View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6705_low_8 (Length: 297)
Name: NF6705_low_8
Description: NF6705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6705_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 3e-94; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 20559660 - 20559372
Alignment:
| Q |
1 |
ttgccgttgtatgctattaacttgaaagaattatacctccattataaatccnnnnnnnnnnnnnnn-tattatgtatagaaataaccatgtacaattaaa |
99 |
Q |
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| T |
20559660 |
ttgccgttgtatgctattaacttgaaagaattatacctccattaaaaagccaaaaaaaaattaaaaatattatgtatagaaataaccatgtacaattaaa |
20559561 |
T |
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| Q |
100 |
tgcagaatacggccaaaggataaagtaaaatacaaaactaaagataaagaatactaaagaagtagctaatcaattttaaatgagacaactgaaataaatc |
199 |
Q |
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|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20559560 |
tgcacaatacggccaaaagataaagtaaaatacaaaactaaagataaagaatactaaagaagtagctaatcaattttaaatgagacaactgaaataaatc |
20559461 |
T |
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| Q |
200 |
acgttataagctaaataaattaatcaacatggcaaaacgcaaaagnnnnnnnactaaggaagatagatgataaaataggatgatgtccat |
289 |
Q |
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| T |
20559460 |
acgttataagctaaattaattaattaacatggcaaaacgcaaaag-ttttttactaagtaagatagatgataaaataggattatttccat |
20559372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 20571222 - 20570934
Alignment:
| Q |
1 |
ttgccgttgtatgctattaacttgaaagaattatacctccattataaatccnnnnnnnnnnnnnnn-tattatgtatagaaataaccatgtacaattaaa |
99 |
Q |
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| T |
20571222 |
ttgccgttgtatgctattaacttgaaagaattatacctccattaaaaagccaaaaaaaaattaaaaatattatgtatagaaataaccatgtacaattaaa |
20571123 |
T |
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| Q |
100 |
tgcagaatacggccaaaggataaagtaaaatacaaaactaaagataaagaatactaaagaagtagctaatcaattttaaatgagacaactgaaataaatc |
199 |
Q |
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| T |
20571122 |
tgcacaatacggccaaaagataaagtaaaatacaaaactaaagataaagaatactaaagaagtagctaatcaattttaaatgagacaactgaaataaatc |
20571023 |
T |
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| Q |
200 |
acgttataagctaaataaattaatcaacatggcaaaacgcaaaagnnnnnnnactaaggaagatagatgataaaataggatgatgtccat |
289 |
Q |
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| T |
20571022 |
acgttataagctaaattaattaattaacatggcaaaacgcaaaag-ttttttactaagtaagatagatgataaaataggattatttccat |
20570934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 20553157 - 20552870
Alignment:
| Q |
1 |
ttgccgttgtatgctattaacttgaaagaattatacctccattataaatccnnnnnnnnnnnnnnntattatgtatagaaataaccatgtacaattaaat |
100 |
Q |
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| T |
20553157 |
ttgccgttgtatgctattaacttgaaagaattatacctcaattataaagccaaaaaaaattaaaaatattatgtatagaaataaccatgtacaattaaat |
20553058 |
T |
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| Q |
101 |
gcagaatacggccaaaggataaagtaaaatacaaaactaaagataaagaatactaaagaagtagctaatcaattttaaatgagacaactgaaataaatca |
200 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
20553057 |
gcacaatacggccaaaggataaagtaaaatacaaaactaaagatagagaacactaaagaagtagctaatcaattttaaatgaaacaactgaaataaatca |
20552958 |
T |
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| Q |
201 |
cgttataagctaaataaattaatcaacatggcaaaacgcaaaagnnnnnnnactaaggaagatagatgataaaataggatgatgtccat |
289 |
Q |
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| T |
20552957 |
cgttataagctaaataaattaatcaacatggagaaacgcaaaag-ttttttactaagtaagatagatgataaaataggattatttccat |
20552870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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