View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6705_low_7 (Length: 300)

Name: NF6705_low_7
Description: NF6705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6705_low_7
NF6705_low_7
[»] chr1 (9 HSPs)
chr1 (114-261)||(35989953-35990100)
chr1 (84-246)||(28639889-28640051)
chr1 (85-254)||(41932481-41932650)
chr1 (85-229)||(41933428-41933572)
chr1 (94-184)||(48892146-48892236)
chr1 (145-270)||(48182288-48182412)
chr1 (197-255)||(7134687-7134745)
chr1 (124-224)||(15499433-15499534)
chr1 (94-217)||(34549901-34550024)
[»] chr2 (3 HSPs)
chr2 (84-230)||(815617-815763)
chr2 (89-223)||(21649641-21649776)
chr2 (98-217)||(33945978-33946097)
[»] chr7 (7 HSPs)
chr7 (94-270)||(18500378-18500553)
chr7 (123-253)||(42012319-42012449)
chr7 (94-217)||(1906495-1906619)
chr7 (94-136)||(19646992-19647034)
chr7 (134-182)||(20171188-20171236)
chr7 (168-200)||(24450988-24451020)
chr7 (85-145)||(36279948-36280008)
[»] chr5 (9 HSPs)
chr5 (85-217)||(27690401-27690533)
chr5 (84-261)||(22417265-22417441)
chr5 (94-263)||(36520555-36520724)
chr5 (124-259)||(8840509-8840643)
chr5 (94-217)||(28443150-28443273)
chr5 (158-261)||(22407434-22407537)
chr5 (85-217)||(32285534-32285666)
chr5 (84-153)||(17476601-17476670)
chr5 (124-213)||(32695106-32695195)
[»] chr3 (3 HSPs)
chr3 (94-270)||(20860276-20860451)
chr3 (124-259)||(29582311-29582446)
chr3 (158-260)||(36337621-36337723)
[»] chr8 (3 HSPs)
chr8 (85-235)||(17865019-17865168)
chr8 (85-255)||(32124378-32124547)
chr8 (93-151)||(38621574-38621632)
[»] chr4 (4 HSPs)
chr4 (84-261)||(52598270-52598447)
chr4 (94-216)||(34953533-34953655)
chr4 (85-186)||(56084150-56084251)
chr4 (158-246)||(1655944-1656032)
[»] chr6 (3 HSPs)
chr6 (163-261)||(33555069-33555167)
chr6 (94-186)||(17519900-17519992)
chr6 (94-137)||(6837247-6837290)
[»] scaffold0185 (1 HSPs)
scaffold0185 (85-157)||(5086-5158)


Alignment Details
Target: chr1 (Bit Score: 96; Significance: 4e-47; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 114 - 261
Target Start/End: Complemental strand, 35990100 - 35989953
Alignment:
Q  114 tcctagaccataactacagtcaaaggaaacattttccatggtccaaccgaccataaatgcattaaacacaccataaattgtccaaaccatgggtgaaacg 213  Q
    ||||||||||||||||  ||||||| |||| |||||||||||||||||||||| ||||||||||||||||||| |||  ||||||||  |||||||||||    
T  35990100 tcctagaccataactattgtcaaagaaaacgttttccatggtccaaccgaccaaaaatgcattaaacacaccacaaaccgtccaaacattgggtgaaacg 35990001  T
Q  214 ccacaatccacctagtctgggaggtttcagattttacaatctgaaact 261  Q
    |||||||||||||||||||||| ||||| |||||||||||| ||||||    
T  35990000 ccacaatccacctagtctgggatgtttcggattttacaatccgaaact 35989953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 84 - 246
Target Start/End: Complemental strand, 28640051 - 28639889
Alignment:
Q  84 catgcaagattatttatagtcttaaactagtcctagaccataactacagtcaaaggaaacattttccatggtccaaccgaccataaatgcattaaacaca 183  Q
    ||||||||  ||||||||| ||||||  | |||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  28640051 catgcaaggctatttatagccttaaatcattcctagactataactacagtcaaaggaaacattttacatggtccaaccgaccaaaaatgcattaaacaca 28639952  T
Q  184 ccataaattgtccaaaccatgggtgaaacgccacaatccacctagtctgggaggtttcagatt 246  Q
    ||| |||   |||||||| | | |||||||||||||| |||||||| || |||||||||||||    
T  28639951 ccacaaaccatccaaaccttagatgaaacgccacaattcacctagtatgtgaggtttcagatt 28639889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 85 - 254
Target Start/End: Complemental strand, 41932650 - 41932481
Alignment:
Q  85 atgcaagattatttatagtcttaaactagtcctagaccataactacagtcaaaggaaacattttccatggtccaaccgaccataaatgcattaaacacac 184  Q
    |||||||  ||||||||||| ||||  ||||  |||||||||| ||| | |||||||||||||| |||||| |||| ||||| |||||||||||||||||    
T  41932650 atgcaagcctatttatagtcgtaaatcagtctcagaccataacaacatttaaaggaaacattttacatggttcaactgaccaaaaatgcattaaacacac 41932551  T
Q  185 cataaattgtccaaaccatgggtgaaacgccacaatccacctagtctgggaggtttcagattttacaatc 254  Q
    || |||  |||| |||| | ||||||||||||||||||||||||| || ||| |||| |||| |||||||    
T  41932550 cacaaaccgtcccaacctttggtgaaacgccacaatccacctagtttgagagttttcggattatacaatc 41932481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 85 - 229
Target Start/End: Complemental strand, 41933572 - 41933428
Alignment:
Q  85 atgcaagattatttatagtcttaaactagtcctagaccataactacagtcaaaggaaacattttccatggtccaaccgaccataaatgcattaaacacac 184  Q
    |||||||  ||||||||||| ||||  ||||| | |||||||| ||| | |||||||||||||| |||||| |||| ||||| ||||| |||||||||||    
T  41933572 atgcaagcctatttatagtcgtaaatcagtcccataccataacaacatttaaaggaaacattttacatggttcaacggaccaaaaatggattaaacacac 41933473  T
Q  185 cataaattgtccaaaccatgggtgaaacgccacaatccacctagt 229  Q
    || |||  ||||||||| | |||||||||||||||||||||||||    
T  41933472 cacaaaccgtccaaacctttggtgaaacgccacaatccacctagt 41933428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 184
Target Start/End: Original strand, 48892146 - 48892236
Alignment:
Q  94 tatttatagtcttaaactagtcctagaccataactacagtcaaaggaaacattttccatggtccaaccgaccataaatgcattaaacacac 184  Q
    ||||||||  ||||||| |||| |||| |||||||||||||||| || || |||||||||  ||||||| ||| |||||||||||||||||    
T  48892146 tatttataaccttaaacaagtcatagatcataactacagtcaaatgatacgttttccatgccccaaccgtccaaaaatgcattaaacacac 48892236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 270
Target Start/End: Complemental strand, 48182412 - 48182288
Alignment:
Q  145 ttttccatggtccaaccgaccataaatgcattaaacacaccataaattgtccaaaccatgggtgaaacgccacaatccacctagtctgggaggtttcaga 244  Q
    ||||| ||| |||||||||||| |||| |||||||||||||| |||  || |||||| ||||||||| | |||| |||||  |||| |||| |||||| |    
T  48182412 ttttcaatgctccaaccgaccaaaaatacattaaacacaccacaaacagt-caaaccttgggtgaaatgtcacagtccacacagtccgggatgtttcaaa 48182314  T
Q  245 ttttacaatctgaaactgtctgaata 270  Q
    ||  | ||||||||||||||| ||||    
T  48182313 ttacataatctgaaactgtctaaata 48182288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 255
Target Start/End: Original strand, 7134687 - 7134745
Alignment:
Q  197 aaaccatgggtgaaacgccacaatccacctagtctgggaggtttcagattttacaatct 255  Q
    ||||| |||||||||| ||||| | |||||| |||||||||||||||||| ||||||||    
T  7134687 aaaccttgggtgaaacaccacatttcacctaatctgggaggtttcagattctacaatct 7134745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 224
Target Start/End: Original strand, 15499433 - 15499534
Alignment:
Q  124 taactacagtcaaaggaaacattttccatggtccaaccgaccataaatg-cattaaacacaccataaattgtccaaaccatgggtgaaacgccacaatcc 222  Q
    |||||||| ||||||||||||||| ||||   | ||||||||| ||| | ||||||||||||||||||  |||||| |  | |||| |||||||||||||    
T  15499433 taactacaatcaaaggaaacatttaccatttccaaaccgaccaaaaacgacattaaacacaccataaaccgtccaagcatttggtgtaacgccacaatcc 15499532  T
Q  223 ac 224  Q
    ||    
T  15499533 ac 15499534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 217
Target Start/End: Original strand, 34549901 - 34550024
Alignment:
Q  94 tatttatagtcttaaactagtcctagaccataactacagtcaaaggaaacattttccatggtccaaccgaccataaatgcattaaacacaccataaattg 193  Q
    ||||||||| || |||| ||||||||| |||||||||| | |||  |||| |||||||   ||||||||  || |||| ||||||||||||||  ||  |    
T  34549901 tatttatagcctaaaacaagtcctagatcataactacaattaaataaaacgttttccaccatccaaccgttcaaaaattcattaaacacaccactaaccg 34550000  T
Q  194 tccaaaccatgggtgaaacgccac 217  Q
    |||||||| |  ||||||||||||    
T  34550001 tccaaacctttagtgaaacgccac 34550024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 84 - 230
Target Start/End: Original strand, 815617 - 815763
Alignment:
Q  84 catgcaagattatttatagtcttaaactagtcctagaccataactacagtcaaaggaaacattttccatggtccaaccgaccataaatgcattaaacaca 183  Q
    ||||||||  ||||||||||||||||| |||||||||||||||||||| ||||||||||| |||| ||||||||||||||||| ||||||||||||||||    
T  815617 catgcaagcctatttatagtcttaaacaagtcctagaccataactacattcaaaggaaacgtttttcatggtccaaccgaccaaaaatgcattaaacaca 815716  T
Q  184 ccataaattgtccaaaccatgggtgaaacgccacaatccacctagtc 230  Q
    ||| |||  ||| ||||| | ||||||||| || | |||||||||||    
T  815717 ccacaaaccgtctaaacctttggtgaaacgtcatattccacctagtc 815763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 223
Target Start/End: Complemental strand, 21649776 - 21649641
Alignment:
Q  89 aagattatttatagtcttaaactagtcctagaccataactacagtcaaaggaaacattttccatggtccaaccgaccataaatgcattaaacacaccata 188  Q
    |||| ||||||||| ||||||| |||||||||  |||||||||||||||  || | |||||||   |||||||  ||| |||| |||||||||||||| |    
T  21649776 aagactatttatagccttaaacaagtcctagattataactacagtcaaataaagcgttttccaccttccaaccatccaaaaattcattaaacacaccaca 21649677  T
Q  189 aattgtccaaa-ccatgggtgaaacgccacaatcca 223  Q
    ||  ||||||| |  ||| ||||||||||| |||||    
T  21649676 aaccgtccaaatctttggatgaaacgccaccatcca 21649641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 217
Target Start/End: Original strand, 33945978 - 33946097
Alignment:
Q  98 tatagtcttaaactagtcctagaccataactacagtcaaaggaaacattttccatggtccaaccgaccataaatgcattaaacacaccataaattgtcca 197  Q
    ||||| || |||| ||||||||| ||||||||||||||||  |||  |||||||| ||||||||| ||| |||| | |||||| ||||| |||| ||| |    
T  33945978 tatagcctaaaacaagtcctagatcataactacagtcaaataaaatgttttccattgtccaaccgtccaaaaattctttaaacgcaccacaaatcgtcta 33946077  T
Q  198 aaccatgggtgaaacgccac 217  Q
    |||  | |||||| ||||||    
T  33946078 aacatttggtgaatcgccac 33946097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 4e-38; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 94 - 270
Target Start/End: Original strand, 18500378 - 18500553
Alignment:
Q  94 tatttatagtcttaaactagtcctagaccataactacagtcaaaggaaacattttccatggtccaaccgaccataaatgcattaaacacaccataaattg 193  Q
    |||| |||||||||||| ||||||||| ||||||||| |||||| ||||| ||| ||||||||||||| |||| ||||||||||||||||||| |||| |    
T  18500378 tattaatagtcttaaaccagtcctagatcataactacggtcaaacgaaacgtttcccatggtccaacc-accaaaaatgcattaaacacaccacaaatcg 18500476  T
Q  194 tccaaaccatgggtgaaacgccacaatccacctagtctgggaggtttcagattttacaatctgaaactgtctgaata 270  Q
    |||||||| | ||||||||  |||  |||| |||||||| ||||||||||||| |||||| |||| |||||| ||||    
T  18500477 tccaaacctttggtgaaacatcaccgtccaactagtctgagaggtttcagattatacaatttgaacctgtctaaata 18500553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 123 - 253
Target Start/End: Original strand, 42012319 - 42012449
Alignment:
Q  123 ataactacagtcaaaggaaacattttccatggtccaaccgaccataaatgcattaaacacaccataaattgtccaaaccatgggtgaaacgccacaatcc 222  Q
    ||||||| ||||||||||||||||||| ||||||||||  |||| |||| |||||||||| |||||||   | |||||| |||||| |||||||||||||    
T  42012319 ataactatagtcaaaggaaacattttctatggtccaactaaccaaaaatacattaaacacgccataaacaattcaaaccttgggtgcaacgccacaatcc 42012418  T
Q  223 acctagtctgggaggtttcagattttacaat 253  Q
    ||||||| || ||| ||||||||| ||||||    
T  42012419 acctagtatgagagttttcagattatacaat 42012449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 94 - 217
Target Start/End: Complemental strand, 1906619 - 1906495
Alignment:
Q  94 tatttatagtcttaaactagtcctagaccataactacagtcaaaggaaac-attttccatggtccaaccgaccataaatgcattaaacacaccataaatt 192  Q
    |||||||||||||||||  |||||||| || ||||||||||||||||| |  ||||| ||||||||| || ||| |  |||||||||||| ||| |||      
T  1906619 tatttatagtcttaaacatgtcctagatcacaactacagtcaaaggaagcgtttttctatggtccaatcgtccaaagctgcattaaacactccacaaacc 1906520  T
Q  193 gtccaaaccatgggtgaaacgccac 217  Q
    ||||||||  | | |||||||||||    
T  1906519 gtccaaacttttgatgaaacgccac 1906495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 136
Target Start/End: Original strand, 19646992 - 19647034
Alignment:
Q  94 tatttatagtcttaaactagtcctagaccataactacagtcaa 136  Q
    ||||||||||||||||| ||||||||| ||||| |||||||||    
T  19646992 tatttatagtcttaaaccagtcctagatcataattacagtcaa 19647034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 182
Target Start/End: Original strand, 20171188 - 20171236
Alignment:
Q  134 caaaggaaacattttccatggtccaaccgaccataaatgcattaaacac 182  Q
    |||||||| | |||||||||||||||||| ||| |||||||| ||||||    
T  20171188 caaaggaagcgttttccatggtccaaccgcccaaaaatgcatcaaacac 20171236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 200
Target Start/End: Complemental strand, 24451020 - 24450988
Alignment:
Q  168 aaatgcattaaacacaccataaattgtccaaac 200  Q
    ||||||||||||||||||||||||| |||||||    
T  24451020 aaatgcattaaacacaccataaattttccaaac 24450988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 145
Target Start/End: Original strand, 36279948 - 36280008
Alignment:
Q  85 atgcaagattatttatagtcttaaactagtcctagaccataactacagtcaaaggaaacat 145  Q
    |||||||| ||||||||||| ||||    |||||||| |||||| ||||||||||||||||    
T  36279948 atgcaagactatttatagtcataaaacgttcctagactataactgcagtcaaaggaaacat 36280008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 5e-31; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 85 - 217
Target Start/End: Complemental strand, 27690533 - 27690401
Alignment:
Q  85 atgcaagattatttatagtcttaaactagtcctagaccataactacagtcaaaggaaacattttccatggtccaaccgaccataaatgcattaaacacac 184  Q
    |||||||  ||||||||| ||||||  |||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||      
T  27690533 atgcaagcatatttatagccttaaatcagtcctagaccataactacagtcaaaggaagcgttttccatggtccaaccgaccaaaaatgcattaaacactt 27690434  T
Q  185 cataaattgtccaaaccatgggtgaaacgccac 217  Q
    || |||  ||||||||| | | |||||||||||    
T  27690433 cacaaaccgtccaaacctttgatgaaacgccac 27690401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 84 - 261
Target Start/End: Complemental strand, 22417441 - 22417265
Alignment:
Q  84 catgcaagattatttatagtcttaaa-ctagtcctagaccataactacagtcaaaggaaacattttccatggtccaaccgaccataaatgcattaaacac 182  Q
    ||||||||| |||||||| || |||| ||| ||||||||  |||||||||||||||||||||||  | |||    ||||||||| |||| | ||||||||    
T  22417441 catgcaagactatttatattcgtaaatcta-tcctagactgtaactacagtcaaaggaaacattc-caatgcataaaccgaccaaaaatactttaaacac 22417344  T
Q  183 accataaattgtccaaaccatgggtgaaacgccacaatccacctagtctgggaggtttcagattttacaatctgaaact 261  Q
    |||| ||| ||| |||||| ||||||||||||||||||||||  |||||||||||||||||||| || ||| |||||||    
T  22417343 accacaaactgttcaaaccttgggtgaaacgccacaatccacacagtctgggaggtttcagattatataatttgaaact 22417265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 94 - 263
Target Start/End: Complemental strand, 36520724 - 36520555
Alignment:
Q  94 tatttatagtcttaaactagtcctagaccataactacagtcaaaggaaacattttccatggtccaaccgaccataaatgcattaaacacaccataaattg 193  Q
    ||||||||| ||||||| |||| ||||  ||||||||||| |||||||| |||||||||| ||  |||  ||| || | |||||||||||||| |||  |    
T  36520724 tatttatagccttaaaccagtcatagattataactacagtgaaaggaaatattttccatgctcggaccagccaaaattacattaaacacaccacaaaccg 36520625  T
Q  194 tccaaaccatgggtgaaacgccacaatccacctagtctgggaggtttcagattttacaatctgaaactgt 263  Q
     ||||||| || |||| || ||||| ||||| || |||||||||||||| ||||||||||| ||| ||||    
T  36520624 cccaaaccttgtgtgacacaccacactccacataatctgggaggtttcatattttacaatccgaatctgt 36520555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 124 - 259
Target Start/End: Original strand, 8840509 - 8840643
Alignment:
Q  124 taactacagtcaaaggaaacattttccatggtccaaccgaccataaatgcattaaacacaccataaattgtccaaaccatgggtgaaacgccacaatcca 223  Q
    |||||||| ||||||||||| ||||| ||| |||||| ||||| |||| |||||||||||||| |||   |||||||| |||||||||||||||  ||||    
T  8840509 taactacaatcaaaggaaactttttc-atgatccaactgaccaaaaatacattaaacacaccacaaaccatccaaaccttgggtgaaacgccacgttcca 8840607  T
Q  224 cctagtctgggaggtttcagattttacaatctgaaa 259  Q
    | ||| |||||||||||| |||| | ||||| ||||    
T  8840608 cttagcctgggaggtttcggattatgcaatccgaaa 8840643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 94 - 217
Target Start/End: Original strand, 28443150 - 28443273
Alignment:
Q  94 tatttatagtcttaaactagtcctagaccataactacagtcaaaggaaacattttccatggtccaaccgaccataaatgcattaaacacaccataaattg 193  Q
    ||||||||| |||||||   ||||||| |||||||||||||||| || || |||| ||||| ||||||  ||| ||||||||||||||||||| |||| |    
T  28443150 tatttatagccttaaacctttcctagatcataactacagtcaaatgatacgtttttcatggcccaaccatccaaaaatgcattaaacacaccacaaatcg 28443249  T
Q  194 tccaaaccatgggtgaaacgccac 217  Q
    |||||||  | ||| |||||||||    
T  28443250 tccaaacatttggttaaacgccac 28443273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 158 - 261
Target Start/End: Complemental strand, 22407537 - 22407434
Alignment:
Q  158 aaccgaccataaatgcattaaacacaccataaattgtccaaaccatgggtgaaacgccacaatccacctagtctgggaggtttcagattttacaatctga 257  Q
    ||||||||| |||| |||||||||||||| ||| |||| ||| | |||||||||||| ||| |||||  |||||||||||||| ||||| || ||| |||    
T  22407537 aaccgaccaaaaatacattaaacacaccacaaactgtctaaatcttgggtgaaacgcgacagtccacacagtctgggaggttttagattatataatttga 22407438  T
Q  258 aact 261  Q
    ||||    
T  22407437 aact 22407434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 217
Target Start/End: Original strand, 32285534 - 32285666
Alignment:
Q  85 atgcaagattatttatagtcttaaactagtcctagaccataactacagtcaaaggaaacattttccatggtccaaccgaccataaatgcattaaacacac 184  Q
    |||||||  ||||||||| |||||||   ||||||| |||||||||||||||||||| | ||||||| || |||||   ||  |||| ||||||||||||    
T  32285534 atgcaagtctatttatagccttaaacatatcctagatcataactacagtcaaaggaagcgttttccaaggcccaactatcccaaaatacattaaacacac 32285633  T
Q  185 cataaattgtccaaaccatgggtgaaacgccac 217  Q
    || |||  |||||||   | |||||||||||||    
T  32285634 cacaaaccgtccaaatttttggtgaaacgccac 32285666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 153
Target Start/End: Original strand, 17476601 - 17476670
Alignment:
Q  84 catgcaagattatttatagtcttaaactagtcctagaccataactacagtcaaaggaaacattttccatg 153  Q
    ||||||| ||||||||||| | ||||||  || |||||| |||||||| ||||||||||||||| |||||    
T  17476601 catgcaaaattatttatagccataaacttatcatagaccgtaactacaatcaaaggaaacatttaccatg 17476670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 213
Target Start/End: Original strand, 32695106 - 32695195
Alignment:
Q  124 taactacagtcaaaggaaacattttccatggtccaaccgaccataaatgcattaaacacaccataaattgtccaaaccatgggtgaaacg 213  Q
    |||||||| ||||||||| | |||| ||||| ||||||| ||| |||||||||||| |||||| |||  ||||||||  | |||||||||    
T  32695106 taactacaatcaaaggaagcgttttacatggcccaaccgtccaaaaatgcattaaatacaccacaaaccgtccaaacttttggtgaaacg 32695195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 94 - 270
Target Start/End: Complemental strand, 20860451 - 20860276
Alignment:
Q  94 tatttatagtcttaaactagtcctagaccataactacagtcaaaggaaacattttccatggtccaaccgaccataaatgcattaaacacaccataaattg 193  Q
    ||||||||| |||||||  ||||||| |  |||||||| | ||| |||||||||| |||| ||||||||| || |||| |||||||||| ||| ||| |     
T  20860451 tatttatagccttaaacctgtcctaggctctaactacaatgaaatgaaacatttttcatgctccaaccgatcaaaaatacattaaacac-ccacaaacta 20860353  T
Q  194 tccaaaccatgggtgaaacgccacaatccacctagtctgggaggtttcagattttacaatctgaaactgtctgaata 270  Q
    | |||||| ||||||||| |||||||||||| ||||||||||||||||||||| |||||| ||||||| ||| ||||    
T  20860352 ttcaaaccttgggtgaaatgccacaatccacgtagtctgggaggtttcagattatacaatatgaaactctctaaata 20860276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 124 - 259
Target Start/End: Original strand, 29582311 - 29582446
Alignment:
Q  124 taactacagtcaaaggaaacattttccatggtccaaccgaccataaatgcattaaacacaccataaattgtccaaaccatgggtgaaacgccacaatcca 223  Q
    |||||||||| ||||||||||||| | ||| |||||||||||  ||||||||||||||||||| ||||  |||||||| |||||||||||||||| | ||    
T  29582311 taactacagtaaaaggaaacatttacaatgttccaaccgaccgaaaatgcattaaacacaccacaaatcatccaaaccttgggtgaaacgccacacttca 29582410  T
Q  224 cctagtctgggaggtttcagattttacaatctgaaa 259  Q
    |  ||||| |||||||| ||||| || |||| ||||    
T  29582411 cacagtctaggaggttttagattatataatccgaaa 29582446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 260
Target Start/End: Original strand, 36337621 - 36337723
Alignment:
Q  158 aaccgaccataaatgcattaaacacaccataaattgtccaaaccatgggtgaaacgccacaatccacctagtctgggaggtttcagattttacaatctga 257  Q
    ||||||| | ||||||||||||||||||| |||  ||||||||  |||||| || | |||| ||||   ||||| |||||||||||||| || |||||||    
T  36337621 aaccgactaaaaatgcattaaacacaccacaaaccgtccaaactttgggtgtaatgtcacattccatgcagtctaggaggtttcagattatataatctga 36337720  T
Q  258 aac 260  Q
    |||    
T  36337721 aac 36337723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 85 - 235
Target Start/End: Complemental strand, 17865168 - 17865019
Alignment:
Q  85 atgcaagattatttatagtcttaaactagtcctagaccataactacagtcaaaggaaacattttccatggtccaaccgaccataaatgcattaaacacac 184  Q
    |||||||  |||||||||||||||||||||| ||||| ||||||||| ||||||||||| |||||||| || ||| | |||| ||||| ||||||||| |    
T  17865168 atgcaaggctatttatagtcttaaactagtcatagactataactacaatcaaaggaaacgttttccatagttcaa-caaccaaaaatgaattaaacacgc 17865070  T
Q  185 cataaattgtccaaaccatgggtgaaacgccacaatccacctagtctggga 235  Q
    || |||  || |||||| ||||||||| |||||| || |||||||||||||    
T  17865069 cacaaaccgttcaaaccttgggtgaaaagccacagtcaacctagtctggga 17865019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 85 - 255
Target Start/End: Complemental strand, 32124547 - 32124378
Alignment:
Q  85 atgcaagattatttatagtcttaaactagtcctagaccataactacagtcaaaggaaacattttccatggtccaaccgaccataaatgcattaaacacac 184  Q
    |||||||  |||||| |||||||||| |||| || | |||||||| ||||||| ||||  |||  ||||||||||||||||| |||||||||||| ||||    
T  32124547 atgcaagcctatttaaagtcttaaaccagtc-taaatcataactatagtcaaatgaaaggtttgtcatggtccaaccgaccaaaaatgcattaaagacac 32124449  T
Q  185 cataaattgtccaaaccatgggtgaaacgccacaatccacctagtctgggaggtttcagattttacaatct 255  Q
     | |||  ||||||| | ||||||||||| || | | ||| ||||||||||||||||||||| || |||||    
T  32124448 aaaaaaccgtccaaatcttgggtgaaacgtcatagtgcacatagtctgggaggtttcagattatataatct 32124378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 151
Target Start/End: Complemental strand, 38621632 - 38621574
Alignment:
Q  93 ttatttatagtcttaaactagtcctagaccataactacagtcaaaggaaacattttcca 151  Q
    |||||||||||||||||| ||||||||| |||||||||  |||||  ||||||||||||    
T  38621632 ttatttatagtcttaaacgagtcctagatcataactactatcaaataaaacattttcca 38621574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 84 - 261
Target Start/End: Original strand, 52598270 - 52598447
Alignment:
Q  84 catgcaagattatttatagtcttaaactagtcctagaccataactacagtcaaaggaaacattttccatggtccaaccgaccataaatgcattaaacaca 183  Q
    ||||||||| ||| ||||||| |||||   |||||||   |||||||||||||| ||||| ||| | | | |||||||||||| ||||  ||| ||||||    
T  52598270 catgcaagactatgtatagtcataaacctatcctagattgtaactacagtcaaaagaaacgtttacaaagctccaaccgaccaaaaatatattgaacaca 52598369  T
Q  184 ccataaattgtccaaaccatgggtgaaacgccacaatccacctagtctgggaggtttcagattttacaatctgaaact 261  Q
    |||  || ||||||||||   ||||||||||||||||||||  ||||||| ||||||| |||  || |||||||||||    
T  52598370 ccacgaactgtccaaacctctggtgaaacgccacaatccacacagtctggaaggtttccgatcatataatctgaaact 52598447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 216
Target Start/End: Complemental strand, 34953655 - 34953533
Alignment:
Q  94 tatttatagtcttaaactagtcctagaccataactacagtcaaaggaaacattttccatggtccaaccgaccataaatgcattaaacacaccataaattg 193  Q
    ||||||||| || |||  ||||||||| ||||||||||||||||  |||| | |||||   |||||||| ||| ||||||||||||||| |||  ||  |    
T  34953655 tatttatagcctaaaataagtcctagatcataactacagtcaaataaaacgtgttccacaatccaaccgtccaaaaatgcattaaacactccactaaccg 34953556  T
Q  194 tccaaaccatgggtgaaacgcca 216  Q
    |||||||||| ||||||||||||    
T  34953555 tccaaaccattggtgaaacgcca 34953533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 186
Target Start/End: Original strand, 56084150 - 56084251
Alignment:
Q  85 atgcaagattatttatagtcttaaactagtcctagaccataactacagtcaaaggaaacattttccatggtccaaccgaccataaatgcattaaacacac 184  Q
    |||||||  ||||||||| ||||||| ||||||||| |||||||||| ||||||   |  |||||||| | ||||| | ||| |||||||||||||||||    
T  56084150 atgcaagcatatttatagccttaaacaagtcctagatcataactacaatcaaagagtatgttttccatagcccaacagtccaaaaatgcattaaacacac 56084249  T
Q  185 ca 186  Q
    ||    
T  56084250 ca 56084251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 246
Target Start/End: Complemental strand, 1656032 - 1655944
Alignment:
Q  158 aaccgaccataaatgcattaaacacaccataaattgtccaaaccatgggtgaaacgccacaatccacctagtctgggaggtttcagatt 246  Q
    |||| ||||||||| |||||||||||||| |||| ||| ||||| ||  ||||| |||| | ||||  |||||| ||||||||| ||||    
T  1656032 aaccaaccataaattcattaaacacaccacaaatcgtctaaaccttgattgaaatgccagagtccatatagtcttggaggtttcggatt 1655944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 261
Target Start/End: Complemental strand, 33555167 - 33555069
Alignment:
Q  163 accataaatgcattaaacacaccataaattgtccaaaccatgggtgaaacgccacaatccacctagtctgggaggtttcagattttacaatctgaaact 261  Q
    |||| |||||||||||| |||||| |||  || |||||| ||||||  ||||||||||||||  ||||||||||||||| |||| || |||||||||||    
T  33555167 accaaaaatgcattaaatacaccacaaaccgttcaaaccttgggtgttacgccacaatccacacagtctgggaggtttcggattatataatctgaaact 33555069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 186
Target Start/End: Original strand, 17519900 - 17519992
Alignment:
Q  94 tatttatagtcttaaactagtcctagaccataactacagtcaaaggaaacattttccatggtccaaccgaccataaatgcattaaacacacca 186  Q
    ||||||||| || |||| |||| |||| ||||||||||||||||  ||| ||||| ||  ||||||||||||| |||| ||||||||||||||    
T  17519900 tatttatagcctaaaacaagtcatagatcataactacagtcaaataaaatatttttcaccgtccaaccgaccaaaaattcattaaacacacca 17519992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 137
Target Start/End: Complemental strand, 6837290 - 6837247
Alignment:
Q  94 tatttatagtcttaaactagtcctagaccataactacagtcaaa 137  Q
    ||||||||||||||||  ||||||||| ||||||||||||||||    
T  6837290 tatttatagtcttaaatcagtcctagatcataactacagtcaaa 6837247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 157
Target Start/End: Original strand, 5086 - 5158
Alignment:
Q  85 atgcaagattatttatagtcttaaactagtcctagaccataactacagtcaaaggaaacattttccatggtcc 157  Q
    |||||||  ||||||||  ||||||| |||| || |||||||||||| |||||||||||||||| ||| ||||    
T  5086 atgcaagcctatttataaccttaaacaagtcataaaccataactacaatcaaaggaaacatttttcatagtcc 5158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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