View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6705_low_1 (Length: 645)
Name: NF6705_low_1
Description: NF6705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6705_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 358 - 614
Target Start/End: Original strand, 24518092 - 24518348
Alignment:
| Q |
358 |
gttgtatgagttgaatgtgaattgtgtagggtttgaagcatgtgctagaaaggaatcagcttagagaatcacttgtggacgtggtagtttttagtaccat |
457 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
24518092 |
gttgtatgagttgaatgtaaattatgtagggtttgaagcatgtgctagaaaggaatcagcttagagaatcacttgtggacatggtagtttttagtaccat |
24518191 |
T |
|
| Q |
458 |
tttgcgggctcaaaatgttattgttttctctcattccttgattttagtaggtgaaattttctctatatgggagtttccattttttcttccaattgatttg |
557 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24518192 |
tttgcgggctcaaaatgttattgttttctctcattccttgattttagtaggtgaaattttctctatatgggagtttccattttttcttccaattgatttg |
24518291 |
T |
|
| Q |
558 |
tggaagaatcttggttcttgtgaggggattgtgtgggactattttaagtcttatatt |
614 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
24518292 |
tggaagaatcttggttcttgtgagaggattgtgtgggactaatttaagtcttatatt |
24518348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 23 - 284
Target Start/End: Original strand, 24517757 - 24518018
Alignment:
| Q |
23 |
atgcacaattacaactagatgtattttggccttgtatgatgcttgaatttaatttggatgtggtttgatgtaaatattagcaatgtgtgcaatcaggact |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
24517757 |
atgcacaattacaactagatgtattttggccttgtatgatgcttgaatttaatttggacgtgatttgatgtaaatattagcaatgtgtgcatctaggact |
24517856 |
T |
|
| Q |
123 |
ctattccattttaactgactttgaattttctgatgcatatgtaatcacaaagctaccatattctgcaagctaaggttctctccttatgcaattttttggt |
222 |
Q |
| |
|
||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
24517857 |
ctatttcattttaactgactttgaagtttctcatgcatatgtaatcacaaagctaccatattctgcaagctaaggttctctccttatggaattttttggt |
24517956 |
T |
|
| Q |
223 |
atattatgaaaattggttgactaacacttcctctgttacatgatcaaggtagatgatacaag |
284 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
24517957 |
atattatgaaaattggttgactaactcttcctctgttacatgatcaaggtagatgatacaag |
24518018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 438 - 575
Target Start/End: Original strand, 24507177 - 24507314
Alignment:
| Q |
438 |
gtggtagtttttagtaccattttgcgggctcaaaatgttattgttttctctcattccttgattttagtaggtgaaattttctctatatgggagtttcca- |
536 |
Q |
| |
|
||||||||||||| ||| |||||||| |||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
24507177 |
gtggtagtttttaatactattttgcgtgctcaaaatgttat-gttttctctcattccttgattttagttgatgaaattttctctatatgggagtttccat |
24507275 |
T |
|
| Q |
537 |
ttttttcttccaattgatttgtggaagaatcttggttct |
575 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
24507276 |
tttttttttccaattgatttgtggaagaatcttggttct |
24507314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 572 - 611
Target Start/End: Original strand, 24507421 - 24507460
Alignment:
| Q |
572 |
ttcttgtgaggggattgtgtgggactattttaagtcttat |
611 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
24507421 |
ttcttgtgaggggattgtgtaggactattttaactcttat |
24507460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 359 - 411
Target Start/End: Original strand, 24506448 - 24506500
Alignment:
| Q |
359 |
ttgtatgagttgaatgtgaattgtgtagggtttgaagcatgtgctagaaagga |
411 |
Q |
| |
|
|||| |||||||||||| ||||||| ||| ||||||||||| ||||| ||||| |
|
|
| T |
24506448 |
ttgtgtgagttgaatgtaaattgtgcaggttttgaagcatgcgctaggaagga |
24506500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 1e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 23 - 232
Target Start/End: Original strand, 35455883 - 35456091
Alignment:
| Q |
23 |
atgcacaattacaactagatgtattttggccttgtatgatgcttgaatttaatttggatgtggtttgatgtaaatattagcaatgtgtgcaatcaggact |
122 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||| || |||||||| | ||||| ||||||||||| ||||||||||||||| | ||||| |
|
|
| T |
35455883 |
atgcacaattacaact-gatgtattccggccttgtatgatgctcgagcttaatttgaacgtggtctgatgtaaatactagcaatgtgtgcaacctggact |
35455981 |
T |
|
| Q |
123 |
ctattccattttaactgactttgaattttctgatgcatatgtaatcacaaagctaccatattctgcaagctaaggttctctccttatgcaattttttggt |
222 |
Q |
| |
|
||||| |||||| ||| ||||||| ||| |||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||| |
|
|
| T |
35455982 |
ctattttattttagctgcctttgaagactctcatgcatctgtaatcacaaagctaccatattctgctagctaaggttatctccttatgcaagtttttggt |
35456081 |
T |
|
| Q |
223 |
atattatgaa |
232 |
Q |
| |
|
|| ||||||| |
|
|
| T |
35456082 |
atgttatgaa |
35456091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University