View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6705_high_2 (Length: 401)
Name: NF6705_high_2
Description: NF6705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6705_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 9 - 380
Target Start/End: Original strand, 36917767 - 36918137
Alignment:
| Q |
9 |
ggtgttataaagagtgagatgaaattcatacttaaaatagtaaatgtgtgaattaattatgattgagtggctaaaataaaagatttagtgaaactaatta |
108 |
Q |
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| T |
36917767 |
ggtgttataaagagtgagatgaaattcttacttaaaatagtaaatgtgtgaattaattatgattgagtggctaaaataaa-gattttgtgaaactaatta |
36917865 |
T |
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| Q |
109 |
gcacatgtatattggtctagttctagggcacaacatgattgcaataaattaaagaatggggttagttttgttatgaaatgtcaacatctagttggggaca |
208 |
Q |
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| T |
36917866 |
gcacatgtatattggtctagttctagggcacaacatgattgcaataaattaaagaatggggttagttttgttatgaaatgtcaacatctagttggggaca |
36917965 |
T |
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| Q |
209 |
gttaaatgatgatgtgaagataataggctaattttgggtagttttgtacctaaagaaagtggaaactcagagagatgaacggccactcttatgaaaaata |
308 |
Q |
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| T |
36917966 |
gttaaatgatgatgtgaagataataggctaattttgggtagttttgtacctaaagaaagtggaaactcagagagatgaacggccactcttatgaaaaata |
36918065 |
T |
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| Q |
309 |
ctcagttttttaggacaagtggcctcaatcatgaccttactttcatttacttctgcctgttgtgttgtaact |
380 |
Q |
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| T |
36918066 |
ctcagttttttaggacaagtggcctcaatcatgaccttactttcatttacttctgcctgttgtgttgtaact |
36918137 |
T |
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