View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6707_high_9 (Length: 240)
Name: NF6707_high_9
Description: NF6707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6707_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 20550062 - 20550219
Alignment:
| Q |
1 |
tcaaaatggacattcagttaaaggagatgaaaattcaacaaatctaagtttgttagtgtgaatcaaataaacgtaaagtttgacaacagtttcattttca |
100 |
Q |
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| T |
20550062 |
tcaaaatgaacattcagttaaaggagaagaaa-ttcaacaaatctaagtttgttggtgtgaatcaaataaacgtaaagtttgacaatagtttcattttca |
20550160 |
T |
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| Q |
101 |
aatgatgcctaagataatctgaggcattgcaattccagaacaactctcaaatattatta |
159 |
Q |
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| T |
20550161 |
aatgatgcctaagataatctgaggcatcgcaattccagaacaactctcaaatattatta |
20550219 |
T |
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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 240
Target Start/End: Original strand, 20550252 - 20550285
Alignment:
| Q |
207 |
ccttaaagagctcaaagctacaacaaatagaaac |
240 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
20550252 |
ccttaaagagctcaaagctacaacaaatagaaac |
20550285 |
T |
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