View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6707_low_2 (Length: 717)
Name: NF6707_low_2
Description: NF6707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6707_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 91 - 420
Target Start/End: Complemental strand, 11313735 - 11313406
Alignment:
| Q |
91 |
gtgcatgggaaaatgcatgagaaagtaatatatgtttacctttcaagaaataatggttcaaggttgagctagtgttgttgtaaatgtgaagaatgaagaa |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11313735 |
gtgcatgggaaaatgcatgagaaagtaatatatgtttacctttcaagaaataatggttcaaggttgagctagtgttgttgtaaatgtgaagaatgaagaa |
11313636 |
T |
|
| Q |
191 |
ggatgaagaagagagagtgagagtagcgtattattattatgatgatgaaatagatccaagtgtacaatgtgagtatgtaatggagaagagatttataggt |
290 |
Q |
| |
|
||| || ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
11313635 |
ggaggaggaagagaaagtgagagtagtgtattattattatgatgatgaaatagatccaagtgtacaatgtgagtgtgtaatggagaagagatttataggt |
11313536 |
T |
|
| Q |
291 |
gaagaagttaataaggccagactggttttcttcacattacaccgtctcttcttaatctcataagatgtgtcactataaatgctctgaaaggttgttgaaa |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11313535 |
gaagaagttaataaggccagactggttttcttcacattacaccgtctcttcttaatctcataagatgtgtcactataaatgctctgaaaggttgttgaaa |
11313436 |
T |
|
| Q |
391 |
aactttaaagttgaaatcaccccacctgtc |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
11313435 |
aactttaaagttgaaatcaccccacctgtc |
11313406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 468 - 705
Target Start/End: Complemental strand, 11313356 - 11313120
Alignment:
| Q |
468 |
agtagtacaatacaactagctagggcttcttcgttgtaatttcttacacaaattataacaggttgtttaagtgtggcaagcaattaatgaagagaaataa |
567 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11313356 |
agtagtacaatacaactagctagggcttcttcgttgtaatttcttacacaaattataacagggtgtttaagtgtggcaagcaatgaatgaagagaaataa |
11313257 |
T |
|
| Q |
568 |
atgagagtagttgaggaacatagtgagggaaaagcttagggaaacaaacaagcataaagtttttggggtcacatactcaatatataatcttttttagcaa |
667 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11313256 |
atgagagtagttgaggaacatagtgagggaaaagc-tagggaaacaaacaagcataaagtttttggggtcacatactcaatatataatcttttttagcaa |
11313158 |
T |
|
| Q |
668 |
gatgagggtgctgtttttagaacaagagatgtccatct |
705 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
11313157 |
gatgagggtgctgtttttagaacaagagttgtccatct |
11313120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 11313845 - 11313781
Alignment:
| Q |
1 |
caaaaatggggtatagtaataatggtgtcatcccatgaatcaatatcttaagcctactagaaagt |
65 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11313845 |
caaaaatggggtatagtaataatggtgtcatcccatgaatcaatatcttaagcctactagaaagt |
11313781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University