View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6707_low_10 (Length: 428)

Name: NF6707_low_10
Description: NF6707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6707_low_10
NF6707_low_10
[»] chr5 (4 HSPs)
chr5 (11-428)||(38390658-38391082)
chr5 (11-367)||(38381783-38382163)
chr5 (11-167)||(38399412-38399568)
chr5 (264-344)||(38399572-38399652)
[»] chr3 (1 HSPs)
chr3 (11-74)||(37840422-37840485)


Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 11 - 428
Target Start/End: Original strand, 38390658 - 38391082
Alignment:
Q  11 catcatcactccaaatgttttcctattaataacctgcatacatgcatcatatttgaataagaataatagaccatatacatatgaattaaattttcaattt 110  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  38390658 catcatcactccaaatattttcctattaataacctgcatacatgcatcatatttgaataagaataatagaccatatacatataaattaaattttcaattt 38390757  T
Q  111 attctaaactgtaactctctctcttctttggtccctaaactataaaaatataataagccatct-------gttattaatccatcaagttagtctctcgat 203  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  38390758 agtctaaactgtaactctctctcttctttggtccctaaactataaaaatataataagccatctttacactgttattaatccatcaagttagtctctcgat 38390857  T
Q  204 tagtttaaaaataagagatataatgatagttcgagggctatctcgatggattgaaaatcatttagaaactacttattatatttctataatttaaggatca 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38390858 tagtttaaaaataagagatataatgatagttcgagggctatctcgatggattgaaaatcatttagaaactacttattatatttctataatttaaggatca 38390957  T
Q  304 actagaatatagaatggtagtttatgtactacatgtatattcaaatacataaaaatattgtgtccctccttgatccctcgtttctaaattgtgtttctta 403  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||  |||||    
T  38390958 actagaatatagaatggtagtttgtgtactacatgtatattcaaatacataaaaatattgtgtcccttcttgatccctcgtttcaaaattgtggctctta 38391057  T
Q  404 taactttaatatttgcaactttttt 428  Q
    ||||| |||||||||||||| ||||    
T  38391058 taactataatatttgcaactatttt 38391082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 11 - 367
Target Start/End: Original strand, 38381783 - 38382163
Alignment:
Q  11 catcatcactccaaatgttttcctattaataacctgcatacatgcatcatatttgaataagaataatagaccatatacatatgaattaaattttcaattt 110  Q
    |||||||| ||||||||||||||||||||||| |||||||||| ||| | |||||||||| |||| ||  |||||||||  | || ||  ||||||| ||    
T  38381783 catcatcattccaaatgttttcctattaataatctgcatacatacataaaatttgaataacaatagtactccatatacaattaaagtatgttttcaaatt 38381882  T
Q  111 attctaaactgtaactctctctctt--------------ctttggtcccta---aactataaaaatataataagccatc-------tgttattaatccat 186  Q
     ||||||| ||||||||||||||||              ||||||||||||   ||||||| ||||||||||| |||||       ||||||||||||||    
T  38381883 gttctaaattgtaactctctctctttctctctcccccctctttggtccctactaaactatagaaatataataatccatccttacactgttattaatccat 38381982  T
Q  187 caagttagtctctcgattagtttaaaaataagagatataatgatagttcgagggctatctcgatggattgaaaatcatttagaaactacttattatattt 286  Q
    |||||||||||| |  ||| ||||||| ||||||  ||||||||||||| ||| ||| ||| ||||||||||| ||  || || ||||||| ||||||||    
T  38381983 caagttagtctcccagttactttaaaattaagaggcataatgatagttcaaggactaactcaatggattgaaagtcgattggagactacttgttatattt 38382082  T
Q  287 ctataatttaaggatcaactagaatatagaatggtagtttatgtactacatgtatattcaaatacataaaaatattgtgtc 367  Q
    ||||||||||  || ||| ||||||| |||||||||||||| ||||||| | |||| ||| | ||||||||||||||||||    
T  38382083 ctataatttagtgaccaaatagaatagagaatggtagtttacgtactacttatataatcagacacataaaaatattgtgtc 38382163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 11 - 167
Target Start/End: Original strand, 38399412 - 38399568
Alignment:
Q  11 catcatcactccaaatgttttcctattaataacctgcatacatgcatcatatt-tgaataagaataatagaccatatacatatgaattaaattttcaatt 109  Q
    |||||||||||||||| |||| |||| |||||||||||||||| ||| | ||  | ||||| |||||||| |||||||||| | || |||||||||||||    
T  38399412 catcatcactccaaatatttttctatcaataacctgcatacatacat-acatcataaataacaataatagtccatatacatttaaagtaaattttcaatt 38399510  T
Q  110 tattctaaactgtaactctctctcttctttggtccctaaactataaaaatataataag 167  Q
    |||||||||||||| |||||||||| || |  ||||||||||||| ||||||||||||    
T  38399511 tattctaaactgtatctctctctctcctcttttccctaaactatagaaatataataag 38399568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 264 - 344
Target Start/End: Original strand, 38399572 - 38399652
Alignment:
Q  264 tttagaaactacttattatatttctataatttaaggatcaactagaatatagaatggtagtttatgtactacatgtatatt 344  Q
    |||||| | |||||||||||||||||||||| | ||| ||| ||||||| |||| ||||||||||||||||||| ||||||    
T  38399572 tttagagagtacttattatatttctataattcagggaccaaatagaatagagaagggtagtttatgtactacatatatatt 38399652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 37840485 - 37840422
Alignment:
Q  11 catcatcactccaaatgttttcctattaataacctgcatacatgcatcatatttgaataagaat 74  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  37840485 catcatcactccatatgttttcctattaataacctgcatacatacatcatatttgaataagaat 37840422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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