View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6707_low_3 (Length: 635)
Name: NF6707_low_3
Description: NF6707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6707_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 13 - 567
Target Start/End: Complemental strand, 33599703 - 33599131
Alignment:
| Q |
13 |
tggacatcaggagcacttgttttaagtctctgttaggtgcnnnnnnnggctagtttttatgtctctattaggtgtgttttggcataacacaggtgtggct |
112 |
Q |
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| T |
33599703 |
tggacagcaggagcacttgttttaagtctctgttaggtgctttttttggctagtttttatgtctctattaggtgtgttttggcataacacaggtgtggct |
33599604 |
T |
|
| Q |
113 |
aatgttggttgagattttcatgagcaacattccaaaacatgatgatctcaatagctttctgagctattattattatattgtcttgcatattgttctatct |
212 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33599603 |
aatgttggttgagattttcatgagtaacattccaaaacatgatgatctcaatagctttctgagctattattattatattgtcttgcatattgttctatct |
33599504 |
T |
|
| Q |
213 |
gtaaaatcatttgccaaaactgcgtaggcttgatgatatagctgaaccaatagctactctttctcttagttgtg--aagtccttttatgtttgatacata |
310 |
Q |
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| T |
33599503 |
gtaaaatcatttgccaaaactgcgtaggcttgatgatatagctgaaccaatggctactctttctcttagttgtgaaaagcccttttatgtttgatacata |
33599404 |
T |
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| Q |
311 |
ttgttggtgcaaggctaaaaatccatttagacacatgtcagctttggaggctgatgtaactccctttatgaacaagctatccgaacacaagtattttcct |
410 |
Q |
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| T |
33599403 |
ttgttggtgcagggctaaaaatccatttagacacatgtcagctttggaggctgatgtaactccctttatgaacaagctatccgaacacaagtattttcct |
33599304 |
T |
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| Q |
411 |
atttgttgattattttgatatatttttaatgtttaattatgtgaatattcatgggcaatgtcatctttttagtgttgcgggttcaa-------------- |
496 |
Q |
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| T |
33599303 |
atttgttgattattttgatatatttttaatgtttaattatgtgaatattcatgggcaatgtcatctttttagtgttgtgggttcaatattcttgaaaaag |
33599204 |
T |
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| Q |
497 |
--tactgctgcgcgtgtgccctttgtcactggtgaccgggaatggttaccttgtattttcaatttattttgtg |
567 |
Q |
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| T |
33599203 |
cttactgctgcgcgtgtggcctttgacactggtgaccgagaatggtaaacttgtattttcaatctattttgtg |
33599131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 188 - 275
Target Start/End: Original strand, 44063090 - 44063173
Alignment:
| Q |
188 |
tattgtcttgcatattgttctatctgtaaaatcatttgccaaaactgcgtaggcttgatgatatagctgaaccaatagctactctttc |
275 |
Q |
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| T |
44063090 |
tattgtcttccatattgttctatctgtgaaatcatttgcaaaaac----taaacttgatgatacagctgaaccaatagctgctctttc |
44063173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 125 - 188
Target Start/End: Original strand, 44063008 - 44063071
Alignment:
| Q |
125 |
gattttcatgagcaacattccaaaacatgatgatctcaatagctttctgagctattattattat |
188 |
Q |
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| T |
44063008 |
gattttcatgagcaacattccagaacatgatgaacccgatagctttcttagctattgttattat |
44063071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 279
Target Start/End: Complemental strand, 46723425 - 46723348
Alignment:
| Q |
202 |
ttgttctatctgtaaaatcatttgccaaaactgcgtaggcttgatgatatagctgaaccaatagctactctttctctt |
279 |
Q |
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| T |
46723425 |
ttgttctgtctgtactatcatttaccaaaattacataggcttaatgatataactgaaccaataaccgctctttctctt |
46723348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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