View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6704_low_5 (Length: 439)
Name: NF6704_low_5
Description: NF6704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6704_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 34682644 - 34682333
Alignment:
| Q |
1 |
atactgagctgcacaacctgcaccacatatgtaccaataattataaattataattataatcatatacattttattcacaatcttgtataatagtgcatga |
100 |
Q |
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| T |
34682644 |
atactgagctgcacaacctgcaccacatatgtaccaataattataa-------------tcatatacattt-attcacaatatagtataatattgcatga |
34682559 |
T |
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| Q |
101 |
gactgtcttgtgatcaatatattcaaatatttgattagtttctaggattcgtttaatatatgtgtaatattgtaaatgttaaagcaactaaagtggatac |
200 |
Q |
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| T |
34682558 |
gactgtcttgtgatcaatat--tcaaatatttgattagtttttaggattcgtttaatatatatgtaatattgcaaatattaaagcaactaaagtggatac |
34682461 |
T |
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| Q |
201 |
tttttactgaaaacaacaattatttaatactaaatgcacaagtcttgagtctttaaactgaccttgcaaagagttggcgagtttgtcgaggtttccggtg |
300 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34682460 |
tttttattgaaaacaacaattatttaatattaaatgcacaagtcttgagtctttaaactgaccttgcaaagagttggcgagtttgtcgaggtttccggtg |
34682361 |
T |
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| Q |
301 |
accaaaacatggagttctagaccagccc |
328 |
Q |
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| T |
34682360 |
accaaaacatggagttctagaccagccc |
34682333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 249 - 328
Target Start/End: Complemental strand, 34698749 - 34698670
Alignment:
| Q |
249 |
gtctttaaactgaccttgcaaagagttggcgagtttgtcgaggtttccggtgaccaaaacatggagttctagaccagccc |
328 |
Q |
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|||||| |||| ||||| |||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
34698749 |
gtctttgaactaaccttccaaagagttggcaagtttgtcgaggtttccggtgactaaaacatagagttctagaccagccc |
34698670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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