  | ||||||| ||||||||||||||||||    
T  10702920 gttcagtgtgtaacgcaacttccagcacatctagaaaatcatttggataaaa 10702971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 84 - 211
Target Start/End: Original strand, 8256734 - 8256862
Alignment:
Q  84 aaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccac 182  Q
    |||||||| |||||||||||||||||| ||||| ||||||||||  |||||||||||| ||||||||  ||||||||||| ||||||||||| |||||||    
T  8256734 aaaaaacatgttcaacacttgcagttgttaccggcaagagcaaaatcaacttcaaaagcttataaacaatagcaaatgtgctgcacttatttatttccac 8256833  T
Q  183 aagttttgcacaaagatctgaaagccctt 211  Q
    ||||||||||||||||||||||| |||||    
T  8256834 aagttttgcacaaagatctgaaacccctt 8256862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 45 - 179
Target Start/End: Original strand, 25233095 - 25233230
Alignment:
Q  45 ttttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagttt 143  Q
    ||||||||| || || ||| |||||||||||  | ||||||||||||||||||||||||||| ||||||||  ||||||||||||||| |||||||| ||    
T  25233095 ttttgttacatagttaactgttcacaacttttgtagctgaaaaaacacgttcaacacttgcacttgctacccacaagagcaaagccaatttcaaaagctt 25233194  T
Q  144 ataaaccctagcaaatgtgttgcacttatttgtttc 179  Q
    ||||| | || |||||||||||||||||||||||||    
T  25233195 ataaatcataacaaatgtgttgcacttatttgtttc 25233230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 61 - 195
Target Start/End: Original strand, 27080575 - 27080710
Alignment:
Q  61 actcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaat 159  Q
    ||||||||  |||||||| ||| |||||| | |||||||||||||||||||||||| ||| ||  |||||||||||||||  ||||||| | ||||||||    
T  27080575 actcttcatgactttcatagcttaaaaaatatgttcaacacttgcagttgctaccgacaaaagagaagccaacttcaaaaacttataaatcatagcaaat 27080674  T
Q  160 gtgttgcacttatttgtttccacaagttttgcacaa 195  Q
    |||||||||||||||||||||||||||||| |||||    
T  27080675 gtgttgcacttatttgtttccacaagttttacacaa 27080710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 61 - 195
Target Start/End: Complemental strand, 27197726 - 27197591
Alignment:
Q  61 actcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaat 159  Q
    ||||||||  |||||||| ||| |||||| | |||||||||||||||||||||||| ||| ||  |||||||||||||||  ||||||| | ||||||||    
T  27197726 actcttcatgactttcatagcttaaaaaatatgttcaacacttgcagttgctaccgacaaaagagaagccaacttcaaaaacttataaatcatagcaaat 27197627  T
Q  160 gtgttgcacttatttgtttccacaagttttgcacaa 195  Q
    |||||||||||||||||||||||||||||| |||||    
T  27197626 gtgttgcacttatttgtttccacaagttttacacaa 27197591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 161 - 314
Target Start/End: Complemental strand, 32221856 - 32221704
Alignment:
Q  161 tgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataattctt 260  Q
    ||||||| || |||||||||||||||||| ||||| ||||||||||||||| ||||||| ||| |||| ||||||||||||||  ||||| |||||| ||    
T  32221856 tgttgcatttgtttgtttccacaagttttacacaaggatctgaaagccctttcaacttagcaatttttcggtcagatcgaaca-ctgtaatataattttt 32221758  T
Q  261 aagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 314  Q
    |||||||  | ||||||||||||| |  ||| |||||||||||||| |||||||    
T  32221757 aagttgatggtgtaacgccacttccgacacaactataaaatcatttcgataaaa 32221704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 201 - 314
Target Start/End: Original strand, 24039500 - 24039613
Alignment:
Q  201 tgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaa 300  Q
    ||||||||||| ||||||| ||| |||||||| |||| ||| |||||||||||||||||||||||||||| ||||  ||||||  || ||||||||||||    
T  24039500 tgaaagccctttcaacttagcaaattttgggttagatagaatatttgtaacataattcttaagttgagtgtgtaataccactttcggcacatctataaaa 24039599  T
Q  301 tcatttggataaaa 314  Q
    ||||||||||||||    
T  24039600 tcatttggataaaa 24039613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 48 - 175
Target Start/End: Original strand, 39785648 - 39785776
Alignment:
Q  48 tgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctacc-gcaagagcaaagccaacttcaaaagtttata 146  Q
    |||||| || || |||||||||||| || || ||||||||||||| ||||||||||||||||||||||  |||||||||| ||||||||||||  |||||    
T  39785648 tgttacatagttgactcttcacaaccttgatagctgaaaaaacacattcaacacttgcagttgctaccaacaagagcaaaaccaacttcaaaaacttata 39785747  T
Q  147 aaccctagcaaatgtgttgcacttatttg 175  Q
     |||  |||||||||||| || |||||||    
T  39785748 caccaaagcaaatgtgttacaattatttg 39785776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 124 - 195
Target Start/End: Complemental strand, 1247910 - 1247839
Alignment:
Q  124 aaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaa 195  Q
    |||| |||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  1247910 aaagtcaacttcaaaagcttataaatcatagcaaatgtgttgcacttatttgtttccacaagttttgcacaa 1247839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 121 - 191
Target Start/End: Original strand, 8062569 - 8062639
Alignment:
Q  121 agcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgc 191  Q
    ||||||||||| |||||||  ||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  8062569 agcaaagccaatttcaaaaacttataaatcatagcaaatgtgttgcacttatttgtttccacaagttttgc 8062639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 121 - 195
Target Start/End: Original strand, 38838337 - 38838411
Alignment:
Q  121 agcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaa 195  Q
    |||||||| ||||||||||| ||||||| | | ||||||||||||| ||||||||||| || |||||||||||||    
T  38838337 agcaaagctaacttcaaaagcttataaatcattgcaaatgtgttgcgcttatttgttttcataagttttgcacaa 38838411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 97 - 195
Target Start/End: Original strand, 25617858 - 25617957
Alignment:
Q  97 aacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaa 195  Q
    |||||||||| ||||||||| |||   ||||  |||||||||||| ||||||| | ||||||||||||| || ||||||||||| |||| ||||||||||    
T  25617858 aacacttgcacttgctaccgacaaatacaaaatcaacttcaaaagcttataaatcatagcaaatgtgttacatttatttgtttcaacaaattttgcacaa 25617957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 44 - 179
Target Start/End: Original strand, 26787423 - 26787560
Alignment:
Q  44 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccgc-aagagcaaagccaacttcaaaa-gt 141  Q
    |||||||||| ||||| | | |||||||||||  | | ||| |||||| ||| |||||||||| ||| |||||  || ||||||  ||||||||||| ||    
T  26787423 attttgttacataattgattgttcacaacttttgtagatgacaaaacatgtttaacacttgcaattgataccgataaaagcaaaatcaacttcaaaaagt 26787522  T
Q  142 ttataaaccctagcaaatgtgttgcacttatttgtttc 179  Q
    ||||||||| || ||||| ||||||||||| |||||||    
T  26787523 ttataaaccataacaaatatgttgcacttacttgtttc 26787560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 179
Target Start/End: Original strand, 33598005 - 33598101
Alignment:
Q  84 aaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttc 179  Q
    ||||||||  ||||||  ||||| ||||||||  ||||||||||||||| || ||||| ||||||| | || ||||||||||||||||| |||||||    
T  33598005 aaaaaacatattcaactattgcaattgctacccacaagagcaaagccaaatttaaaagcttataaatcataacaaatgtgttgcacttaattgtttc 33598101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 156; Significance: 1e-82; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 25 - 314
Target Start/End: Original strand, 44873412 - 44873703
Alignment:
Q  25 atttatccactaatcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaa-cacgttcaacacttgcagttgctaccg-caagag 122  Q
    ||||| |||||||||| | |||||||||| ||  ||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||| ||| ||    
T  44873412 atttaaccactaatcacccattttgttacataggttactcttcacaactttcatatctgaaaaaaacacgttcaacacttgcagttgctaccggcaaaag 44873511  T
Q  123 caaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaaca 222  Q
    |||||||||||||||||||||||||| | || ||| |||||||||| |||||||||| || ||||||||||||||||||||||  |||| |||||||| |    
T  44873512 caaagccaacttcaaaagtttataaatcataacaattgtgttgcacatatttgtttctacgagttttgcacaaagatctgaaatgcctttcaacttaaga 44873611  T
Q  223 acttttgggtcagatcgaacatttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 314  Q
      |||||| |||||||||| || ||||||||||||||||||||||||| ||||| ||||||  || ||||||||||||||||||||||||||    
T  44873612 cattttggatcagatcgaatatatgtaacataattcttaagttgagtgggtaacaccactttcggtacatctataaaatcatttggataaaa 44873703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 21 - 313
Target Start/End: Original strand, 29866288 - 29866581
Alignment:
Q  21 ggtcatttatccactaatcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caa 119  Q
    ||||||||| ||| | |||| | |||||||||| ||  |||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||| |||    
T  29866288 ggtcatttagccattgatcacccattttgttacataggttactcttcacaactttcatagctgaaaaaatacgttaaacacttgcagttgctaccggcaa 29866387  T
Q  120 gagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaactta 219  Q
    || ||| | ||| |||||||||||| ||| | |||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  29866388 gaacaaggtcaagttcaaaagtttagaaatcatagcaaatgtgttgcgtttatttgtttccacaagttttgcacaaagatctgaaaaccctttcaactta 29866487  T
Q  220 acaacttttgggtcagatcgaacatttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaa 313  Q
     ||| |||| ||||||| ||||||||||||| ||||||||||||||||  | |||| | |||||| |  |||||||||||||||||||||||||    
T  29866488 gcaaattttcggtcagaacgaacatttgtaatataattcttaagttgatggtgtaatgtcacttccgacacatctataaaatcatttggataaa 29866581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 21 - 321
Target Start/End: Complemental strand, 24556887 - 24556586
Alignment:
Q  21 ggtcatttatccactaatcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccgc-aa 119  Q
    ||||||||| |||| ||||||| |||||||||| || ||  ||||||||||||||||| | ||||||||||| ||||| |||||||||||||||||  ||    
T  24556887 ggtcatttagccaccaatcatccattttgttacatagttgtctcttcacaactttcatagttgaaaaaacacattcaatacttgcagttgctaccggtaa 24556788  T
Q  120 gagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaactta 219  Q
    ||||||||||||||||||||  ||||||||| || |||||||||||||||||||||||| |||||||||||||||||| | ||||||||||| |||||||    
T  24556787 gagcaaagccaacttcaaaatcttataaaccataacaaatgtgttgcacttatttgttttcacaagttttgcacaaagttatgaaagccctttcaactta 24556688  T
Q  220 acaacttttgggtcagatcgaacatttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaatttag 319  Q
     ||| | ||| ||||||| |||||||| ||||||||||| ||| ||||  | |||||||||||||    || |||| |||||||||||||||||||| ||    
T  24556687 gcaaatcttgagtcagattgaacatttataacataattcctaacttgatggcgtaacgccacttccaccacttctacaaaatcatttggataaaattcag 24556588  T
Q  320 tc 321  Q
    ||    
T  24556587 tc 24556586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 23 - 313
Target Start/End: Original strand, 2148506 - 2148797
Alignment:
Q  23 tcatttatccactaatcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caaga 121  Q
    ||||||| ||||  ||||||  ||||||||| ||||| |||||| ||||| ||||| ||||||||||||||||||||| ||||||||||||||| |||||    
T  2148506 tcatttagccacagatcatcccttttgttacataattgactcttaacaaccttcatagctgaaaaaacacgttcaacatttgcagttgctaccgacaaga 2148605  T
Q  122 gcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaac 221  Q
    ||||||||| ||||||||| ||||||| | ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||   ||||  |    
T  2148606 gcaaagccagcttcaaaagcttataaatcatagaaaatgtgttgcacttatttgttttcacaagttttgcacaaagatctgaaagccctttacactttgc 2148705  T
Q  222 aacttttgggtcagatcgaacatttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaa 313  Q
    || |||||||||||||  ||||||| |||||||||||| |||||||  | | ||||||||||  || |||| || |||||||||||||||||    
T  2148706 aaattttgggtcagatttaacatttataacataattctgaagttgatggcgcaacgccacttatggcacatttaaaaaatcatttggataaa 2148797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 23 - 313
Target Start/End: Complemental strand, 45486183 - 45485892
Alignment:
Q  23 tcatttatccactaatcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caaga 121  Q
    ||||||| ||| | |||| | |||||||||| ||| | |||||||||||  ||||| |||||||||||||||||||||||||||||||| |||| |||||    
T  45486183 tcatttaaccattgatcacccattttgttacgtaaatgactcttcacaatcttcatagctgaaaaaacacgttcaacacttgcagttgcaaccggcaaga 45486084  T
Q  122 gcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaac 221  Q
    ||||||||||||||||||| ||| |||||  ||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||  |    
T  45486083 gcaaagccaacttcaaaagcttaaaaaccaaagcaaatgtcttgcacttatttgtttccacaagtattgcacaaagatccgaaagccctttcaactttgc 45485984  T
Q  222 aacttttgggtcagatcgaacatttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaa 313  Q
    || |||||| ||||||  ||||||| |||||||||| | ||||||  || | ||| ||||||| |  ||||||| |||||||||||||||||    
T  45485983 aaattttggatcagatttaacatttctaacataattatgaagttgtctgcgcaactccacttccgacacatctacaaaatcatttggataaa 45485892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 62 - 314
Target Start/End: Complemental strand, 32161335 - 32161081
Alignment:
Q  62 ctcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccc-tagcaaat 159  Q
    |||||||||| |||||| | |||||||||||||||||||||| |||||||||||| |||||| || |||||||||||||| ||||||| || || |||||    
T  32161335 ctcttcacaattttcatagttgaaaaaacacgttcaacacttacagttgctaccggcaagagtaatgccaacttcaaaagcttataaaaccatatcaaat 32161236  T
Q  160 gtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataattct 259  Q
    |||   |||||||||||||||| |||||||||||||| ||||||||| |||| ||| ||| ||| ||||||||||||| |||||||||||||||||||||    
T  32161235 gtgcaacacttatttgtttccataagttttgcacaaaaatctgaaagtcctttcaatttagcaaattttgggtcagattgaacatttgtaacataattct 32161136  T
Q  260 taagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 314  Q
    ||||||||  | ||||| ||||||  |  |||||||||||||||||||| |||||    
T  32161135 taagttgatggcgtaacaccacttttgatacatctataaaatcatttgggtaaaa 32161081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 61 - 314
Target Start/End: Complemental strand, 6802703 - 6802449
Alignment:
Q  61 actcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaat 159  Q
    |||||||||||||||||| | ||||||||||||| ||| ||||||||||||||||| | |||||||| ||||||||||||| ||||||| | |  |||||    
T  6802703 actcttcacaactttcatagttgaaaaaacacgtgcaatacttgcagttgctaccggcgagagcaaaaccaacttcaaaagcttataaagcatttcaaat 6802604  T
Q  160 gtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataattct 259  Q
    |||||||| ||| ||||||||||| |||||||||||| || |||| | |||| | ||||  ||| ||||||||||||| |||||||| |||||||||||     
T  6802603 gtgttgcatttaattgtttccacatgttttgcacaaaaatatgaaggtcctttcgacttggcaaattttgggtcagattgaacatttataacataattcc 6802504  T
Q  260 taagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 314  Q
    ||||||||  | ||||| ||||||| |  ||||| ||||||||||||| ||||||    
T  6802503 taagttgatggcgtaacaccacttctgacacatccataaaatcatttgaataaaa 6802449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 33 - 195
Target Start/End: Complemental strand, 7681334 - 7681171
Alignment:
Q  33 actaatcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctacc-gcaagagcaaagccaa 131  Q
    |||||||||| |||||||||| || || ||||||||||||||| || || ||||||||| ||||||||||||||  |||||||  ||||||||||  |||    
T  7681334 actaatcatctattttgttacatagttgactcttcacaacttttatagcagaaaaaacatgttcaacacttgcatatgctaccaacaagagcaaaatcaa 7681235  T
Q  132 cttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaa 195  Q
     ||||||||||||||||   ||  |||||||||||||||| |||||| ||||||||||||||||    
T  7681234 tttcaaaagtttataaataataataaatgtgttgcacttacttgttttcacaagttttgcacaa 7681171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 45 - 148
Target Start/End: Complemental strand, 34696983 - 34696879
Alignment:
Q  45 ttttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctacc-gcaagagcaaagccaacttcaaaagttt 143  Q
    ||||||||| ||  ||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||| |||||||||||| ||| |||||||||||    
T  34696983 ttttgttacataggttactcttcacaattttcatagctgaaaaaacacgttcaacacttgcaattgctaccggcaagagcaaagtcaatttcaaaagttt 34696884  T
Q  144 ataaa 148  Q
    |||||    
T  34696883 ataaa 34696879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 97 - 195
Target Start/End: Complemental strand, 41303411 - 41303312
Alignment:
Q  97 aacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaa 195  Q
    |||||||||| |||||| || ||| |||||| ||||||||||||| ||| ||| | ||||||||||||||||||||||||||| ||||||||||||||||    
T  41303411 aacacttgcatttgctatcgacaaaagcaaaaccaacttcaaaagcttacaaatcatagcaaatgtgttgcacttatttgttttcacaagttttgcacaa 41303312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 97 - 195
Target Start/End: Original strand, 3662180 - 3662280
Alignment:
Q  97 aacacttgcagttgctaccgc-aagagcaaagccaacttcaaaag-tttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcaca 194  Q
    |||||||||| |||||||||  || |||||||||||||||||||  |||||||| | ||||||||||| |||||||||||||||||| ||||||||||||    
T  3662180 aacacttgcatttgctaccgttaaaagcaaagccaacttcaaaaactttataaatcatagcaaatgtgctgcacttatttgtttccataagttttgcaca 3662279  T
Q  195 a 195  Q
    |    
T  3662280 a 3662280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 11993656 - 11993599
Alignment:
Q  59 ttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg 116  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  11993656 ttactcttcacaacattcatagctgaaaaaacacgttcaacacttgcagttgctaccg 11993599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 44 - 179
Target Start/End: Original strand, 43421754 - 43421889
Alignment:
Q  44 attttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtt 142  Q
    |||||||||| ||||| ||| |||||||||||||| | | |||||||| |||| ||||||||| || |||||  ||| |||||||||||||| |||||||    
T  43421754 attttgttacataattgacttttcacaactttcatagtt-aaaaaacatgttcgacacttgcaatttctacccacaaaagcaaagccaactttaaaagtt 43421852  T
Q  143 tataaaccctagcaaatgtgttgcacttatttgtttc 179  Q
    |||||||  ||  |||| |||||||||||||| ||||    
T  43421853 tataaactataataaatatgttgcacttatttatttc 43421889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 104
Target Start/End: Original strand, 10381549 - 10381627
Alignment:
Q  26 tttatccactaatcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttg 104  Q
    |||| ||||| |||| | ||||| |||| ||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  10381549 tttagccactgatcacccattttattacataagttactcttcacaactttcatagctgaaaaaacacgttcaacacttg 10381627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 128 - 195
Target Start/End: Complemental strand, 4587160 - 4587093
Alignment:
Q  128 ccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaa 195  Q
    ||||||||||||  ||||||||| | |||||||||||| ||||||||||||||| |||||||||||||    
T  4587160 ccaacttcaaaaacttataaaccattgcaaatgtgttggacttatttgtttccataagttttgcacaa 4587093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 175
Target Start/End: Complemental strand, 7388054 - 7387963
Alignment:
Q  80 gctgaaaaaacacgttcaacacttgcagttgctac-cgcaagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttg 175  Q
    |||||||||||| |||||||||||||| ||||||| | |||||||     |||||||||||| ||||||| | || |||||||||||||| ||||||    
T  7388054 gctgaaaaaacatgttcaacacttgcaattgctactcacaagagc-----caacttcaaaagattataaatcataacaaatgtgttgcacctatttg 7387963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 143; Significance: 6e-75; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 37 - 314
Target Start/End: Complemental strand, 3357059 - 3356782
Alignment:
Q  37 atcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttc 135  Q
    |||||| |||||||||| || |||||||||||||||||| || ||||||||| ||| ||||||||||||||||||||||  ||| ||||||| |||||||    
T  3357059 atcatccattttgttacatagtttactcttcacaacttttatagctgaaaaa-cacattcaacacttgcagttgctaccaacaatagcaaagtcaacttc 3356961  T
Q  136 aaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcag 235  Q
    ||||||||||||| | |||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||| |||| ||||||    
T  3356960 aaaagtttataaatcatagcaaatgtgttgcatttatttgtttccacaggttttgcacaaagatatgaaagccctttcaacttaacaaattttcggtcag 3356861  T
Q  236 atcgaacatttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 314  Q
    ||| ||||||| ||| ||||||| ||||||||  |  |||||||||| | |  ||||||||||||||||||| ||||||    
T  3356860 atcaaacatttataatataattcataagttgatggcataacgccactaccgacacatctataaaatcatttgtataaaa 3356782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 37 - 314
Target Start/End: Original strand, 32033113 - 32033389
Alignment:
Q  37 atcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttc 135  Q
    |||||| |||||||||| ||  |||||||||||||||||||| ||| ||||||| | || ||||||||||| || ||||| |||||||||| ||||||||    
T  32033113 atcatccattttgttacataggttactcttcacaactttcatagctaaaaaaacgcctttaacacttgcagctgttaccggcaagagcaaaaccaacttc 32033212  T
Q  136 aaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcag 235  Q
    ||||||||||||| | |||||||||||||||| |||||||||||||||||||||||| | |  |||  |||||||| ||||||| ||| ||||||||| |    
T  32033213 aaaagtttataaatcatagcaaatgtgttgcatttatttgtttccacaagttttgcaaagacttct--aagccctttcaacttagcaaattttgggtcgg 32033310  T
Q  236 atcgaacatttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 314  Q
    ||||||||||| ||||||||||||||||||||  | | ||| ||||||| |  ||||||||| ||||||||||||||||    
T  32033311 atcgaacatttataacataattcttaagttgatggcgaaacaccacttccgacacatctatacaatcatttggataaaa 32033389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 163 - 314
Target Start/End: Original strand, 6141559 - 6141710
Alignment:
Q  163 ttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataattcttaa 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| ||||||| ||||||||||||||||||||||||    
T  6141559 ttgcacttatttgtttccacaagttttgcacaaagatctgaaagccctttcaacttagcaaattttgtgtcagatagaacatttgtaacataattcttaa 6141658  T
Q  263 gttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 314  Q
    |||||||| ||||||||||||| |  ||||||||||||||||||||||||||    
T  6141659 gttgagtgcgtaacgccacttccgatacatctataaaatcatttggataaaa 6141710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 83 - 321
Target Start/End: Original strand, 11562191 - 11562429
Alignment:
Q  83 gaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttcca 181  Q
    |||||||||| ||||| ||||||| ||||||||| |||||| |||||||||||||| |||| ||||||  |||||||| ||||||| |||||||||||||    
T  11562191 gaaaaaacacattcaa-acttgcaattgctaccggcaagagtaaagccaacttcaatagttaataaactatagcaaatatgttgcatttatttgtttcca 11562289  T
Q  182 caagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataattcttaagttgagtgagtaacgccac 281  Q
    ||||||||||||||| || |||||| | || ||||||| ||| |||||||||| ||| ||||||||||||||||||||||||||||  | ||||||||||    
T  11562290 caagttttgcacaaatatatgaaagtcgtttcaacttagcaaattttgggtcaaatcaaacatttgtaacataattcttaagttgatggcgtaacgccac 11562389  T
Q  282 ttcaggaacatctataaaatcatttggataaaatttagtc 321  Q
    ||| |  |||||||| ||||||||| ||||||||| ||||    
T  11562390 ttccgacacatctattaaatcatttagataaaattcagtc 11562429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 163 - 314
Target Start/End: Original strand, 18458861 - 18459012
Alignment:
Q  163 ttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaacataattcttaa 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||| ||| |||| ||||||||||||||||||| ||||    
T  18458861 ttgcacttatttgtttccacaagttttgcacaaagatctgaaagccctttcaacttagcaaattttaggttagatagaacatttgtaacataattattaa 18458960  T
Q  263 gttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 314  Q
    |||||||| ||||||||||||| || ||||||||||||||||||||||||||    
T  18458961 gttgagtgtgtaacgccacttccggcacatctataaaatcatttggataaaa 18459012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 23 - 257
Target Start/End: Original strand, 4075567 - 4075801
Alignment:
Q  23 tcatttatccactaatcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caaga 121  Q
    ||||||| ||| | |||| | ||||| |||| ||| | |||||||||||  ||||| |||||||||||||||||||||||||||||||| |||| |||||    
T  4075567 tcatttaaccattgatcacccattttattacgtaaatgactcttcacaatcttcatagctgaaaaaacacgttcaacacttgcagttgcaaccggcaaga 4075666  T
Q  122 gcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaac 221  Q
    ||||||||||||||||||| ||| |||||  ||||||||| |||||||||||||||||||||||| ||||||||||||| | |||||||| ||||||  |    
T  4075667 gcaaagccaacttcaaaagcttaaaaaccaaagcaaatgtcttgcacttatttgtttccacaagtattgcacaaagatc-ggaagccctttcaactttgc 4075765  T
Q  222 aacttttgggtcagatcgaacatttgtaacataatt 257  Q
    || |||||| ||||||  ||||||| ||||||||||    
T  4075766 aaattttggatcagatttaacatttctaacataatt 4075801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 21 - 314
Target Start/End: Complemental strand, 18703641 - 18703350
Alignment:
Q  21 ggtcatttatccactaatcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caa 119  Q
    ||||||||||||||||||||   ||| ||||||  |||| | |||||||||||||||| | |||||||| ||||||||||| || ||||||||  | |||    
T  18703641 ggtcatttatccactaatcactaattgtgttacacaattgattcttcacaactttcatagttgaaaaaatacgttcaacacatgtagttgctataggcaa 18703542  T
Q  120 gagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaactta 219  Q
    ||||||||||||||||||||| ||||||||| || ||||| |||| |||||||||||||| || ||||||| |||| ||||| ||| | ||| |||||      
T  18703541 gagcaaagccaacttcaaaagcttataaaccatatcaaatatgtttcacttatttgtttctactagttttgaacaaggatctaaaaactcttgcaact-- 18703444  T
Q  220 acaacttttgggtcagatcgaacatttgtaacataattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaaa 314  Q
     ||| |||||||| |||| |||||||| ||||||||||   |||||||  | | ||| |||||||    || |||| ||||||||||||||||||    
T  18703443 -caaattttgggttagattgaacatttataacataatttcgaagttgatggcgcaaccccacttctaacacttctaaaaaatcatttggataaaa 18703350  T

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Target: chr2; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 153 - 313
Target Start/End: Original strand, 4075822 - 4075982
Alignment:
Q  153 agcaaatgtgttgcacttatttgtttccacaagttttgcacaaagatctgaaagcccttacaacttaacaacttttgggtcagatcgaacatttgtaaca 252  Q
    ||||||||| |||||||||||| ||||||||||| ||||||||||||  |||||||||| ||||||  ||| |||||| ||||||  ||||||| |||||    
T  4075822 agcaaatgtcttgcacttatttatttccacaagtattgcacaaagattcgaaagccctttcaactttgcaaattttggatcagatttaacatttctaaca 4075921  T
Q  253 taattcttaagttgagtgagtaacgccacttcaggaacatctataaaatcatttggataaa 313  Q
    ||||| | ||||||  || | ||| ||||||| |  ||||||| |||||||||||||||||    
T  4075922 taattatgaagttgtctgcgcaactccacttccgacacatctacaaaatcatttggataaa 4075982  T

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Target: chr2; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 65 - 173
Target Start/End: Original strand, 7700509 - 7700618
Alignment:
Q  65 ttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctacc-gcaagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgt 163  Q
    |||| ||||||||| ||||||||||||||||||||| |||||  ||||||| |||||||||||| |||| ||||||| ||||||||| || |||||||||    
T  7700509 ttcataactttcatagctgaaaaaacacgttcaacatttgcaaatgctaccagcaagagcaaagtcaacgtcaaaagcttataaaccataacaaatgtgt 7700608  T
Q  164 tgcacttatt 173  Q
    || |||||||    
T  7700609 tgaacttatt 7700618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 97 - 195
Target Start/End: Original strand, 7165409 - 7165508
Alignment:
Q  97 aacacttgcagttgctaccg-caagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaa 195  Q
    ||||||||| |||||||||| ||| ||||| ||||| |||||||| |||| || | || |||||| || |||||| ||||||||||||||||||||||||    
T  7165409 aacacttgcggttgctaccgacaaaagcaacgccaatttcaaaagcttatgaatcataacaaatgggtcgcacttgtttgtttccacaagttttgcacaa 7165508  T

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Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 65 - 179
Target Start/End: Original strand, 38417898 - 38418013
Alignment:
Q  65 ttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctacc-gcaagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgt 163  Q
    |||||||||||  | || ||||| ||||  |||||||||||| |||||||  ||||||||| |  |||||||||||| ||||||| | || ||||| |||    
T  38417898 ttcacaacttttgtagcagaaaatacacaatcaacacttgcaattgctacatgcaagagcacaatcaacttcaaaagcttataaatcataacaaatatgt 38417997  T
Q  164 tgcacttatttgtttc 179  Q
    ||||||||||| ||||    
T  38417998 tgcacttatttatttc 38418013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 179
Target Start/End: Complemental strand, 16639099 - 16639002
Alignment:
Q  82 tgaaaaaacacgttcaacacttgcagttgctac-cgcaagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttc 179  Q
    |||| |||||||| |||||||||||||||  || || |||||||||  ||||||||||  ||||||| |  || |||||||||||||||||||||||||    
T  16639099 tgaagaaacacgtccaacacttgcagttgtcactcgtaagagcaaaatcaacttcaaacatttataatca-taacaaatgtgttgcacttatttgtttc 16639002  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 144
Target Start/End: Complemental strand, 34878582 - 34878498
Alignment:
Q  61 actcttcacaactttcatggctgaaaaaacacgttcaacacttgcagttgctaccg-caagagcaaagccaacttcaaaagttta 144  Q
    ||||||||||||||| ||   ||||||| || ||||||||||||| ||| |||||| |||  | |||||||||||||||||||||    
T  34878582 actcttcacaacttttataattgaaaaagcatgttcaacacttgccgttactaccgacaaaggtaaagccaacttcaaaagttta 34878498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 197
Target Start/End: Complemental strand, 20966385 - 20966312
Alignment:
Q  121 agcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttccacaagttttgcacaaag 197  Q
    ||||||||||| |||||||  |||||||   |||||||||||||| |||||||| |||  |||||||||| ||||||    
T  20966385 agcaaagccaatttcaaaaacttataaa---tagcaaatgtgttgtacttatttatttttacaagttttgtacaaag 20966312  T

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Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 461310 - 461228
Alignment:
Q  21 ggtcatttatccactaatcatcgattttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttg 104  Q
    |||| |||| |||||||||||| ||||||| || ||  ||||| |||||||||| ||| | |||||||||||||||||||||||    
T  461310 ggtcgtttaaccactaatcatccattttgtcacataggttacttttcacaactt-catagttgaaaaaacacgttcaacacttg 461228  T

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Target: scaffold0684 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 4254 - 4311
Alignment:
Q  47 ttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttg 104  Q
    |||||||||| || ||||||||||  |||||| ||||| |||||||||||||||||||    
T  4254 ttgttacttatttgactcttcacatatttcatagctgagaaaacacgttcaacacttg 4311  T

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Target: scaffold0535 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0535
Description:

Target: scaffold0535; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 118 - 179
Target Start/End: Original strand, 9895 - 9956
Alignment:
Q  118 aagagcaaagccaacttcaaaagtttataaaccctagcaaatgtgttgcacttatttgtttc 179  Q
    |||||||||| |||||||||||  |||||||   || |||||||||||||||||||||||||    
T  9895 aagagcaaagtcaacttcaaaatcttataaaatataacaaatgtgttgcacttatttgtttc 9956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 47 - 104
Target Start/End: Complemental strand, 3864 - 3807
Alignment:
Q  47 ttgttacttaatttactcttcacaactttcatggctgaaaaaacacgttcaacacttg 104  Q
    |||||||||| || ||||||||||  |||||| ||||| |||||||||||||||||||    
T  3864 ttgttacttatttgactcttcacatatttcatagctgagaaaacacgttcaacacttg 3807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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