View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6707_low_16 (Length: 345)
Name: NF6707_low_16
Description: NF6707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6707_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 42899326 - 42899667
Alignment:
| Q |
1 |
tcacagtccatgatgagtgggacccaccaacagggtcacgtgtctattgttgactctgccaccaacaacatgataaactcaaatggtaattttagtttga |
100 |
Q |
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| T |
42899326 |
tcacagtccatgatgagtgggacccaccaacagggtcacgtgtctattgttgactctgccaccaacaacatgataaactcaaatggtaattttagtttga |
42899425 |
T |
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| Q |
101 |
atttgtcctcatgtgaagaccaaatgataaacaactctttctcttcttctggatttcatggaacttcttttgaggatacttttgctggaaatattcttca |
200 |
Q |
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| T |
42899426 |
atttgtcctcatgtgaagaccaaatgataaacaactctttctcttcttctggatttcatggaacttcttttgaggatacttttgctggaaatattcttca |
42899525 |
T |
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| Q |
201 |
ttcaaatcaagatcataatatcaatcatgatggtgataatgatattacaaaaacaaccaccaatgatgacga---------tggaggaaacaatgcattt |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42899526 |
ttcaaatcaagatcataatatcaatcatgatggtgataatgatattccaaaaacaaccaccaatgatgacgatgttgccgctggaggaaacaatgcattt |
42899625 |
T |
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| Q |
292 |
acaagagatttcttaggtcttaaaccactctctgatagtgat |
333 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
42899626 |
acaagagatttcttaggtcttaaaccactctctgatagtgat |
42899667 |
T |
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