View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6707_low_4 (Length: 544)

Name: NF6707_low_4
Description: NF6707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6707_low_4
NF6707_low_4
[»] chr5 (12 HSPs)
chr5 (3-523)||(39031583-39032102)
chr5 (366-433)||(39753318-39753385)
chr5 (366-438)||(21067619-21067691)
chr5 (365-431)||(19187150-19187216)
chr5 (365-438)||(36603696-36603769)
chr5 (369-437)||(38282501-38282569)
chr5 (366-413)||(14122929-14122976)
chr5 (369-441)||(28988394-28988468)
chr5 (369-433)||(1179956-1180020)
chr5 (366-433)||(24233184-24233251)
chr5 (369-438)||(36974077-36974146)
chr5 (365-433)||(5984823-5984891)
[»] scaffold0272 (1 HSPs)
scaffold0272 (365-463)||(6085-6183)
[»] chr8 (4 HSPs)
chr8 (366-455)||(40995823-40995912)
chr8 (369-437)||(7222851-7222917)
chr8 (363-403)||(6108601-6108641)
chr8 (363-428)||(12000140-12000205)
[»] chr4 (7 HSPs)
chr4 (369-457)||(27756454-27756542)
chr4 (366-441)||(19328821-19328896)
chr4 (369-427)||(3427880-3427938)
chr4 (363-427)||(25474651-25474715)
chr4 (369-411)||(2652941-2652983)
chr4 (369-437)||(20032920-20032989)
chr4 (369-441)||(3913652-3913724)
[»] chr3 (5 HSPs)
chr3 (366-433)||(1294908-1294975)
chr3 (366-463)||(8936082-8936179)
chr3 (366-427)||(42388754-42388815)
chr3 (366-437)||(43178606-43178677)
chr3 (369-437)||(28957720-28957788)
[»] chr1 (6 HSPs)
chr1 (365-463)||(19940599-19940697)
chr1 (366-463)||(32022616-32022713)
chr1 (365-431)||(1408629-1408695)
chr1 (365-455)||(46289802-46289892)
chr1 (369-430)||(32503012-32503073)
chr1 (366-414)||(34663137-34663185)
[»] chr2 (4 HSPs)
chr2 (365-433)||(9521065-9521133)
chr2 (373-463)||(27322727-27322817)
chr2 (366-439)||(16634421-16634494)
chr2 (366-441)||(9116405-9116480)
[»] chr7 (4 HSPs)
chr7 (366-463)||(30486952-30487049)
chr7 (365-457)||(28710391-28710483)
chr7 (369-433)||(15972139-15972203)
chr7 (366-433)||(47903888-47903953)
[»] chr6 (1 HSPs)
chr6 (370-422)||(6253518-6253570)


Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 3 - 523
Target Start/End: Complemental strand, 39032102 - 39031583
Alignment:
Q  3 aaaatggagacattggtatcagaattcagatccacatatgattaactgatgggcaatgccaaaatccgatgagaaagtgatcagaaagatgcagaagcca 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39032102 aaaatggagacattggtatcagaattcagatccacatatgattaactgatgggcaatgccaaaatccgatgagaaagtgatcagaaagatgcagaagcca 39032003  T
Q  103 tcctgagaggacagcaaccgaactatacatgcagatgcagcagctctaatgaatgaatgtccgtttatttatgaagaagaaaagatggtgcttttgtgtg 202  Q
     || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39032002 cccagagaggacagcaaccgaactatacatgcagatgcagcagctctaatgaatgaatgtccgtttatttatgaagaagaaaagatggtgcttttgtgtg 39031903  T
Q  203 tcagtggaacaatatttgcaaacaaggccaacataaatattactaatttaagacttcnnnnnnncttcttttacataatgctttaagcacggttaaatac 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||    
T  39031902 tcagtggaacaatatttgcaaacaaggccaacataaatattactaatttaagacttctttttttcttcttttacataatgctttaagcacggttaaatac 39031803  T
Q  303 tacgttcccctgagcttaattaaagaagggtcatggacaccggttnnnnnnnnnnnnnngataaagttttaaaatgaaagtaatactttttatgtttttg 402  Q
    |||||||||||||||||||||||||||||||||||| | | ||||              || ||||||||||||||||||||||| |||||||| |||||    
T  39031802 tacgttcccctgagcttaattaaagaagggtcatgggccctggttaaaaaaactaaaaagagaaagttttaaaatgaaagtaatattttttatg-ttttg 39031704  T
Q  403 aatagttgacagcataaatttcaatgtaatatttaccacgtttaattctttaaccggtgcctgcggttaacattatccaataattgataggggcatttca 502  Q
    |||| |||||||||||||||| ||||||||||||||||| ||||| || |||| | ||| | |||||||||||||  ||||||||||| ||| |||||||    
T  39031703 aataattgacagcataaattttaatgtaatatttaccacatttaactccttaatcagtgtccgcggttaacattactcaataattgatcgggacatttca 39031604  T
Q  503 tatatatgcagggatagggtt 523  Q
    ||||||||||||||| |||||    
T  39031603 tatatatgcagggatggggtt 39031583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 366 - 433
Target Start/End: Original strand, 39753318 - 39753385
Alignment:
Q  366 aagttttaaaatgaaagtaatactttttatgtttttgaatagttgacagcataaatttcaatgtaata 433  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||| || |||||||||||||    
T  39753318 aagttttaaaatgaaagtaatactttttatgcttttgaagagttgacagcacaagtttcaatgtaata 39753385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 366 - 438
Target Start/End: Complemental strand, 21067691 - 21067619
Alignment:
Q  366 aagttttaaaatgaaagtaatactttttatgtttttgaatagttgacagcataaatttcaatgtaatatttac 438  Q
    ||||||||||||||||||| ||||||||||| ||||||| || ||||| || || ||||||||||||| ||||    
T  21067691 aagttttaaaatgaaagtactactttttatgcttttgaagagatgacaacacaagtttcaatgtaatacttac 21067619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 365 - 431
Target Start/End: Complemental strand, 19187216 - 19187150
Alignment:
Q  365 aaagttttaaaatgaaagtaatactttttatgtttttgaatagttgacagcataaatttcaatgtaa 431  Q
    |||||||||||||||||  || |||||||||| ||||||| |||||||| || ||||||||||||||    
T  19187216 aaagttttaaaatgaaaacaacactttttatgcttttgaagagttgacaacacaaatttcaatgtaa 19187150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 365 - 438
Target Start/End: Original strand, 36603696 - 36603769
Alignment:
Q  365 aaagttttaaaatgaaagtaatactttttatgtttttgaatagttgacagcataaatttcaatgtaatatttac 438  Q
    ||||||||||||||||||| | |||||||||||||||||| |||||||| || || || ||||| |||| ||||    
T  36603696 aaagttttaaaatgaaagtgacactttttatgtttttgaagagttgacaacacaagttccaatgcaatacttac 36603769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 38282569 - 38282501
Alignment:
Q  369 ttttaaaatgaaagtaatactttttatgtttttgaatagttgacagcataaatttcaatgtaatattta 437  Q
    ||||||||||||| ||| ||||||||| ||||| || |||||||| || |||||| |||||||||||||    
T  38282569 ttttaaaatgaaaataacactttttatatttttaaagagttgacaacacaaattttaatgtaatattta 38282501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 366 - 413
Target Start/End: Complemental strand, 14122976 - 14122929
Alignment:
Q  366 aagttttaaaatgaaagtaatactttttatgtttttgaatagttgaca 413  Q
    |||||||||||||||||||| ||||| |||| ||||||||||||||||    
T  14122976 aagttttaaaatgaaagtaacactttatatgcttttgaatagttgaca 14122929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 369 - 441
Target Start/End: Original strand, 28988394 - 28988468
Alignment:
Q  369 ttttaaaatgaaagtaatacttttt--atgtttttgaatagttgacagcataaatttcaatgtaatatttaccac 441  Q
    ||||||||||||||||| |||||||  ||| ||||||| |||||||  || |||||||||||||||| |||||||    
T  28988394 ttttaaaatgaaagtaacactttttttatgcttttgaaaagttgacgacacaaatttcaatgtaataattaccac 28988468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 433
Target Start/End: Complemental strand, 1180020 - 1179956
Alignment:
Q  369 ttttaaaatgaaagtaatactttttatgtttttgaatagttgacagcataaatttcaatgtaata 433  Q
    ||||||||| ||| ||| ||||||||||||||| |  |||||||| ||||| |||||||||||||    
T  1180020 ttttaaaataaaaataacactttttatgttttttagaagttgacaacataagtttcaatgtaata 1179956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 433
Target Start/End: Complemental strand, 24233251 - 24233184
Alignment:
Q  366 aagttttaaaatgaaagtaatactttttatgtttttgaatagttgacagcataaatttcaatgtaata 433  Q
    |||||| || |||||||||| ||||||||| |||||||| ||||||||||| || || ||||| ||||    
T  24233251 aagtttgaagatgaaagtaacactttttatatttttgaaaagttgacagcacaagttccaatgcaata 24233184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 438
Target Start/End: Original strand, 36974077 - 36974146
Alignment:
Q  369 ttttaaaatgaaagtaatactttttatgtttttgaatagttgacagcataaatttcaatgtaatatttac 438  Q
    ||||||||||||| ||| || ||||||||||||||| |||||||| || || ||  |||| |||||||||    
T  36974077 ttttaaaatgaaaataacacattttatgtttttgaagagttgacaacacaagttctaatgcaatatttac 36974146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 365 - 433
Target Start/End: Original strand, 5984823 - 5984891
Alignment:
Q  365 aaagttttaaaatgaaagtaatactttttatgtttttgaatagttgacagcataaatttcaatgtaata 433  Q
    ||||||||||| ||||| ||||| ||| ||  |||||||| ||||||| ||| || |||||||||||||    
T  5984823 aaagttttaaattgaaaataatattttctaaatttttgaaaagttgactgcacaattttcaatgtaata 5984891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0272 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 365 - 463
Target Start/End: Complemental strand, 6183 - 6085
Alignment:
Q  365 aaagttttaaaatgaaagtaatactttttatgtttttgaatagttgacagcataaatttcaatgtaatatttaccacgtttaattctttaaccggtgcc 463  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||| |||| |||| || ||| | || |||||| |||||    
T  6183 aaagttttaaaatgaaagtaacactttttatgtttttgaaaagttgacagcataaattccaatgcaatacttactacatttgactccttaaccagtgcc 6085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 9e-22; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 366 - 455
Target Start/End: Original strand, 40995823 - 40995912
Alignment:
Q  366 aagttttaaaatgaaagtaatactttttatgtttttgaatagttgacagcataaatttcaatgtaatatttaccacgtttaattctttaa 455  Q
    |||||||||||||||| ||| |||||||||||||||||| |||||||| || |||||||||||||||| |||| || ||| |||||||||    
T  40995823 aagttttaaaatgaaaataacactttttatgtttttgaagagttgacaacacaaatttcaatgtaatacttactacatttgattctttaa 40995912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 369 - 437
Target Start/End: Original strand, 7222851 - 7222917
Alignment:
Q  369 ttttaaaatgaaagtaatactttttatgtttttgaatagttgacagcataaatttcaatgtaatattta 437  Q
    ||||||||| ||||||| ||||||||||||||||||||||  |||||| ||||||||||||||||||||    
T  7222851 ttttaaaataaaagtaacactttttatgtttttgaatagt--acagcacaaatttcaatgtaatattta 7222917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 403
Target Start/End: Complemental strand, 6108641 - 6108601
Alignment:
Q  363 ataaagttttaaaatgaaagtaatactttttatgtttttga 403  Q
    ||||| ||||||||||||| |||||||||||||||||||||    
T  6108641 ataaaattttaaaatgaaaataatactttttatgtttttga 6108601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 428
Target Start/End: Original strand, 12000140 - 12000205
Alignment:
Q  363 ataaagttttaaaatgaaagtaatactttttatgtttttgaatagttgacagcataaatttcaatg 428  Q
    ||||||||||||| ||||| ||||| |||||||| ||||||   |||||||||| ||||| |||||    
T  12000140 ataaagttttaaagtgaaaataatattttttatgcttttgagatgttgacagcacaaattccaatg 12000205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 369 - 457
Target Start/End: Complemental strand, 27756542 - 27756454
Alignment:
Q  369 ttttaaaatgaaagtaatactttttatgtttttgaatagttgacagcataaatttcaatgtaatatttaccacgtttaattctttaacc 457  Q
    ||||||||||||| ||| |||||||||| ||||||| |||||||| || |||||||||||||||| |||| || ||| |||| ||||||    
T  27756542 ttttaaaatgaaaataacactttttatgcttttgaagagttgacaacacaaatttcaatgtaatacttactacatttgattccttaacc 27756454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 441
Target Start/End: Complemental strand, 19328896 - 19328821
Alignment:
Q  366 aagttttaaaatgaaagtaatactttttatgtttttgaatagttgacagcataaatttcaatgtaatatttaccac 441  Q
    |||||||||||||||||||| |||||||||  ||||||| |||||| |||| || || |||||||||| |||||||    
T  19328896 aagttttaaaatgaaagtaacactttttatacttttgaagagttgatagcacaagttccaatgtaatacttaccac 19328821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 427
Target Start/End: Complemental strand, 3427938 - 3427880
Alignment:
Q  369 ttttaaaatgaaagtaatactttttatgtttttgaatagttgacagcataaatttcaat 427  Q
    ||||||||||||| ||| |||||||||||||||||| |||||||| || || |||||||    
T  3427938 ttttaaaatgaaaataacactttttatgtttttgaagagttgacaacacaagtttcaat 3427880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 427
Target Start/End: Original strand, 25474651 - 25474715
Alignment:
Q  363 ataaagttttaaaatgaaagtaatactttttatgtttttgaatagttgacagcataaatttcaat 427  Q
    ||||| ||||||||||||| ||| | |||||||| ||||||| |||||||| || ||||||||||    
T  25474651 ataaaattttaaaatgaaaataacattttttatgcttttgaagagttgacaacacaaatttcaat 25474715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 369 - 411
Target Start/End: Original strand, 2652941 - 2652983
Alignment:
Q  369 ttttaaaatgaaagtaatactttttatgtttttgaatagttga 411  Q
    ||||||||||||| | |||||||||||||||||||| ||||||    
T  2652941 ttttaaaatgaaaatgatactttttatgtttttgaagagttga 2652983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 20032989 - 20032920
Alignment:
Q  369 ttttaaaatgaa-agtaatactttttatgtttttgaatagttgacagcataaatttcaatgtaatattta 437  Q
    |||||||||||| | ||| |||||||||||||||||| ||||||||  | || || ||||||||||||||    
T  20032989 ttttaaaatgaagaataacactttttatgtttttgaagagttgacaatacaagttccaatgtaatattta 20032920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 369 - 441
Target Start/End: Complemental strand, 3913724 - 3913652
Alignment:
Q  369 ttttaaaatgaaagtaatactttttatgtttttgaatagttgacagcataaatttcaatgtaatatttaccac 441  Q
    ||||||||||||||||| |||||||||  ||||||| |||| ||| || || || ||| |||||| |||||||    
T  3913724 ttttaaaatgaaagtaacactttttatacttttgaagagttaacaacacaagttccaacgtaatacttaccac 3913652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 9e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 366 - 433
Target Start/End: Original strand, 1294908 - 1294975
Alignment:
Q  366 aagttttaaaatgaaagtaatactttttatgtttttgaatagttgacagcataaatttcaatgtaata 433  Q
    |||||||||||||||||||| | ||||||||||| |||| || |||||||| ||||||||||||||||    
T  1294908 aagttttaaaatgaaagtaacattttttatgtttatgaagagctgacagcacaaatttcaatgtaata 1294975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 366 - 463
Target Start/End: Original strand, 8936082 - 8936179
Alignment:
Q  366 aagttttaaaatgaaagtaatactttttatgtttttgaatagttgacagcataaatttcaatgtaatatttaccacgtttaattctttaaccggtgcc 463  Q
    |||||||||||| ||||||| |||||||||| |||| ||  |||||||||| || ||||||||||||| || |||| ||||| || |||||| |||||    
T  8936082 aagttttaaaataaaagtaacactttttatgcttttcaagggttgacagcacaagtttcaatgtaatacttgccacatttaactccttaaccagtgcc 8936179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 366 - 427
Target Start/End: Complemental strand, 42388815 - 42388754
Alignment:
Q  366 aagttttaaaatgaaagtaatactttttatgtttttgaatagttgacagcataaatttcaat 427  Q
    ||||||||| |||||| ||| |||||||||||||||||| ||||||||||| ||||| ||||    
T  42388815 aagttttaagatgaaaataacactttttatgtttttgaaaagttgacagcacaaattccaat 42388754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 366 - 437
Target Start/End: Complemental strand, 43178677 - 43178606
Alignment:
Q  366 aagttttaaaatgaaagtaatactttttatgtttttgaatagttgacagcataaatttcaatgtaatattta 437  Q
    |||||||||||| ||||||| | |||||||  |||| || ||||||||| | ||||||||||||||||||||    
T  43178677 aagttttaaaataaaagtaacattttttatacttttcaaaagttgacagtacaaatttcaatgtaatattta 43178606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 369 - 437
Target Start/End: Original strand, 28957720 - 28957788
Alignment:
Q  369 ttttaaaatgaaagtaatactttttatgtttttgaatagttgacagcataaatttcaatgtaatattta 437  Q
    ||||||||| ||| ||| ||||||||| |||| ||| ||||||||  || ||||| |||||||||||||    
T  28957720 ttttaaaataaaaataacactttttatattttcgaagagttgacaatatgaattttaatgtaatattta 28957788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 365 - 463
Target Start/End: Original strand, 19940599 - 19940697
Alignment:
Q  365 aaagttttaaaatgaaagtaatactttttatgtttttgaatagttgacagcataaatttcaatgtaatatttaccacgtttaattctttaaccggtgcc 463  Q
    ||||||||||| ||||| ||| |||||||||| ||||||  |||||||||||||| |||||||| |||| |||| || ||| |||| |||||| |||||    
T  19940599 aaagttttaaagtgaaaataacactttttatgcttttgaggagttgacagcataagtttcaatgcaatacttactacatttgattccttaaccagtgcc 19940697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 366 - 463
Target Start/End: Original strand, 32022616 - 32022713
Alignment:
Q  366 aagttttaaaatgaaagtaatactttttatgtttttgaatagttgacagcataaatttcaatgtaatatttaccacgtttaattctttaaccggtgcc 463  Q
    |||||||||||| |||||||||||||||||  |||| || ||||||||| | || ||||||||||||| ||||||| ||| | || |||||| |||||    
T  32022616 aagttttaaaataaaagtaatactttttatacttttaaaaagttgacagtacaattttcaatgtaatacttaccacatttgactccttaaccagtgcc 32022713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 365 - 431
Target Start/End: Complemental strand, 1408695 - 1408629
Alignment:
Q  365 aaagttttaaaatgaaagtaatactttttatgtttttgaatagttgacagcataaatttcaatgtaa 431  Q
    ||||||||||||||||| ||| |||||||||||||||||| |||||||| || || || ||||||||    
T  1408695 aaagttttaaaatgaaaataaaactttttatgtttttgaagagttgacaacacaagttccaatgtaa 1408629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 455
Target Start/End: Original strand, 46289802 - 46289892
Alignment:
Q  365 aaagttttaaaatgaaagtaatactttttatgtttttgaatagttgacagcataaatttcaatgtaatatttaccacgtttaattctttaa 455  Q
    ||||||||||| ||||| ||| ||||||||||||||||||  |||||||||| || || ||||| |||| |||| ||  || |||||||||    
T  46289802 aaagttttaaagtgaaaataacactttttatgtttttgaagtgttgacagcaaaagttacaatgcaatacttactacacttgattctttaa 46289892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 369 - 430
Target Start/End: Complemental strand, 32503073 - 32503012
Alignment:
Q  369 ttttaaaatgaaagtaatactttttatgtttttgaatagttgacagcataaatttcaatgta 430  Q
    ||||||||| ||||||||||||||||| ||||| || | ||||||||| ||||| |||||||    
T  32503073 ttttaaaataaaagtaatactttttatattttttaaaaattgacagcacaaattccaatgta 32503012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 366 - 414
Target Start/End: Complemental strand, 34663185 - 34663137
Alignment:
Q  366 aagttttaaaatgaaagtaatactttttatgtttttgaatagttgacag 414  Q
    |||||||||||||||||||| |||||||||  ||||||| |||||||||    
T  34663185 aagttttaaaatgaaagtaacactttttatacttttgaaaagttgacag 34663137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 365 - 433
Target Start/End: Original strand, 9521065 - 9521133
Alignment:
Q  365 aaagttttaaaatgaaagtaatactttttatgtttttgaatagttgacagcataaatttcaatgtaata 433  Q
    ||||||||||||| ||||||| |||||||||  |||| || ||||||||||| || |||||||||||||    
T  9521065 aaagttttaaaataaaagtaacactttttatacttttcaaaagttgacagcacaagtttcaatgtaata 9521133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 463
Target Start/End: Complemental strand, 27322817 - 27322727
Alignment:
Q  373 aaaatgaaagtaatactttttatgtttttgaatagttgacagcataaatttcaatgtaatatttaccacgtttaattctttaaccggtgcc 463  Q
    ||||| |||||||||||||||||| |||| || ||||||||||| || || ||||| |||| ||||||| ||| | || |||||| |||||    
T  27322817 aaaataaaagtaatactttttatgcttttcaagagttgacagcacaagttccaatgcaatacttaccacatttgactccttaaccagtgcc 27322727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 366 - 439
Target Start/End: Complemental strand, 16634494 - 16634421
Alignment:
Q  366 aagttttaaaatgaaagtaatactttttatgtttttgaatagttgacagcataaatttcaatgtaatatttacc 439  Q
    ||||||||||||  ||| || | |||||||| ||||||| ||||||||||| ||||| |||||||||| |||||    
T  16634494 aagttttaaaatagaagcaacattttttatgcttttgaaaagttgacagcacaaattccaatgtaatacttacc 16634421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 441
Target Start/End: Original strand, 9116405 - 9116480
Alignment:
Q  366 aagttttaaaatgaaagtaatactttttatgtttttgaatagttgacagcataaatttcaatgtaatatttaccac 441  Q
    |||||||||||| ||||||| ||||| |||  |||| || ||||||||||| || || ||||| ||||||||||||    
T  9116405 aagttttaaaataaaagtaacactttgtatacttttcaaaagttgacagcacaagttccaatgcaatatttaccac 9116480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 366 - 463
Target Start/End: Original strand, 30486952 - 30487049
Alignment:
Q  366 aagttttaaaatgaaagtaatactttttatgtttttgaatagttgacagcataaatttcaatgtaatatttaccacgtttaattctttaaccggtgcc 463  Q
    |||||||||||| ||||||| | ||||||| ||||| || ||||||| ||| ||||||||||| |||| |||| || ||| | || |||||| |||||    
T  30486952 aagttttaaaataaaagtaacattttttatattttttaaaagttgacggcacaaatttcaatgcaatacttacgacatttgactccttaaccagtgcc 30487049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 457
Target Start/End: Original strand, 28710391 - 28710483
Alignment:
Q  365 aaagttttaaaatgaaagtaatactttttatgtttttgaatagttgacagcataaatttcaatgtaatatttaccacgtttaattctttaacc 457  Q
    ||||||||||| ||||| ||| | |||||||||||||||  ||||  ||||| ||||| |||||||||| |||| || ||| |||| ||||||    
T  28710391 aaagttttaaagtgaaaataacaatttttatgtttttgaggagttagcagcacaaattccaatgtaatacttactacatttgattccttaacc 28710483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 369 - 433
Target Start/End: Original strand, 15972139 - 15972203
Alignment:
Q  369 ttttaaaatgaaagtaatactttttatgtttttgaatagttgacagcataaatttcaatgtaata 433  Q
    ||||||| ||||| ||||||||||||| |||||||  | |||||| || || |||||||||||||    
T  15972139 ttttaaagtgaaaataatactttttatatttttgaggatttgacaacacaagtttcaatgtaata 15972203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 366 - 433
Target Start/End: Original strand, 47903888 - 47903953
Alignment:
Q  366 aagttttaaaatgaaagtaatactttttatgtttttgaatagttgacagcataaatttcaatgtaata 433  Q
    |||||||||||||||| ||| |||||  ||||||||||  |||||||| || ||||| ||||||||||    
T  47903888 aagttttaaaatgaaaataacacttt--atgtttttgaggagttgacaacacaaattccaatgtaata 47903953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 422
Target Start/End: Complemental strand, 6253570 - 6253518
Alignment:
Q  370 tttaaaatgaaagtaatactttttatgtttttgaatagttgacagcataaatt 422  Q
    |||||| ||||| |||||||||||||  |||||| |||||||||||| |||||    
T  6253570 tttaaagtgaaaataatactttttattcttttgagtagttgacagcacaaatt 6253518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University