View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6707_high_2 (Length: 499)
Name: NF6707_high_2
Description: NF6707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6707_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 14 - 484
Target Start/End: Original strand, 10518612 - 10519082
Alignment:
| Q |
14 |
acatctatttatctgcccaggttcgaagacttagcttccaatcgacatttaatatagcgagcgatatgtcaatatcagcaatgttaaaaaattaaaacca |
113 |
Q |
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| T |
10518612 |
acatctatttatctgcccaggttcgaagacttagcttccaatcgacatttaatatagcgagcgatatgttaatatcagcaatgttaaaaaattaaaacca |
10518711 |
T |
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| Q |
114 |
ctaccatttttgttgactttgttaataatttgttactatctcttgttgacagttgaggggtcagataaacgaaaatctccggcttaaagaaattcaagga |
213 |
Q |
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| T |
10518712 |
ctaccatttttgttgactttgttaataatttgttactatctcttgttgacagttgaggggtcagataaacgaaaatctccggcttaaagaaattcaagga |
10518811 |
T |
|
| Q |
214 |
aagggatactggaactccaaagatcaaaacattgacaatgaccgaaagattgacaaaacaaacaatggcattcctcctcctaccctgtcatggaaatccg |
313 |
Q |
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| T |
10518812 |
aagggatactggaactccaaagatcaaaacattgacaatgaccgaaagattgaaaaaacaaacaatggcattcctcctcctaacctgccatggaaatccg |
10518911 |
T |
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| Q |
314 |
gtaacagcgaaaatgaagtttcccttaaggatcttctgatgcacaaagatatgtgggaagacgaagacaaaactcgaattgagttgcttaaactcttgaa |
413 |
Q |
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| T |
10518912 |
gtaacagcgaaaatgaagtttcccttaaggatcttctgatgcacaaagatatgtgggaagacgaggacaaaactcgaattgagttgcttaaactcttgaa |
10519011 |
T |
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| Q |
414 |
aacaggacaaaaatcagcacatgctaattccgctactgaaccggaaccaatctcaaaagacatagaagtga |
484 |
Q |
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| T |
10519012 |
aacaggacaaaaatcagcacctgctaattccgctgctaaaccggaaccaatctcaaaagacatagaagtga |
10519082 |
T |
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