View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6705_low_9 (Length: 258)
Name: NF6705_low_9
Description: NF6705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6705_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 252
Target Start/End: Original strand, 31284968 - 31285200
Alignment:
| Q |
20 |
agcttcaattaacttgggcaggacattgctcatataaaatcatagtaaaaccaccatcacatgccaaattcgtcaaagcatccgcataatagtttgtttc |
119 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||| ||||||||||||| |
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| T |
31284968 |
agctccaattaacttgagcaggacattgctcatataaaatcatagtaaaaccaccatcacatgctaaattcgccaaagcattcgcacaatagtttgtttc |
31285067 |
T |
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| Q |
120 |
tcaatatgaatgagaaattttaacctcccaatccaacttcaaaagtcttctaatattttgaactaaggtccacccagtgggtgacccaccttttgcgaaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
31285068 |
tcaatatgaatgagaaattttaacctcccaatccaactccaaaagtcttctaatattttgaactaaggtccacccggtgggtgacccaccttttgtgaaa |
31285167 |
T |
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| Q |
220 |
gaaatagtgttaaccactacttgagaatcaaca |
252 |
Q |
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||||||||||||||| |||||| |||||||||| |
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| T |
31285168 |
gaaatagtgttaacctctacttaagaatcaaca |
31285200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 29 - 252
Target Start/End: Complemental strand, 36618921 - 36618698
Alignment:
| Q |
29 |
taacttgggcaggacattgctcatataaaatcatagtaaaaccaccatcacatgccaaattcgtcaaagcatccgcataatagtttgtttctcaatatga |
128 |
Q |
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||||||| |||||||||| ||||||||||||||||||||||||| ||||||| ||||||||| ||||||| ||||| || |||||| ||||| |||||| |
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| T |
36618921 |
taacttgagcaggacattactcatataaaatcatagtaaaaccatcatcacaccccaaattcgccaaagcacccgcacaagagtttgcttctctatatga |
36618822 |
T |
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| Q |
129 |
atgagaaattttaacctcccaatccaacttcaaaagtcttctaatattttgaactaaggtccacccagtgggtgacccaccttttgcgaaagaaatagtg |
228 |
Q |
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| T |
36618821 |
atgacaaattttaacctctcaatccaactccaaaaatcttctaatattttgaatcaaggtccacctgatcggcaacccaccttttgcaaaagaaatagtg |
36618722 |
T |
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| Q |
229 |
ttaaccactacttgagaatcaaca |
252 |
Q |
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| T |
36618721 |
ttaaccactacttgagaatcaaca |
36618698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 26 - 252
Target Start/End: Complemental strand, 47218908 - 47218682
Alignment:
| Q |
26 |
aattaacttgggcaggacattgctcatataaaatcatagtaaaaccaccatcacatgccaaattcgtcaaagcatccgcataatagtttgtttctcaata |
125 |
Q |
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|||||||||| || ||||||||||||||||||||||||||||||||||||| ||| | |||||||| |||||||| ||| || ||| | ||| | || |
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| T |
47218908 |
aattaacttgagcgggacattgctcatataaaatcatagtaaaaccaccataacacgtcaaattcgctaaagcatctgcacaaaagtctacttcactcta |
47218809 |
T |
|
| Q |
126 |
tgaatgagaaattttaacctcccaatccaacttcaaaagtcttctaatattttgaactaaggtccacccagtgggtgacccaccttttgcgaaagaaata |
225 |
Q |
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||||||| ||||||||||||||||||||| || |||| ||||||||||||||||||| |||| | || | |||||||| ||||||| |||| |||| |
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| T |
47218808 |
tgaatgacaaattttaacctcccaatccacctccaaaggtcttctaatattttgaaccgaggttcgtccgatatgtgacccatcttttgcaaaagtaata |
47218709 |
T |
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| Q |
226 |
gtgttaaccactacttgagaatcaaca |
252 |
Q |
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|||||||||||||||| ||||||||| |
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| T |
47218708 |
gtgttaaccactactttggaatcaaca |
47218682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 26 - 252
Target Start/End: Complemental strand, 52644064 - 52643838
Alignment:
| Q |
26 |
aattaacttgggcaggacattgctcatataaaatcatagtaaaaccaccatcacatgccaaattcgtcaaagcatccgcataatagtttgtttctcaata |
125 |
Q |
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|
|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||| ||| |
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| T |
52644064 |
aattaacttgagcaggacattgctcatataaaatcgtagtaaaaccaccatcacatgccaaattcgccaaagcatccgcacaatagtttgcttctcgata |
52643965 |
T |
|
| Q |
126 |
tgaatgagaaattttaacctcccaatccaacttcaaaagtcttctaatattttgaactaaggtccacccagtgggtgacccaccttttgcgaaagaaata |
225 |
Q |
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||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
52643964 |
tgaatgagaaatttttacctcccaatccaactccaaaagtcttctaatattttgaactaaggtccacccggtggatgacccaccttttgcgaaagaaatt |
52643865 |
T |
|
| Q |
226 |
gtgttaaccactacttgagaatcaaca |
252 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
52643864 |
gtgttaaccactacttgagaatcaaca |
52643838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 49197763 - 49197712
Alignment:
| Q |
40 |
ggacattgctcatataaaatcatagtaaaaccaccatcacatgccaaattcg |
91 |
Q |
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|||||||||||||||||||||| || |||| ||| |||||||||||||||| |
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| T |
49197763 |
ggacattgctcatataaaatcaaagaaaaatcactttcacatgccaaattcg |
49197712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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