View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6704_low_7 (Length: 400)
Name: NF6704_low_7
Description: NF6704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6704_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 7218286 - 7218672
Alignment:
| Q |
1 |
catcgaggagatgtgtaatcgatgcaattataagggttagttactgaatcacaccttattcaatgttttcatcttttttggtaaaaattcttacttttat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7218286 |
catcgaggagatgtgtaatcgatgcaattataagggttagttactgaatcacaccttattcaatgttttcatcttttttggtaaaaattcttacttttat |
7218385 |
T |
|
| Q |
101 |
atgttttcatgtttctttattctgatattgtttatttcagttaccaaatgtagtatggcttctgatgccttcaacatgttggaaagaaaggactgtttcg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7218386 |
atgttttcatgtttctttattctgatattgtttatttcagttaccaaatgtagcatggcttctgatgccttcaacatgttggaaagaaaggactgtttcg |
7218485 |
T |
|
| Q |
201 |
atgtaatgttgattgatactcatatgccaaacatggatgcttatgactttgtccaaagtgttgtcctacaactcaacattcctgtcattagtaagaattt |
300 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7218486 |
atgtaatgttgattgatcctcatatgccaaacatggatgcttatgactttgtccaaagtgttgtcctacaactcaacattcctgtcattagtaagaattt |
7218585 |
T |
|
| Q |
301 |
attcaactttacacaattcacatgattcattcatatatatgtacctcataagtgtgaacttacattattatttcttttttgtagtgatg |
389 |
Q |
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| T |
7218586 |
attcaactttacacaattcacatgattcattc--atatatgtacttaataagtgtgaacttacattattatttcttttttgtagtgatg |
7218672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 128 - 375
Target Start/End: Complemental strand, 7317650 - 7317403
Alignment:
| Q |
128 |
ttgtttatttcagttaccaaatgtagtatggcttctgatgccttcaacatgttggaaagaaaggactgtttcgatgtaatgttgattgatactcatatgc |
227 |
Q |
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| T |
7317650 |
ttgtttatttcagttaccaaatgcaatacagcttctgatgccttgaattcgatggaaagaaaggactgttttgatgtaatgttgattgatgctcatatgc |
7317551 |
T |
|
| Q |
228 |
caaacatggatgcttatgactttgtccaaagtgttgtcctacaactcaacattcctgtcattagtaagaatttattcaactttacacaattcacatgatt |
327 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||| ||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
7317550 |
caaacatggatgtttatgactttgtccaacatgttaccctactactcaaaattcctgtcattagtaagaatttcttcaactttacacaattcacatgatt |
7317451 |
T |
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| Q |
328 |
cattcatatatatgtacctcataagtgtgaacttacattattatttct |
375 |
Q |
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||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
7317450 |
cattcatatatatgtacttaataagtgtgaacttacattattatttct |
7317403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 131 - 314
Target Start/End: Original strand, 7243922 - 7244105
Alignment:
| Q |
131 |
tttatttcagttaccaaatgtagtatggcttctgatgccttcaacatgttggaaagaaaggactgtttcgatgtaatgttgattgatactcatatgccaa |
230 |
Q |
| |
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|||||||||||||||||||||| | |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
7243922 |
tttatttcagttaccaaatgtaacacagcttctgatgccttgaacttgttggaaagaaaggactgtttcgatgtaatgttgattgatcctcatatgccaa |
7244021 |
T |
|
| Q |
231 |
acatggatgcttatgactttgtccaaagtgttgtcctacaactcaacattcctgtcattagtaagaatttattcaactttacac |
314 |
Q |
| |
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| T |
7244022 |
acatggatgcttatgactttgtccaacatgttaccctacaactcaacattcctgtcattagtaagaatttattcaactttacac |
7244105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 8162000 - 8162314
Alignment:
| Q |
1 |
catcgaggagatgtgtaatcgatgcaattataagggttagttactgaatcacaccttattcaatgttttcatcttttttggtaaaaat-tcttactttta |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||| |||||||||| |||||||| || || | ||||||||||||||||||| ||||||||| | |
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| T |
8162000 |
catcgaggagatgtgtaatcgatgcaattatcaaggttaggtactgaatcataccttatttaaagtatccatcttttttggtaaaaatatcttactttaa |
8162099 |
T |
|
| Q |
100 |
tatgttttcatgtttctttattctgatattgtttatttcagttaccaaatgtagtatggcttctgatgccttcaacatgttgga-aagaaaggactgttt |
198 |
Q |
| |
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| ||||||||||||| ||||| | |||||||| | |||||||||||||| | ||||||||||||| || | ||||||| || |||| |||||| |
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| T |
8162100 |
tttgttttcatgtttgtttatctttttattgtttggattagttaccaaatgtaatgtggcttctgatgcattggatttgttggacaaaaaagtgctgttt |
8162199 |
T |
|
| Q |
199 |
cgatgtaatgttgattgatactcatatgccaaacatggatgcttatgactttgtccaaagtgttgtcctacaactcaacattcctgtcattagtaagaat |
298 |
Q |
| |
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||||||||||||||||||| ||| |||||||||||||||||| | ||||||||||||| |||| ||||||||| | ||||||| || ||||||||| |
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| T |
8162200 |
cgatgtaatgttgattgatgctcgtatgccaaacatggatgcctgtgactttgtccaacatgtttccctacaacttcagattcctgctatcagtaagaat |
8162299 |
T |
|
| Q |
299 |
ttattcaactttaca |
313 |
Q |
| |
|
||||| ||||||||| |
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| T |
8162300 |
ttatttaactttaca |
8162314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 128 - 311
Target Start/End: Complemental strand, 7324439 - 7324256
Alignment:
| Q |
128 |
ttgtttatttcagttaccaaatgtagtatggcttctgatgccttcaacatgttggaaagaaaggactgtttcgatgtaatgttgattgatactcatatgc |
227 |
Q |
| |
|
||||||||||||||||||||||| | | ||||||||||| || || ||||||||||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
7324439 |
ttgtttatttcagttaccaaatgcaattcagcttctgatgctttgtacttgttggaaagaaaggactgttatgatgtaatgttgattgatgctcatatgc |
7324340 |
T |
|
| Q |
228 |
caaacatggatgcttatgactttgtccaaagtgttgtcctacaactcaacattcctgtcattagtaagaatttattcaacttta |
311 |
Q |
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| |||||||||| |||||||||||||||| || | ||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
7324339 |
cgaacatggatgtctatgactttgtccaaaatgctaccctacaactcaacattcctgttattagtaagaatttcttcaacttta |
7324256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 317 - 389
Target Start/End: Original strand, 7244127 - 7244202
Alignment:
| Q |
317 |
ttcacatgattcattcatatatat---gtacctcataagtgtgaacttacattattatttcttttttgtagtgatg |
389 |
Q |
| |
|
|||| ||||||||||||||||||| || |||| ||||||| ||| |||||||||||||||||||||||||||| |
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|
| T |
7244127 |
ttcatatgattcattcatatatatattgttactcagaagtgtggactgacattattatttcttttttgtagtgatg |
7244202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 389
Target Start/End: Complemental strand, 7324222 - 7324160
Alignment:
| Q |
327 |
tcattcatatatatgtacctcataagtgtgaacttacattattatttcttttttgtagtgatg |
389 |
Q |
| |
|
|||||||||| ||||||| | | ||| ||||||| ||||||||||||||| ||| |||||||| |
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| T |
7324222 |
tcattcatatttatgtacttaagaagcgtgaactgacattattatttcttatttttagtgatg |
7324160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 389
Target Start/End: Original strand, 8162379 - 8162415
Alignment:
| Q |
353 |
tgtgaacttacattattatttcttttttgtagtgatg |
389 |
Q |
| |
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|||||||| |||||||||||| ||||||||||||||| |
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| T |
8162379 |
tgtgaactcacattattatttgttttttgtagtgatg |
8162415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 128 - 311
Target Start/End: Complemental strand, 22766478 - 22766295
Alignment:
| Q |
128 |
ttgtttatttcagttaccaaatgtagtatggcttctgatgccttcaacatgttggaaagaaaggactgtttcgatgtaatgttgattgatactcatatgc |
227 |
Q |
| |
|
||||||||||||||||||||||| | || |||||||| ||||| ||| |||||||||||||||||||||| ||||||||||| |||||| ||||||||| |
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| T |
22766478 |
ttgtttatttcagttaccaaatgcaatacagcttctgaagccttgaacttgttggaaagaaaggactgttttgatgtaatgttaattgatgctcatatgc |
22766379 |
T |
|
| Q |
228 |
caaacatggatgcttatgactttgtccaaagtgttgtcctacaactcaacattcctgtcattagtaagaatttattcaacttta |
311 |
Q |
| |
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||||||||||||| ||||| ||||| ||| || | | |||||||| |||||||| ||||||||| |||| |||||||||| |
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| T |
22766378 |
caaacatggatgcctatgattttgttcaacatgctaccggtcaactcaatattcctgttattagtaagtatttcttcaacttta |
22766295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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