View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6705_low_4 (Length: 340)
Name: NF6705_low_4
Description: NF6705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6705_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 14 - 324
Target Start/End: Original strand, 17472112 - 17472419
Alignment:
| Q |
14 |
gaagtcaaaccctgtatcatcatctagtattgaagctagattgtctgagagacggttgagtggttgtgtgaatgtgatgatatcttttgaaggagtaatg |
113 |
Q |
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| T |
17472112 |
gaagtcaaaccctgtatca---tctagtattgaagctagattgtctgagagacggttgagtggttgtgtgaatgtgatgacatcttgtgaagcagtaatg |
17472208 |
T |
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| Q |
114 |
gttgaatttggtgctgttgtgcagcataactcactgctagtgttgttgctgatttcgtttgaatattcagagaattcacttctcaagtacatcattatac |
213 |
Q |
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| T |
17472209 |
gttgaatttggtgctgttgtgcagcataactcactgctagtattgttgctgatttcgtttgaatattcagagaatccacttctcaagtacatcattatac |
17472308 |
T |
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| Q |
214 |
tactatgagatatatgatgatgtgttgtaaaaagaagagtgagtgtatgtatgtattaagggaatgagcaagggtccttaattatatactcctactagat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
17472309 |
tactatgagatatatgatgatgtgttgtaaaaagaagagtgagtgtatgtatgtattaagggaatgagcaagggtctttaattatatactcctactagat |
17472408 |
T |
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| Q |
314 |
gagagagagtg |
324 |
Q |
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| T |
17472409 |
gagagagagtg |
17472419 |
T |
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