View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6707_low_24 (Length: 244)
Name: NF6707_low_24
Description: NF6707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6707_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 114 - 237
Target Start/End: Original strand, 32928733 - 32928851
Alignment:
| Q |
114 |
atacaatctaactattaatctacttatttgcttttaaaataaaggttaaatgtttgtttaaatccttataaaataaaattatcaacatttgtgttatgaa |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32928733 |
atacaatctaactattaatctacttatttgcttttaaaataaaggttaaatgtttgtttaaatcctt-----ataaaattatcaacatttgtgttatgaa |
32928827 |
T |
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| Q |
214 |
tatatgtatttgtggatgtccatc |
237 |
Q |
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||||||||| ||||||||||||| |
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| T |
32928828 |
tatatgtatcagtggatgtccatc |
32928851 |
T |
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Target: chr5; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 32928627 - 32928700
Alignment:
| Q |
17 |
gaccgcatagcgcagtggattagcgcgtctgacttcggatcagaaggtcgtgggttcgactcccactgtggtcg |
90 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32928627 |
gaccgcatagcgcagtggattagcgcgtctgacttcggatcagaaggtcgtgggttcgactcccactgtggtcg |
32928700 |
T |
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Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 53247436 - 53247509
Alignment:
| Q |
17 |
gaccgcatagcgcagtggattagcgcgtctgacttcggatcagaaggtcgtgggttcgactcccactgtggtcg |
90 |
Q |
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| T |
53247436 |
gaccgcatagcgcagtggattagcgcgtctgacttcggatcagaaggtcgtgggttcgactcccactgtggtcg |
53247509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 489489 - 489416
Alignment:
| Q |
17 |
gaccgcatagcgcagtggattagcgcgtctgacttcggatcagaaggtcgtgggttcgactcccactgtggtcg |
90 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
489489 |
gaccgcatagcgcagtggattagcgcgtctgacttcggatcagaaggtcgtgggttcgactcccactgtggtcg |
489416 |
T |
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Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 41612825 - 41612899
Alignment:
| Q |
17 |
gaccgcatagcgcagtggattagcgcgtctgacttcggatcagaaggtcgtgggttcgactcccactgtggtcgt |
91 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
41612825 |
gaccgcatagcgcagtggattagcgcgtttgacttcggatcaaaaggtcgtgggttcgactcccactgtggtcgt |
41612899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 46750931 - 46751004
Alignment:
| Q |
17 |
gaccgcatagcgcagtggattagcgcgtctgacttcggatcagaaggtcgtgggttcgactcccactgtggtcg |
90 |
Q |
| |
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||||||||| ||||| |||||| | || |||||| |||||| ||||||||||||| ||||||||||||||||| |
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| T |
46750931 |
gaccgcataatgcagtagattagtgtgtttgactttggatcaaaaggtcgtgggtttgactcccactgtggtcg |
46751004 |
T |
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Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 40448476 - 40448549
Alignment:
| Q |
17 |
gaccgcatagcgcagtggattagcgcgtctgacttcggatcagaaggtcgtgggttcgactcccactgtggtcg |
90 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40448476 |
gaccgcatagcgcagtggattagcgcgtttgacttcggatcaaaaggtcgtgggttcgactcccactgtggtcg |
40448549 |
T |
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Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 1483127 - 1483054
Alignment:
| Q |
17 |
gaccgcatagcgcagtggattagcgcgtctgacttcggatcagaaggtcgtgggttcgactcccactgtggtcg |
90 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
1483127 |
gaccgcatagcgcagtggattagcgcgtctgacttcggatcagaaggtcgtgggttcgactaccattgtggtcg |
1483054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 3222588 - 3222661
Alignment:
| Q |
17 |
gaccgcatagcgcagtggattagcgcgtctgacttcggatcagaaggtcgtgggttcgactcccactgtggtcg |
90 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3222588 |
gaccgcatagcgcagtggattagcgcgtttgacttcggatcaaaaggtcgtgggttcgactcccactgtggtcg |
3222661 |
T |
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