View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6705_low_6 (Length: 316)
Name: NF6705_low_6
Description: NF6705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6705_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 158 - 306
Target Start/End: Original strand, 2494879 - 2495030
Alignment:
| Q |
158 |
aaacgtttgagaacaccatttgaaaaaggtgagatttttggggttgttgaggttgtgaattttgttgtgggtgtttcagtttca---tgttgttctggtg |
254 |
Q |
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| T |
2494879 |
aaacgtttgagaacaccatttgaaaaaggtgagatttttggggttgttgaggttgtgaattttgttgtgggtgtttcagtttcatgttgttgttctggtg |
2494978 |
T |
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| Q |
255 |
atttagttaaggttgttgtagatgctgttaatatggttggtgctattgatgt |
306 |
Q |
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| T |
2494979 |
atttagttaaggttgttgtagatgctgttaatatggttggtgctattgatgt |
2495030 |
T |
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Target: chr7; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 2494731 - 2494818
Alignment:
| Q |
1 |
tggtgttgctgttggtgatgtcatgaattcaccacatccatctagggcatgaccacctaggtttgctgcatggtttttgagacattct |
88 |
Q |
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| T |
2494731 |
tggtgttgctgttggtgatgtcatgaattcaccacagccatctagggcatgaccacctaggtttgctgcatggtttttgagacattct |
2494818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 88
Target Start/End: Original strand, 3684004 - 3684081
Alignment:
| Q |
11 |
gttggtgatgtcatgaattcaccacatccatctagggcatgaccacctaggtttgctgcatggtttttgagacattct |
88 |
Q |
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| T |
3684004 |
gttggtgatggcatgaattcacaacaaccgtctagggcatgaccacctagggttgccacgtggtttttgagacattct |
3684081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 24181135 - 24181069
Alignment:
| Q |
22 |
catgaattcaccacatccatctagggcatgaccacctaggtttgctgcatggtttttgagacattct |
88 |
Q |
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| T |
24181135 |
catgaattcaccacatccatcaagtgcatgtccacctagggatgcagcatgatttttgagacattct |
24181069 |
T |
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