View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6707_high_10 (Length: 225)

Name: NF6707_high_10
Description: NF6707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6707_high_10
NF6707_high_10
[»] chr1 (17 HSPs)
chr1 (1-67)||(13496522-13496588)
chr1 (1-69)||(24455401-24455469)
chr1 (1-76)||(32049735-32049810)
chr1 (1-67)||(42435651-42435717)
chr1 (1-67)||(18410217-18410283)
chr1 (7-69)||(49004872-49004934)
chr1 (1-69)||(2023037-2023105)
chr1 (1-68)||(24775444-24775511)
chr1 (1-68)||(38984641-38984708)
chr1 (1-68)||(45536865-45536932)
chr1 (1-67)||(28645874-28645940)
chr1 (1-67)||(32524069-32524135)
chr1 (1-67)||(43643266-43643332)
chr1 (1-68)||(20274401-20274468)
chr1 (1-67)||(21332942-21333008)
chr1 (9-67)||(2840351-2840409)
chr1 (1-67)||(42829951-42830017)
[»] chr6 (7 HSPs)
chr6 (1-70)||(14175402-14175471)
chr6 (1-70)||(14179938-14180007)
chr6 (1-70)||(4271708-4271777)
chr6 (1-67)||(18903218-18903284)
chr6 (1-67)||(22510273-22510339)
chr6 (1-69)||(19420585-19420653)
chr6 (1-67)||(19420189-19420255)
[»] chr8 (13 HSPs)
chr8 (1-69)||(16428145-16428213)
chr8 (1-67)||(22513813-22513879)
chr8 (1-67)||(40557396-40557462)
chr8 (1-67)||(13279840-13279906)
chr8 (1-69)||(36896651-36896719)
chr8 (5-67)||(33441348-33441410)
chr8 (1-67)||(6416574-6416640)
chr8 (1-67)||(18385698-18385764)
chr8 (7-68)||(12501773-12501834)
chr8 (1-67)||(39622197-39622263)
chr8 (1-67)||(29089209-29089275)
chr8 (1-64)||(9220023-9220086)
chr8 (21-62)||(16888896-16888937)
[»] chr4 (11 HSPs)
chr4 (1-69)||(7509447-7509515)
chr4 (1-67)||(9768685-9768751)
chr4 (1-67)||(27071017-27071083)
chr4 (1-67)||(27151103-27151169)
chr4 (6-69)||(6243527-6243590)
chr4 (1-67)||(4943174-4943240)
chr4 (1-69)||(5943854-5943922)
chr4 (1-67)||(48425926-48425992)
chr4 (1-67)||(25887402-25887468)
chr4 (21-67)||(36353313-36353359)
chr4 (26-68)||(27024633-27024675)
[»] chr3 (18 HSPs)
chr3 (1-69)||(44516941-44517009)
chr3 (1-69)||(54610145-54610213)
chr3 (1-71)||(35350900-35350970)
chr3 (1-67)||(38190554-38190620)
chr3 (1-67)||(43844791-43844857)
chr3 (3-64)||(30106651-30106712)
chr3 (1-68)||(1003108-1003175)
chr3 (1-67)||(10122776-10122842)
chr3 (1-67)||(22397814-22397880)
chr3 (1-67)||(26706211-26706277)
chr3 (1-67)||(33957280-33957346)
chr3 (1-70)||(3345027-3345096)
chr3 (1-70)||(28418448-28418517)
chr3 (1-62)||(33955905-33955966)
chr3 (1-67)||(23302204-23302270)
chr3 (1-67)||(37964781-37964847)
chr3 (1-67)||(4066797-4066863)
chr3 (1-62)||(23302855-23302916)
[»] chr7 (11 HSPs)
chr7 (1-67)||(18784704-18784770)
chr7 (1-67)||(35113343-35113409)
chr7 (1-67)||(37316176-37316242)
chr7 (1-67)||(44045644-44045710)
chr7 (1-67)||(35504827-35504893)
chr7 (1-67)||(42046585-42046651)
chr7 (1-69)||(42049296-42049364)
chr7 (1-69)||(34643903-34643971)
chr7 (1-67)||(21954261-21954327)
chr7 (1-67)||(46804756-46804822)
chr7 (1-67)||(47400848-47400914)
[»] chr5 (14 HSPs)
chr5 (1-67)||(22721394-22721460)
chr5 (1-67)||(36789777-36789843)
chr5 (1-67)||(16475572-16475638)
chr5 (1-67)||(25336051-25336117)
chr5 (2-67)||(23107622-23107687)
chr5 (1-68)||(1212768-1212835)
chr5 (1-69)||(16478167-16478235)
chr5 (1-69)||(28969638-28969706)
chr5 (1-69)||(39565303-39565371)
chr5 (1-69)||(40830467-40830535)
chr5 (1-67)||(1598748-1598814)
chr5 (1-67)||(5812624-5812690)
chr5 (7-68)||(22387012-22387073)
chr5 (10-67)||(22497057-22497114)
[»] chr2 (9 HSPs)
chr2 (1-67)||(12256748-12256814)
chr2 (1-67)||(42843110-42843176)
chr2 (66-131)||(9476566-9476631)
chr2 (130-225)||(9477197-9477290)
chr2 (1-68)||(40263415-40263482)
chr2 (1-67)||(3555069-3555135)
chr2 (1-68)||(4651534-4651601)
chr2 (1-67)||(6904285-6904351)
chr2 (16-67)||(42224050-42224101)
[»] scaffold0088 (1 HSPs)
scaffold0088 (1-72)||(10638-10709)
[»] scaffold0009 (1 HSPs)
scaffold0009 (1-67)||(198994-199060)
[»] scaffold0368 (1 HSPs)
scaffold0368 (1-67)||(10007-10073)


Alignment Details
Target: chr1 (Bit Score: 67; Significance: 6e-30; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 13496588 - 13496522
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13496588 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 13496522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 24455401 - 24455469
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 69  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  24455401 acatccttagaggaaaggaatttgaaatagattatttctaagaactctaaattgttagtataaagatat 24455469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 32049810 - 32049735
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatatgttttta 76  Q
    |||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  32049810 acatccttagaggaaatgaatttaaaataggctatttctaagaactctaaattgttagtataaagatatgttttta 32049735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 42435717 - 42435651
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  42435717 acatccttagaggaaaggaatttgaattaggctatttctaagaactctaaattgttagtataaagat 42435651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 18410283 - 18410217
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    ||||| ||||||||||||| ||||||||||  ||||||||| |||||||||||||||||||||||||    
T  18410283 acatctttagaggaaaggattttgaaatagactatttctaaaaactctaaattgttagtataaagat 18410217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 49004934 - 49004872
Alignment:
Q  7 ttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 69  Q
    ||||||||||||| |||| |||||| ||||||||| |||||||||||||||||||||||||||    
T  49004934 ttagaggaaaggattttggaataggctatttctaaaaactctaaattgttagtataaagatat 49004872  T

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Target: chr1; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 2023105 - 2023037
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 69  Q
    ||||| |||||||| |||| |||| |||||| ||||||||| |||||||||||||||||||||||||||    
T  2023105 acatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagatat 2023037  T

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Target: chr1; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 24775511 - 24775444
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagata 68  Q
    ||||| |||||||| |||| |||| |||||| ||||||||| ||||||||||||||||||||||||||    
T  24775511 acatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagata 24775444  T

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Target: chr1; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 38984641 - 38984708
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagata 68  Q
    ||||| |||||||| |||| ||||||||||| | ||||||| ||||||||||||||||||||||||||    
T  38984641 acatctttagaggagaggattttgaaataggctgtttctaaaaactctaaattgttagtataaagata 38984708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 45536932 - 45536865
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagata 68  Q
    ||||| ||||||||||| | |||| |||||| ||||||||| ||||||||||||||||||||||||||    
T  45536932 acatctttagaggaaagaattttggaataggctatttctaaaaactctaaattgttagtataaagata 45536865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 28645874 - 28645940
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    ||||| |||||||| |||| |||| |||||| ||||||||| |||||||||||||||||||||||||    
T  28645874 acatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagat 28645940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 32524069 - 32524135
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    ||||| |||||||| |||| ||| ||||||| ||||||||| |||||||||||||||||||||||||    
T  32524069 acatctttagaggagaggattttaaaataggctatttctaaaaactctaaattgttagtataaagat 32524135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 43643266 - 43643332
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    ||||| |||||||| |||| |||| |||||| ||||||||| |||||||||||||||||||||||||    
T  43643266 acatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagat 43643332  T

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Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 20274468 - 20274401
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagata 68  Q
    ||||| |||||| |||||| |||| |||| | ||||||||| ||||||||||||||||||||||||||    
T  20274468 acatctttagagtaaaggattttggaataagctatttctaaaaactctaaattgttagtataaagata 20274401  T

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Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 21332942 - 21333008
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    ||||| |||||||| |||| |||| ||| || ||||||||| |||||||||||||||||||||||||    
T  21332942 acatctttagaggagaggattttggaatgggctatttctaaaaactctaaattgttagtataaagat 21333008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 2840409 - 2840351
Alignment:
Q  9 agaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    |||||| |||| |||| |||||| | ||||||| |||||||||||||||||||||||||    
T  2840409 agaggagaggattttggaataggctgtttctaaaaactctaaattgttagtataaagat 2840351  T

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Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 42829951 - 42830017
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    ||||| |||||||| || | |||  |||||| ||||||||| |||||||||||||||||||||||||    
T  42829951 acatctttagaggagagaattttagaataggctatttctaaaaactctaaattgttagtataaagat 42830017  T

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Target: chr6 (Bit Score: 66; Significance: 2e-29; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 14175471 - 14175402
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatatg 70  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14175471 acatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagatatg 14175402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 14180007 - 14179938
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatatg 70  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14180007 acatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagatatg 14179938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 4271708 - 4271777
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatatg 70  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  4271708 acatccttagaggaaaggaatttgaattaggctatttctaagaactctaaattgttagtataaagatatg 4271777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 18903218 - 18903284
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    ||||| |||||||| |||| ||||||||||| ||||||||| |||||||||||||||||||||||||    
T  18903218 acatctttagaggagaggattttgaaataggctatttctaaaaactctaaattgttagtataaagat 18903284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 22510339 - 22510273
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    ||||| |||||||| |||| |||| |||||| ||||||||| |||||||||||||||||||||||||    
T  22510339 acatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagat 22510273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 19420653 - 19420585
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 69  Q
    ||||| |||||||| |||| |||| |||| | ||||||||| ||||||||||| |||||||||||||||    
T  19420653 acatctttagaggagaggattttggaataagctatttctaaaaactctaaattattagtataaagatat 19420585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 19420189 - 19420255
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    ||||| |||||||| |||| |||| |||| | ||||||||| |||| ||||||||||||||||||||    
T  19420189 acatctttagaggagaggattttggaataagctatttctaaaaactttaaattgttagtataaagat 19420255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 16428213 - 16428145
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 69  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  16428213 acatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagatat 16428145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 22513879 - 22513813
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  22513879 acatccttagaggaaaggaatttgaattaggctatttctaagaactctaaattgttagtataaagat 22513813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 40557462 - 40557396
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  40557462 acatccttagaggaaaggaatttgaattaggctatttctaagaactctaaattgttagtataaagat 40557396  T

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Target: chr8; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 13279840 - 13279906
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    |||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  13279840 acatccttagagcaaaggaatttgaaataggctatttctaaaaactctaaattgttagtataaagat 13279906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 36896651 - 36896719
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 69  Q
    ||||||||||||||||||||||| ||||||  ||||||||| |||||||||||||||||||||||||||    
T  36896651 acatccttagaggaaaggaatttaaaatagactatttctaaaaactctaaattgttagtataaagatat 36896719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 33441410 - 33441348
Alignment:
Q  5 ccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    ||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  33441410 ccttagaggaaaggaatttgaaataagctatttctaaaaactctaaattgttagtataaagat 33441348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 6416640 - 6416574
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    ||||| |||||||| |||| ||||||||||| ||||||||| |||||||||||||||||||||||||    
T  6416640 acatctttagaggagaggattttgaaataggctatttctaaaaactctaaattgttagtataaagat 6416574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 18385698 - 18385764
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    ||||| |||||||| |||| ||||||||||| ||||||||| |||||||||||||||||||||||||    
T  18385698 acatctttagaggagaggattttgaaataggctatttctaaaaactctaaattgttagtataaagat 18385764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 12501773 - 12501834
Alignment:
Q  7 ttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagata 68  Q
    |||||||| |||| ||||||||||| ||||||||| |||||||||||||||| |||||||||    
T  12501773 ttagaggagaggattttgaaataggctatttctaaaaactctaaattgttagcataaagata 12501834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 39622197 - 39622263
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    ||||| |||||| | |||| |||| |||||| ||||||||| |||||||||||||||||||||||||    
T  39622197 acatctttagagaagaggattttggaataggctatttctaaaaactctaaattgttagtataaagat 39622263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 29089209 - 29089275
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    ||||| || ||||| |||| |||| ||||  |||||||||| |||||||||||||||||||||||||    
T  29089209 acatctttggaggagaggattttggaataaattatttctaaaaactctaaattgttagtataaagat 29089275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 9220086 - 9220023
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaa 64  Q
    ||||| |||||||| || | |||| |||||  ||||||||| ||||||||||||||||||||||    
T  9220086 acatctttagaggagagaattttggaatagactatttctaaaaactctaaattgttagtataaa 9220023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 16888896 - 16888937
Alignment:
Q  21 tttgaaataggttatttctaagaactctaaattgttagtata 62  Q
    ||||||||| | ||||||||| ||||||||||||||||||||    
T  16888896 tttgaaataagctatttctaaaaactctaaattgttagtata 16888937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 7509515 - 7509447
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 69  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7509515 acatccttaaaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 7509447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 9768685 - 9768751
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9768685 acatccttagaggaaaggaatttgaaatagattatttctaagaactctaaattgttagtataaagat 9768751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 27071083 - 27071017
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27071083 acatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 27071017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 27151169 - 27151103
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27151169 acatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 27151103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 6243527 - 6243590
Alignment:
Q  6 cttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 69  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6243527 cttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagatat 6243590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 4943240 - 4943174
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  4943240 acatccttagaggaaaggaatttgaattaggctatttctaagaactctaaattgttagtataaagat 4943174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 5943922 - 5943854
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 69  Q
    ||||| |||||||| |||| ||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  5943922 acatctttagaggagaggattttgaaataggctatttctaaaaactctaaattgttagtataaagatat 5943854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 48425992 - 48425926
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    ||||| |||||||| || | ||||||||||| ||||||||| ||||||||||||||| |||||||||    
T  48425992 acatctttagaggagagaattttgaaataggctatttctaaaaactctaaattgttaatataaagat 48425926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 25887468 - 25887402
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    ||||| |||||||| |||| |||| ||||   ||||||||| |||||||||||||||||||||||||    
T  25887468 acatctttagaggagaggattttggaataaactatttctaaaaactctaaattgttagtataaagat 25887402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 36353313 - 36353359
Alignment:
Q  21 tttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    ||||||||||| ||||| ||| |||||||||||||||||||||||||    
T  36353313 tttgaaataggctatttttaaaaactctaaattgttagtataaagat 36353359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 68
Target Start/End: Original strand, 27024633 - 27024675
Alignment:
Q  26 aataggttatttctaagaactctaaattgttagtataaagata 68  Q
    |||||| ||||||||| ||||||||||||||||||| ||||||    
T  27024633 aataggctatttctaaaaactctaaattgttagtatgaagata 27024675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 44516941 - 44517009
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 69  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  44516941 acatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagatat 44517009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 54610213 - 54610145
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 69  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  54610213 acatccttagaggaaaggaatttgaaataggctatttttaagaactctaaattgttagtataaagatat 54610145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 35350900 - 35350970
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatatgt 71  Q
    |||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  35350900 acatacttagagaaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagatatgt 35350970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 38190554 - 38190620
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  38190554 acatccttagaggaaaggaatttaaaataggctatttctaagaactctaaattgttagtataaagat 38190620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 43844857 - 43844791
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  43844857 acatccttagaggaaaggaatttgaaataggctatttgtaagaactctaaattgttagtataaagat 43844791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 30106712 - 30106651
Alignment:
Q  3 atccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaa 64  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30106712 atccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaa 30106651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 1003108 - 1003175
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagata 68  Q
    |||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1003108 acattcttagagaaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagata 1003175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 10122776 - 10122842
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    ||||| ||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  10122776 acatctttaaaggaaaggaatttaaaataggctatttctaagaactctaaattgttagtataaagat 10122842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 22397880 - 22397814
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    ||||| ||||||||||||| ||||||||| | ||||||||| |||||||||||||||||||||||||    
T  22397880 acatctttagaggaaaggattttgaaataagctatttctaaaaactctaaattgttagtataaagat 22397814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 26706211 - 26706277
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    |||| |||||||||||| ||||| ||||||  |||||||||||||||||||||||||||||||||||    
T  26706211 acattcttagaggaaagaaatttaaaatagactatttctaagaactctaaattgttagtataaagat 26706277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 33957280 - 33957346
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    ||||| |||||||| |||| ||||||||||| ||||||||| |||||||||||||||||||||||||    
T  33957280 acatctttagaggagaggattttgaaataggctatttctaaaaactctaaattgttagtataaagat 33957346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 3345027 - 3345096
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatatg 70  Q
    ||||| |||||| | |||| |||| |||||| ||||||||| |||| |||||||||||||||||||||||    
T  3345027 acatctttagagaagaggattttggaataggctatttctaaaaactttaaattgttagtataaagatatg 3345096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 28418448 - 28418517
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatatg 70  Q
    ||||| |||||||| || | |||| |||| | ||||||||| ||||||||||||||||||||||||||||    
T  28418448 acatctttagaggagagaattttggaatatgctatttctaaaaactctaaattgttagtataaagatatg 28418517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 33955905 - 33955966
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtata 62  Q
    ||||| |||||||| |||| |||| |||||| ||||||||| ||||||||||||||||||||    
T  33955905 acatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtata 33955966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 23302270 - 23302204
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    ||||| |||||||| |||| |||| |||| | ||||||||| |||| ||||||||||||||||||||    
T  23302270 acatctttagaggagaggattttggaataagctatttctaaaaactttaaattgttagtataaagat 23302204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 37964847 - 37964781
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    ||||| |||||||| || | |||| |||||| ||||||||| ||||||||||||||| |||||||||    
T  37964847 acatctttagaggagagaattttggaataggctatttctaaaaactctaaattgttaatataaagat 37964781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 4066797 - 4066863
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    ||||| |||||||| || | |||| |||||  ||||||||| ||||||||||||||| |||||||||    
T  4066797 acatctttagaggagagaattttggaatagactatttctaaaaactctaaattgttaatataaagat 4066863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 23302916 - 23302855
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtata 62  Q
    ||||| |||||||| |||| |||  |||| | ||||||||| ||||||||||||||||||||    
T  23302916 acatctttagaggagaggattttagaataagctatttctaaaaactctaaattgttagtata 23302855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 18784704 - 18784770
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  18784704 acatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 18784770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 35113409 - 35113343
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  35113409 acatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 35113343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 37316176 - 37316242
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37316176 acatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 37316242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 44045644 - 44045710
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  44045644 acatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 44045710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 35504893 - 35504827
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  35504893 acatccttagaggaaaggaatttgaaataggctattgctaagaactctaaattgttagtataaagat 35504827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 42046651 - 42046585
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  42046651 acatccttagaggaaaggaatttgaattaggctatttctaagaactctaaattgttagtataaagat 42046585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 42049364 - 42049296
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 69  Q
    ||||| |||||||| |||| ||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  42049364 acatctttagaggagaggattttgaaataggctatttctaaaaactctaaattgttagtataaagatat 42049296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 34643903 - 34643971
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 69  Q
    ||||| |||||||| |||| ||||||||||| ||||||||| |||||||||||||||||||||| ||||    
T  34643903 acatctttagaggagaggattttgaaataggctatttctaaaaactctaaattgttagtataaaaatat 34643971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 21954261 - 21954327
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    ||||| |||||||| |||| |||| |||||| ||||||||| |||||||||||||||||||||||||    
T  21954261 acatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagat 21954327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 46804822 - 46804756
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    ||||| |||||||| |||| |||| |||||| ||||||||| |||||||||||||||||||||||||    
T  46804822 acatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagat 46804756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 47400848 - 47400914
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    ||||| |||||||| |||| |||| ||||   ||||||||| |||||||||||||||||||||||||    
T  47400848 acatctttagaggagaggattttggaataaactatttctaaaaactctaaattgttagtataaagat 47400914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 22721394 - 22721460
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  22721394 acatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 22721460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 36789777 - 36789843
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  36789777 acatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 36789843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 16475638 - 16475572
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  16475638 acatccttagaggaaaggaatttgaattaggctatttctaagaactctaaattgttagtataaagat 16475572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 25336117 - 25336051
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  25336117 acatccttagaggaaaggaatttgaaatagactatttctaagaactctaaattgttagtataaagat 25336051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 23107622 - 23107687
Alignment:
Q  2 catccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  23107622 catccttagaggaaaggaatttgaactaggctatttctaagaactctaaattgttagtataaagat 23107687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 1212768 - 1212835
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagata 68  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||    
T  1212768 acatccttagaggaaaggaatttgaattaggctatttctaagaactctagattgttagtataaagata 1212835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 16478235 - 16478167
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 69  Q
    ||||| |||||||| |||| ||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  16478235 acatctttagaggagaggattttgaaataggctatttctaaaaactctaaattgttagtataaagatat 16478167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 28969638 - 28969706
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 69  Q
    ||||| |||||| ||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||    
T  28969638 acatctttagagaaaaggaatttgaattaggctatttctaaaaactctaaattgttagtataaagatat 28969706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 39565303 - 39565371
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 69  Q
    ||||| |||||||| |||| |||| |||||| ||||||||| |||||||||||||||||||||||||||    
T  39565303 acatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagatat 39565371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 40830535 - 40830467
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 69  Q
    ||||| |||||||| |||| |||| |||||| ||||||||| |||||||||||||||||||||||||||    
T  40830535 acatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagatat 40830467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 1598748 - 1598814
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    ||||| |||||||| |||| |||| |||||| ||||||||| |||||||||||||||||||||||||    
T  1598748 acatcattagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagat 1598814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 5812624 - 5812690
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    ||||| |||||||| |||| |||| |||||| ||||||||| |||||||||||||||||||||||||    
T  5812624 acatctttagaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagat 5812690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 22387012 - 22387073
Alignment:
Q  7 ttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagata 68  Q
    |||||||| |||| |||| |||| | ||||||||| ||||||||||||||||||||||||||    
T  22387012 ttagaggagaggattttggaataagctatttctaaaaactctaaattgttagtataaagata 22387073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 22497057 - 22497114
Alignment:
Q  10 gaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    ||||| |||| |||| |||||| ||||||||| |||||||||||||||||||||||||    
T  22497057 gaggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagat 22497114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 12256748 - 12256814
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  12256748 acatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 12256814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 42843110 - 42843176
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  42843110 acatccttagaggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 42843176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 66 - 131
Target Start/End: Original strand, 9476566 - 9476631
Alignment:
Q  66 atatgtttttagaagcaccaagtgcatgtttgcttgagcgtttagtatatctatatgtacgttttt 131  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9476566 atatgtttttagaagcaccaagtgcatgtttgcttgagcctttagtatatctatatgtacgttttt 9476631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 130 - 225
Target Start/End: Original strand, 9477197 - 9477290
Alignment:
Q  130 ttatggagcccaaatgattaatgaacttgatcaaatgacaaataattcaagagacgcttctaagttccattcttgaatgaaacaatttatttattt 225  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||   |||||| ||||||  ||||||||||||||||||||    
T  9477197 ttatggagctcaaatgattaatgaacttgatcaaatgacaaataattcaagagactct--caagttcaattcttagatgaaacaatttatttattt 9477290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 40263482 - 40263415
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagata 68  Q
    ||||| |||||||| |||| ||||||||||| ||||||||| ||||||||||||||| ||||||||||    
T  40263482 acatctttagaggagaggattttgaaataggctatttctaaaaactctaaattgttattataaagata 40263415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 3555069 - 3555135
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    ||||| |||||||| |||| ||||||||| | ||||||||| |||||||||||||||||||||||||    
T  3555069 acatctttagaggagaggattttgaaataagctatttctaaaaactctaaattgttagtataaagat 3555135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 4651534 - 4651601
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagata 68  Q
    ||||| |||||||| |||| ||||||||||  | ||||||| ||||||||||||||||||||||||||    
T  4651534 acatctttagaggagaggattttgaaatagactgtttctaaaaactctaaattgttagtataaagata 4651601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 6904351 - 6904285
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    ||||| |||||||| || | |||  |||||| ||||||||| |||||||||||||||||||||||||    
T  6904351 acatctttagaggagagaattttagaataggctatttctaaaaactctaaattgttagtataaagat 6904285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 42224101 - 42224050
Alignment:
Q  16 aggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    ||||||||| |||| | ||||||||| |||| ||||||||||||||||||||    
T  42224101 aggaatttggaataagctatttctaaaaactttaaattgttagtataaagat 42224050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 10709 - 10638
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatatgtt 72  Q
    ||||| ||| |||| |||| ||||||||||| ||||||||| ||||||||||||||||||||||||| ||||    
T  10709 acatctttaaaggagaggattttgaaataggctatttctaaaaactctaaattgttagtataaagatttgtt 10638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 198994 - 199060
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    ||||| |||||||| |||| ||| ||||||| ||||||||| |||||||||||||||||||||||||    
T  198994 acatctttagaggagaggatttttaaataggctatttctaaaaactctaaattgttagtataaagat 199060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0368 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 10007 - 10073
Alignment:
Q  1 acatccttagaggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 67  Q
    ||||| |||||||| || | |||  |||||| ||||||||| |||||||||||||||||||||||||    
T  10007 acatctttagaggagagaattttagaataggctatttctaaaaactctaaattgttagtataaagat 10073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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