View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6707_low_19 (Length: 300)
Name: NF6707_low_19
Description: NF6707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6707_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 126; Significance: 5e-65; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 13 - 150
Target Start/End: Original strand, 23171387 - 23171524
Alignment:
| Q |
13 |
tggacatcaaaagagaagagatgataaaataaacaagaaaaatggtggatttaaagccatgcatggtggtaacatggtttttatgactgatgctaatcat |
112 |
Q |
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| T |
23171387 |
tggacatgaaaagagaagagatgataaaataaacaagaaaaatggtggatttaaagccatgcaaggtggtaacatggtttttatgactgatgctaatcct |
23171486 |
T |
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| Q |
113 |
ggagggggtcatcatggacatgatggaggtggaggtgg |
150 |
Q |
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| T |
23171487 |
ggagggggtcatcatggacatgatggaggtggaggtgg |
23171524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 141 - 281
Target Start/End: Original strand, 23171563 - 23171698
Alignment:
| Q |
141 |
gtggaggtggaggtggtggcggagggtgttgaggtggcgttggaggcttctgagatatggttggcgatattttgttggattgtatttacttagttgacat |
240 |
Q |
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| T |
23171563 |
gtggaggtggaggtggtggcggagggtgttgaggtggcgttggaggcttctgagatatggttggcggtattttgttggattgtatttacttagttgacat |
23171662 |
T |
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| Q |
241 |
gccaccttatattatatagtcatattttgtaaatatttggt |
281 |
Q |
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| T |
23171663 |
gccacc-----ttatatagtcatattttgtaaatatttggt |
23171698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 108 - 245
Target Start/End: Original strand, 23187491 - 23187634
Alignment:
| Q |
108 |
atcatggagggggtcatcatgga------catgatggaggtggaggtggaggtggtggcggagggtgttgaggtggcgttggaggcttctgagatatggt |
201 |
Q |
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| T |
23187491 |
atcatggagggggttatcatggagggggtcatcatggaggtggtggtggaggtggcggcggagggtgttgagaagacggtggaggcttctgatatatagt |
23187590 |
T |
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| Q |
202 |
tggcgatattttgttggattgtatttacttagttgacatgccac |
245 |
Q |
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| T |
23187591 |
tggcggtattttgttggattgtatttacttagttgacatgccac |
23187634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 135 - 232
Target Start/End: Original strand, 23178992 - 23179094
Alignment:
| Q |
135 |
atggaggtggaggtggaggtggtggcggagggtgttgaggtggcgttggaggcttctgagatatggttggcg-----atattttgttggattgtatttac |
229 |
Q |
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| T |
23178992 |
atggagatggtggtggaggtggtggcggtgggtgttgaggtggtggtggaggcttctgagatatggttggaggtattctattttgttggattgtatttac |
23179091 |
T |
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| Q |
230 |
tta |
232 |
Q |
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| T |
23179092 |
tta |
23179094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 130
Target Start/End: Original strand, 23178875 - 23178909
Alignment:
| Q |
96 |
tgactgatgctaatcatggagggggtcatcatgga |
130 |
Q |
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| T |
23178875 |
tgactgatgctaatcctggagggggtcatcatgga |
23178909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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