View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6707_high_11 (Length: 204)

Name: NF6707_high_11
Description: NF6707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6707_high_11
NF6707_high_11
[»] chr3 (3 HSPs)
chr3 (1-166)||(6162342-6162507)
chr3 (1-157)||(52972739-52972894)
chr3 (1-153)||(54586192-54586343)
[»] chr7 (2 HSPs)
chr7 (1-157)||(19215319-19215472)
chr7 (1-157)||(41257652-41257808)
[»] chr5 (6 HSPs)
chr5 (1-157)||(25761026-25761181)
chr5 (1-155)||(23352284-23352437)
chr5 (1-202)||(38965388-38965589)
chr5 (1-157)||(13851010-13851166)
chr5 (1-146)||(20236468-20236612)
chr5 (83-204)||(27458558-27458677)
[»] chr1 (3 HSPs)
chr1 (1-157)||(44713392-44713547)
chr1 (1-157)||(50515120-50515275)
chr1 (1-157)||(45910704-45910850)
[»] chr2 (3 HSPs)
chr2 (1-157)||(38619033-38619188)
chr2 (1-157)||(17312821-17312973)
chr2 (7-147)||(9635229-9635368)
[»] chr8 (5 HSPs)
chr8 (1-204)||(23710826-23711029)
chr8 (1-157)||(9174011-9174166)
chr8 (1-157)||(9710549-9710700)
chr8 (1-145)||(753870-754016)
chr8 (1-63)||(14822422-14822484)
[»] chr6 (1 HSPs)
chr6 (1-146)||(18460062-18460206)


Alignment Details
Target: chr3 (Bit Score: 110; Significance: 1e-55; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 6162342 - 6162507
Alignment:
Q  1 tgatgatgttcaccccccttgatggccagattgctgctcgaaaccatgttttcgcccaaaatgcagtgttttctagaggtggagggagtgtttgtgataa 100  Q
    |||||||||| |||||||||||| ||||||||||||||| |||||||  |||||||| ||||| |||||||| |||||||| ||||||||||||||||||    
T  6162342 tgatgatgttaaccccccttgatagccagattgctgctccaaaccataatttcgccctaaatgaagtgttttttagaggtgtagggagtgtttgtgataa 6162441  T
Q  101 aggtggtctgcttcagctaggttctggagcagtatatataacctagccgtccggattccgtattct 166  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||  |||||||||| |||||||    
T  6162442 aggtggtctgcttcagctaggttctggagaactatatataacctagttgtccggattctgtattct 6162507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 52972739 - 52972894
Alignment:
Q  1 tgatgatgttcaccccccttgatggccagattgctgctcgaaaccatgttttcgcccaaaatgcagtgttttctagaggtggagggagtgtttgtgataa 100  Q
    |||||||||| |||||||||||||||||||||||| ||  ||||||||||||| ||| |||||  ||||||| | |||||| ||||||||||||||||||    
T  52972739 tgatgatgttaaccccccttgatggccagattgctacttcaaaccatgttttctccctaaatggtgtgtttt-tggaggtgtagggagtgtttgtgataa 52972837  T
Q  101 aggtggtctgcttcagctaggttctggagcagtatatataacctagccgtccggatt 157  Q
    ||||||||||||||||||||| | ||||| | |||||||||||| || |||||||||    
T  52972838 aggtggtctgcttcagctagggtatggagaactatatataacctcgctgtccggatt 52972894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 54586343 - 54586192
Alignment:
Q  1 tgatgatgttcaccccccttgatggccagattgctgctcgaaaccatgttttcgcccaaaatgcagtgttttctagaggtggagggagtgtttgtgataa 100  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||| |||| ||||||| ||  || |||| |||||||| ||||||||||| ||||||    
T  54586343 tgatgatgttaaccccccttgatggccagattgctgctccaaaccatatttttgcccaaa-tggtgtattttttagaggtgtagggagtgtttatgataa 54586245  T
Q  101 aggtggtctgcttcagctaggttctggagcagtatatataacctagccgtccg 153  Q
    |||  || ||||| ||||||||||||||| ||||||||||||||||| |||||    
T  54586244 aggcagtgtgctttagctaggttctggaggagtatatataacctagcagtccg 54586192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 7e-51; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 19215472 - 19215319
Alignment:
Q  1 tgatgatgttcaccccccttgatggccagattgctgctcgaaaccatgttttcgcccaaaatgcagtgttttctagaggtggagggagtgtttgtgataa 100  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||  ||||||| | |||||| ||||||||||||||||||    
T  19215472 tgatgatgttaaccccccttgatggccagattgctgctccaaaccatgttttcgccctaaatg--gtgtttt-tggaggtgtagggagtgtttgtgataa 19215376  T
Q  101 aggtggtctgcttcagctaggttctggagcagtatatataacctagccgtccggatt 157  Q
    |||||||||||||||| |||||||||||| | ||||||||||||||| |||||||||    
T  19215375 aggtggtctgcttcagttaggttctggagaactatatataacctagctgtccggatt 19215319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 41257652 - 41257808
Alignment:
Q  1 tgatgatgttcacccccc-ttgatggccagattgctgctcgaaaccatgttttcgcccaaaatgcagtgt-tttctagaggtggagggagtgtttgtgat 98  Q
    |||||||||| ||||||| |||||||||| |||||||||| ||||||| ||||||||| |||  |||||| ||| | ||||||  |||||||||||||||    
T  41257652 tgatgatgttaacccccccttgatggccatattgctgctccaaaccatattttcgccctaaa--cagtgtgtttttggaggtgttgggagtgtttgtgat 41257749  T
Q  99 aaaggtggtctgcttcagctaggttctggagcagtatatataacctagccgtccggatt 157  Q
    ||||||||| ||||||||||||||||||||| | || ||||||||||||  ||||||||    
T  41257750 aaaggtggtgtgcttcagctaggttctggagaactacatataacctagctatccggatt 41257808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 97; Significance: 7e-48; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 25761181 - 25761026
Alignment:
Q  1 tgatgatgttcaccccccttgatggccagattgctgctcgaaaccatgttttcgcccaaaatgcagtgttttctagaggtggagggagtgtttgtgataa 100  Q
    |||||||||| ||||||||||||||  |||||||||||| ||||||||||||||||| |||||  ||||||| | ||||||  |||||||||||||||||    
T  25761181 tgatgatgttaaccccccttgatgggaagattgctgctccaaaccatgttttcgccctaaatggtgtgtttt-tggaggtgttgggagtgtttgtgataa 25761083  T
Q  101 aggtggtctgcttcagctaggttctggagcagtatatataacctagccgtccggatt 157  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||    
T  25761082 aggtggtctgcttcagctaggttctggagaactatatataacctagctgtccggatt 25761026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 23352284 - 23352437
Alignment:
Q  1 tgatgatgttcaccccccttgatggccagattgctgctcgaaaccatgttttcgcccaaaatgcagtgttttctagaggtggagggagtgtttgtgataa 100  Q
    |||||||||| ||| |||||||||||||||||||||||| || |||||||||||||| || ||  ||||||| | |||||| ||||||||||||||||||    
T  23352284 tgatgatgttaaccgcccttgatggccagattgctgctccaacccatgttttcgccctaattggtgtgtttt-tggaggtgtagggagtgtttgtgataa 23352382  T
Q  101 aggtggtctgcttcagctaggttctggagcagtatatataacctagccgtccgga 155  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||| |||||||    
T  23352383 aggtggtctgcttcagctaggttctggagaactatatataacctagctgtccgga 23352437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 38965589 - 38965388
Alignment:
Q  1 tgatgatgttcaccccccttgatggccagattgctgctcgaaaccatgttttcgcccaaaatgcagtgttttctagaggtggagggagtgtttgtgataa 100  Q
    |||||||||| | |||||||||||||||||||| ||||| ||||||| |||||| || |||||  ||||||| |||||||| ||||||||||||||||||    
T  38965589 tgatgatgttaatcccccttgatggccagattgttgctccaaaccatattttcgtcctaaatggtgtgttttttagaggtgtagggagtgtttgtgataa 38965490  T
Q  101 aggtggtctgcttcagctaggttctggagcagtatatataacctagccgtccggattccgtattctggnnnnnnncgactatttttcccgctcacttcaa 200  Q
    ||| ||||  ||| ||||||||||||||| ||||||||||||| || | |||||||| ||| ||| ||       |||||||||||||||||||||||||    
T  38965489 aggcggtcctctttagctaggttctggagaagtatatataacccagtcttccggatttcgttttccggataaaaacgactatttttcccgctcacttcaa 38965390  T
Q  201 at 202  Q
    ||    
T  38965389 at 38965388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 13851010 - 13851166
Alignment:
Q  1 tgatgatgttcac-cccccttgatggccagattgctgctcgaaaccatgttttcgcccaaaatgcagtgttttctagaggtggagggagtgtttgtgata 99  Q
    |||||||||| || |||||||||||||||||||||||||| ||||||||||||||||| |||||  ||||||| | ||||||  ||| |||||| |||||    
T  13851010 tgatgatgttaacacccccttgatggccagattgctgctccaaaccatgttttcgccctaaatggtgtgtttt-tggaggtgttgggggtgtttatgata 13851108  T
Q  100 aaggtggtctgcttcagctaggttctggagcagtatatataacctagccgtccggatt 157  Q
    |||||||| ||||||||||||||||||||| | ||||||||||||||| |||||||||    
T  13851109 aaggtggtatgcttcagctaggttctggagaactatatataacctagctgtccggatt 13851166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 20236468 - 20236612
Alignment:
Q  1 tgatgatgttcaccccccttgatggccagattgctgctcgaaaccatgttttcgcccaaaatgcagtgttttctagaggtggagggagtgtttgtgataa 100  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||| |||||  ||||||| | |||||| ||||||||||||||||||    
T  20236468 tgatgatgttaaccccccttgatggccagattgctgctccaaaccatgttttctccctaaatggtgtgtttt-tggaggtgtagggagtgtttgtgataa 20236566  T
Q  101 aggtggtctgcttcagctaggttctggagcagtatatataacctag 146  Q
    ||||| ||| ||||||||||||| ||||| | ||||||||||||||    
T  20236567 aggtgatcttcttcagctaggttttggagaactatatataacctag 20236612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 83 - 204
Target Start/End: Complemental strand, 27458677 - 27458558
Alignment:
Q  83 agggagtgtttgtgataaaggtggtctgcttcagctaggttctggagcagtatatataacctagccgtccggattccgtattctggnnnnnnncgactat 182  Q
    ||||||||||||||||||| ||||| ||||||||||||||||| |||  |||||||||||||||| |||| |||| | | ||||||       | |||||    
T  27458677 agggagtgtttgtgataaatgtggtgtgcttcagctaggttctagag--gtatatataacctagcagtccagatttcattttctggaaaaaaactactat 27458580  T
Q  183 ttttcccgctcacttcaaatac 204  Q
    |||||||||||| |||||||||    
T  27458579 ttttcccgctcatttcaaatac 27458558  T

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Target: chr1 (Bit Score: 97; Significance: 7e-48; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 44713392 - 44713547
Alignment:
Q  1 tgatgatgttcaccccccttgatggccagattgctgctcgaaaccatgttttcgcccaaaatgcagtgttttctagaggtggagggagtgtttgtgataa 100  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||| |||||  ||||||| | ||||||  |||||||||||||||||    
T  44713392 tgatgatgttaaccccccttgatggccagattgctgctccaaaccatattttcgccctaaatggtgtgtttt-tggaggtgttgggagtgtttgtgataa 44713490  T
Q  101 aggtggtctgcttcagctaggttctggagcagtatatataacctagccgtccggatt 157  Q
    ||||||||||||||||||||||||| ||| | ||||||||||||||| |||||||||    
T  44713491 aggtggtctgcttcagctaggttctagagaactatatataacctagctgtccggatt 44713547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 50515275 - 50515120
Alignment:
Q  1 tgatgatgttcaccccccttgatggccagattgctgctcgaaaccatgttttcgcccaaaatgcagtgttttctagaggtggagggagtgtttgtgataa 100  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||  ||||||| | ||| ||  |||||||||||||||||    
T  50515275 tgatgatgttaaccccccttgatggccagattgctgctccaaaccatgttttcgccctaaatggtgtgtttt-tggagatgttgggagtgtttgtgataa 50515177  T
Q  101 aggtggtctgcttcagctaggttctggagcagtatatataacctagccgtccggatt 157  Q
    ||||||||||||| ||||||||||||||| | ||||||||||| ||  |||||||||    
T  50515176 aggtggtctgctttagctaggttctggagaactatatataacccagttgtccggatt 50515120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 45910704 - 45910850
Alignment:
Q  1 tgatgatgttcaccccccttgatggccagattgctgctcgaaaccatgttttcgcccaaaatgcagtgttttctagaggtggagggagtgtttgtgataa 100  Q
    |||||||| | |||||||||||||| ||||||| ||||| ||||||||||||||||| |||||  |||||||       ||||||   ||||||||||||    
T  45910704 tgatgatgctaaccccccttgatggtcagattgttgctccaaaccatgttttcgccctaaatggtgtgtttt-------tggagg---tgtttgtgataa 45910793  T
Q  101 aggtggtctgcttcagctaggttctggagcagtatatataacctagccgtccggatt 157  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||| || ||||||    
T  45910794 aggtggtctgcttcagctaggttctggagaactatatataacctagctgttcggatt 45910850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 38619188 - 38619033
Alignment:
Q  1 tgatgatgttcaccccccttgatggccagattgctgctcgaaaccatgttttcgcccaaaatgcagtgttttctagaggtggagggagtgtttgtgataa 100  Q
    |||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||| |||||  ||||||| | || |||  |||||||||||||||||    
T  38619188 tgatgatgttaaccccccttgatggacagattgctgctccaaaccatgttttcgccctaaatggtgtgtttt-tggaagtgttgggagtgtttgtgataa 38619090  T
Q  101 aggtggtctgcttcagctaggttctggagcagtatatataacctagccgtccggatt 157  Q
    ||||||||||||||||||||||||| ||| | ||||||||||||||| |||||||||    
T  38619089 aggtggtctgcttcagctaggttcttgagaactatatataacctagctgtccggatt 38619033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 17312821 - 17312973
Alignment:
Q  1 tgatgatgttcaccccccttgatggccagattgctgctcgaaaccatgttttcgcccaaaatgcagtgttttctagaggtggagggagtgtttgtgataa 100  Q
    |||||||||| |||||| |||||||||||||||||| || ||||||||||||||||| |||||  ||||||| | |||||| || |||||||||||||||    
T  17312821 tgatgatgttaaccccctttgatggccagattgctgttccaaaccatgttttcgccctaaatggtgtgtttt-tggaggtgtagtgagtgtttgtgataa 17312919  T
Q  101 aggtggtctgcttcagctaggttctggagcagtatatataacctagccgtccggatt 157  Q
    |||||||||||||||||||||||   ||| | ||||||||||||||| |||||||||    
T  17312920 aggtggtctgcttcagctaggtt---gagaactatatataacctagctgtccggatt 17312973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 7 - 147
Target Start/End: Complemental strand, 9635368 - 9635229
Alignment:
Q  7 tgttcaccccccttgatggccagattgctgctcgaaaccatgttttcgcccaaaatgcagtgttttctagaggtggagggagtgtttgtgataaaggtgg 106  Q
    |||| ||| |||||||||||||||||||||||| ||| ||| |||||||||||| ||  |||||| |||  |||| ||||||||||||||||||||||||    
T  9635368 tgttaacctcccttgatggccagattgctgctccaaatcatattttcgcccaaattggtgtgttt-ctaagggtgtagggagtgtttgtgataaaggtgg 9635270  T
Q  107 tctgcttcagctaggttctggagcagtatatataacctagc 147  Q
    |  |||||||||||||||| | | |||||||||||||||||    
T  9635269 tgagcttcagctaggttcttgggaagtatatataacctagc 9635229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 23710826 - 23711029
Alignment:
Q  1 tgatgatgttcaccccccttgatggccagattgctgctcgaaaccatgttttcgcccaaaatgcagtgttttctagaggtggagggagtgtttgtgataa 100  Q
    |||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||   || |||| |||||||| || |||||||||||||||    
T  23710826 tgatgatgttaaccccccttgatagccagattgctgctccaaaccatgttttcgcccaaaatagtgttttttttagaggtgtagtgagtgtttgtgataa 23710925  T
Q  101 aggtggtctgcttcagctaggttctggagcagtatatataacctagccgtccggattccgtattctggnnnnnnncgactatttttcccgctcacttcaa 200  Q
    ||| | | ||||||||||||||| ||||| | ||||||||||||||| ||||||||| | | ||||||       |||||| |||||| ||||| |||||    
T  23710926 aggggttgtgcttcagctaggttatggagaactatatataacctagctgtccggattacattttctggaaaaaaacgactacttttcctgctcagttcaa 23711025  T
Q  201 atac 204  Q
    ||||    
T  23711026 atac 23711029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 9174011 - 9174166
Alignment:
Q  1 tgatgatgttcaccccccttgatggccagattgctgctcgaaaccatgttttcgcccaaaatgcagtgttttctagaggtggagggagtgtttgtgataa 100  Q
    |||||||||| |||||| ||||||||||||||||| ||| ||||||||||||||||| |||||  ||||||| | |||||| ||||||||||||||||||    
T  9174011 tgatgatgttaaccccctttgatggccagattgctactccaaaccatgttttcgccctaaatggtgtgtttt-tggaggtgtagggagtgtttgtgataa 9174109  T
Q  101 aggtggtctgcttcagctaggttctggagcagtatatataacctagccgtccggatt 157  Q
    ||||||||| ||||||||||||||||||  | |||||||||||| || |||| ||||    
T  9174110 aggtggtctacttcagctaggttctggaaaactatatataacctcgctgtccagatt 9174166  T

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Target: chr8; HSP #3
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 9710549 - 9710700
Alignment:
Q  1 tgatgatgttcaccccccttgatggccagattgctgctcgaaaccatgttttcgcccaaaatgcagtgttttctagaggtggagggagtgtttgtgataa 100  Q
    |||||||||| ||||||||||||||    || ||||||| ||||||||||||||||| |||||  ||||||| | ||||||  |||||||||||||||||    
T  9710549 tgatgatgttaaccccccttgatgg----atagctgctccaaaccatgttttcgccctaaatggtgtgtttt-tggaggtgttgggagtgtttgtgataa 9710643  T
Q  101 aggtggtctgcttcagctaggttctggagcagtatatataacctagccgtccggatt 157  Q
    ||||||| ||||||||||||||||||||| | ||||||||||||||  |||||||||    
T  9710644 aggtggtttgcttcagctaggttctggagaactatatataacctagttgtccggatt 9710700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 754016 - 753870
Alignment:
Q  1 tgatgatgttcaccccccttgatggccagattgctgctcgaaaccatgttttcgcccaaaatgcagtgttttctagaggtggagggagtgtttgtgataa 100  Q
    |||||||||  ||||||||||||||||| |||||||||| ||||||||||| ||||| |||||  ||||||| | |||||| ||||||||||||||||||    
T  754016 tgatgatgtcaaccccccttgatggccatattgctgctccaaaccatgtttccgccctaaatggtgtgtttt-tggaggtgtagggagtgtttgtgataa 753918  T
Q  101 aggtgg---tctgcttcagctaggttctggagcagtatatataaccta 145  Q
    ||| ||   | ||||||||||||||||||||  | |||||||||||||    
T  753917 agggggggttgtgcttcagctaggttctggaaaactatatataaccta 753870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 14822484 - 14822422
Alignment:
Q  1 tgatgatgttcaccccccttgatggccagattgctgctcgaaaccatgttttcgcccaaaatg 63  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||| |||||    
T  14822484 tgatgatgttaaccccccttgatggccagattgctgctccaaaccatattttcgccctaaatg 14822422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 18460062 - 18460206
Alignment:
Q  1 tgatgatgttcaccccccttgatggccagattgctgctcgaaaccatgttttcgcccaaaatgcagtgttttctagaggtggagggagtgtttgtgataa 100  Q
    |||||||||| ||| ||||||||||| |||||| ||||| |||||||||||||||||  ||||  ||||||| | |||||  ||||||||||||||||||    
T  18460062 tgatgatgttaacctcccttgatggctagattgttgctccaaaccatgttttcgcccttaatggtgtgtttt-tggaggtatagggagtgtttgtgataa 18460160  T
Q  101 aggtggtctgcttcagctaggttctggagcagtatatataacctag 146  Q
    |||||||||||||||||||| ||||| || | ||||||||||||||    
T  18460161 aggtggtctgcttcagctagattctgcagaactatatataacctag 18460206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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