View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6707_low_1 (Length: 786)

Name: NF6707_low_1
Description: NF6707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6707_low_1
NF6707_low_1
[»] chr4 (1 HSPs)
chr4 (1-776)||(27966546-27967320)


Alignment Details
Target: chr4 (Bit Score: 673; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 673; E-Value: 0
Query Start/End: Original strand, 1 - 776
Target Start/End: Complemental strand, 27967320 - 27966546
Alignment:
Q  1 cttgcattgtttatacggcttaaaacattgtctcaacagtgtgccatatttcattgccaatccttcgtcatttatatttgtccattcttgatgatatttt 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27967320 cttgcattgtttatacggctgaaaacattgtctcaacagtgtgccatatttcattgccaatccttcgtcatttatatttgtccattcttgatgatatttt 27967221  T
Q  101 tggatgggatatttctatcttactgttttcctcatcttcctaaggaccacaggatacctattattgattccagcatgatctgcacgatgttaaattgcag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27967220 tggatgggatatttctatcttactgttttcctcatcttcctaaggaccacaggatacctattattgattccagcatgatctgcacgatgttaaattgcag 27967121  T
Q  201 actgtagagtggtctccaccctcaaatttaaggacca-catgatccaatagtgagaccaattcaaagaaacagatagtgagggaaagcgaaataaatcac 299  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27967120 actgtagagtggcctccaccctcaaatttaaggaccaacatgatccaataatgagaccaattcaaagaaacagatagtgagggaaagcgaaataaatcac 27967021  T
Q  300 tgaaagccacatcaagatcaactttagcaaaccaccacatgttgttacgtggctcgtttatcatcattaaattcatatttctgcatctttttatcaaaca 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  27967020 tgaaagccacatcaagatcaactttagcaaaccaccacatgttgttacgtggctcgtttatcatcattaaattcatattgctgcatctttttatcaaaca 27966921  T
Q  400 tgctacggaatacaagtcacttaccaaactaaacaacactaactaaagaattcgacataaaaacttacaacttacggtttcagatnnnnnnnnnnnnnnn 499  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||                   
T  27966920 tgctactgaatacaagtcacttaccaaactaaacaacactgactaaagaattcgacataaaaacttacaacttacggtttcagatataaaaaaataaaaa 27966821  T
Q  500 gactacacaaaattgaatatgctattgaaaagaatttttaccaatccttgcaatttactaacttcttacaaaataactgaggccagtagaatgcttacat 599  Q
    ||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||    
T  27966820 gactacacaaaattgaatatgctattgaaaagaa--tttactaatccttgcaatttactaatatcttacaaaataactgaggcctgtagaatgcttacat 27966723  T
Q  600 ttcataatcgaatcaaaaacaaacaaaccggttttatttttaaaaattgaatgaactatatgattgctaaagtgggatacaattgggatatcactgaaca 699  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27966722 ttcataatcgaatcaaaaacaaacaaaccggttttatttttaaaaattgaatgaactatatgattgctaaagtgggatacaattgggatatcactgaaca 27966623  T
Q  700 aaaatgtcatcaatcccagaattgttctaaacaatatagtgaacacacccattcaggatcattggctacttgatgtc 776  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27966622 aaaatgtcatcaatcccagaattgttctaaacaatatagtgaacacacccattcaggatcattggctacttgatgtc 27966546  T

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