View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6705_low_10 (Length: 240)
Name: NF6705_low_10
Description: NF6705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6705_low_10 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 39185417 - 39185656
Alignment:
| Q |
1 |
caaaaacacaaaccacaggttctctctatcttggagtcacgtgaaaatgagaacaagagaatgctagggattatgtatgtggccttagaaattatacctt |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39185417 |
caaaaacacaaaacacaggttctctctatcttggagtcacgtgaaaatgagaacaagagaatgctagggattatgtatgtggccttagaaattatacctt |
39185516 |
T |
|
| Q |
101 |
ttggatggtaccatcgggggaggcgtgtgaatatatgtgatataaaagatatctatctattattattgttagggtcttgttaatgagtgcctccggactc |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
39185517 |
ttggatggtaccatcgggggaggcgtatgaatatgtgtgatataaaagatatctatctattattattgttagggtcttgttaacgagtgcctccggactc |
39185616 |
T |
|
| Q |
201 |
cggggcactctttaaggattctaagaaaataagttattct |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
39185617 |
cggggcactctttaaggattctaagaaaataaattattct |
39185656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 20 - 167
Target Start/End: Original strand, 39185884 - 39186032
Alignment:
| Q |
20 |
ttctctctatcttggagtcacgtgaaaatgagaacaagagaatgctagggattatgtatgtggccttagaaattataccttttggatggtacca-tcggg |
118 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||| || ||||| |
|
|
| T |
39185884 |
ttctcactatcttggagtcatgtgaaaatgagaacaagagaatgctagagattatgcatgtggccttagaaattatatattttggatggtatcattcggg |
39185983 |
T |
|
| Q |
119 |
ggaggcgtgtgaatatatgtgatataaaagatatctatctattattatt |
167 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
39185984 |
ggaggcgtgtaaatatatgtaatataaaagatatttatctattattatt |
39186032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 216
Target Start/End: Complemental strand, 7968541 - 7968495
Alignment:
| Q |
173 |
ggtcttgttaatgagtgcctccgg---actccggggcactctttaag |
216 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
7968541 |
ggtcttgttaaagagtgcctccggggcactccggggcactctttaag |
7968495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 27173340 - 27173279
Alignment:
| Q |
27 |
tatcttggagtcacgtgaaaatgagaacaagagaatgctagggattatgtatgtggccttagaaatt |
93 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
27173340 |
tatcttggagtcacgtgaaattgagaacaagagaatgc-----attatgattgtggccttagaaatt |
27173279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 38 - 136
Target Start/End: Complemental strand, 44436033 - 44435936
Alignment:
| Q |
38 |
cacgtgaaaatgagaacaagagaatgctagggattatgtatgtggccttagaaattataccttttggatggtaccatcgggggaggcgtgtgaatatat |
136 |
Q |
| |
|
|||| |||||| |||||||||||||| ||| ||||||| ||||||||| | ||||||| | ||||||| |||||| | ||||||| ||||||||||| |
|
|
| T |
44436033 |
cacgcgaaaataagaacaagagaatgttagagattatgcttgtggcctttggaattatatcgtttggattgtaccagc-agggaggcatgtgaatatat |
44435936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University