View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6707_low_7 (Length: 480)
Name: NF6707_low_7
Description: NF6707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6707_low_7 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 1 - 480
Target Start/End: Original strand, 28609160 - 28609647
Alignment:
| Q |
1 |
acgatgaacagcaatgattctatttcttattcagaagttgatgtccattctgctgaagatattcccacatccctcaatgagatagaaaaaattggttgcg |
100 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28609160 |
acgatgaacaacaatgattctatatcttattcagaagttgatgtccattctgctgaagatattcccacatccctcaatgagatagaaaaaattggttgcg |
28609259 |
T |
|
| Q |
101 |
atttatacgtagttggacagggaaatcgtaggaacactcgagtctttttaaacttattggaatggtgtgactgtccagaacttggggttttaggggatat |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28609260 |
atttatacatagttggacagggaaatcgtaggaacactcgagtctttttaaacttattggaatggtgtgactgtccagaacttggggttttaggggatat |
28609359 |
T |
|
| Q |
201 |
tttagcatcaaacaattttggttcgggctcatcagtgctagttgtgcaacaatatgggtatggaggaatggttttgggaaagcaaccaaaccaggtgacc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
28609360 |
tttagcatcaaacaattttggttcgggctcatcagtgctagttgtgcaacaatatgggtatggaggaatggttttgggaaagcaaccaaaccaggtgaac |
28609459 |
T |
|
| Q |
301 |
gacaataatgatgcttttgaggtgttgtagtgaagaaacaataagaataatggttggtgaaaaagctttccaacaaaaatttgagaatgtttgagacaac |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
28609460 |
gacaataatgatgcttttgaggtgttgtagtgaagaaacaataagaataatggttggtgaaaaagctttccaacataaatttgagaatgtttgagacaac |
28609559 |
T |
|
| Q |
401 |
actagatttctttttgtatttagatttggtacccc--------gatgctcatagtgttccattttggttacctgcagcagtacacatt |
480 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
28609560 |
actagatttcgttttgtatttagatttggtaccccaattataggatgctcatagtgttccattttggttacctacagcagtacacatt |
28609647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 170; Significance: 5e-91; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 2 - 355
Target Start/End: Complemental strand, 437743 - 437390
Alignment:
| Q |
2 |
cgatgaacagcaatgattctatttcttattcagaagttgatgtccattctgctgaagatattcccacatccctcaatgagatagaaaaaattggttgcga |
101 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||| |||||||||| | |||||||||||||||| |||||||||| ||||||| || |||| | |
|
|
| T |
437743 |
cgatgaacaacaatgattctatatcttattcagaagttaatgtccattcaggtgaagatattcccacaaccctcaatgaactagaaaatttttattgcaa |
437644 |
T |
|
| Q |
102 |
tttatacgtagttggacagggaaatcgtaggaacactcgagtctttttaaacttattggaatggtgtgactgtccagaacttggggttttaggggatatt |
201 |
Q |
| |
|
|||||| |||||||||| || ||||||||||||| ||| ||||||||||| |||||||| |||||||| |||||||||||||| ||||||||||| ||| |
|
|
| T |
437643 |
tttatatatagttggacaagggaatcgtaggaacaatcgtgtctttttaaatttattggactggtgtgattgtccagaacttggagttttaggggacatt |
437544 |
T |
|
| Q |
202 |
ttagcatcaaacaattttggttcgggctcatcagtgctagttgtgcaacaatatgggtatggaggaatggttttgggaaagcaaccaaaccaggtgaccg |
301 |
Q |
| |
|
|| |||||| | ||||||| |||| | ||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||| |||||| |
|
|
| T |
437543 |
ttggcatcagataattttgtttcgagatcatctgtgctagttgtgcaacaatatgggtatgggggaatggttttggaaaagcaacccaaccatgtgacca |
437444 |
T |
|
| Q |
302 |
acaataatgatgcttttgaggtgttgtagtgaagaaacaataagaataatggtt |
355 |
Q |
| |
|
|||||| |||| ||||||| ||||||||||| | ||| |||||||||||| |
|
|
| T |
437443 |
ccaataacgatggttttgagtggttgtagtgaatgcagaatgagaataatggtt |
437390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 8e-59; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 12 - 358
Target Start/End: Original strand, 13653042 - 13653389
Alignment:
| Q |
12 |
caatgattctatttcttattcagaagttgatgtccattctgctgaagatattcccacatccctcaatgagatagaaaaaattggttgcgatttatacgta |
111 |
Q |
| |
|
|||||||| ||| || |||||||| |||||||||||||| | |||||||||||||||| ||| |||| |||| ||| ||||||| ||||||||| || |
|
|
| T |
13653042 |
caatgattttatatcctattcagaggttgatgtccattcaggtgaagatattcccacaatccttgatgatttagacaaatttggttgtgatttatacata |
13653141 |
T |
|
| Q |
112 |
gttggacagggaaatcgtaggaacactcgagtctttttaaacttattggaatggtgtgactgtccagaacttggggttttaggggatattttagcatcaa |
211 |
Q |
| |
|
|||||||| || ||| ||| || ||||| ||||| || ||||||||||||||||| |||||||||||||| ||| | |||||||| || ||||||| |
|
|
| T |
13653142 |
gttggacaagggcatcatagaaatgttcgagccttttcaagtttattggaatggtgtgattgtccagaacttggagttatcggggatatgttggcatcaa |
13653241 |
T |
|
| Q |
212 |
acaattttggttcgggctcatcagtgctagttgtgcaacaatatgggtatggaggaatggttttgggaaagcaaccaaaccaggtgaccgacaataatga |
311 |
Q |
| |
|
|||||||| ||||||| ||||||||| |||||||||||||||||||||| |||||||| |||| |||||| ||||| || || ||| || ||||| || |
|
|
| T |
13653242 |
acaattttagttcgggttcatcagtgttagttgtgcaacaatatgggtacggaggaatagtttcgggaaatcaacctaatcatgtgtccactaataaaga |
13653341 |
T |
|
| Q |
312 |
tgcttttgagg-tgttgtagtgaagaaacaataagaataatggttggt |
358 |
Q |
| |
|
|| |||||||| |||| || ||| ||||||||||||||||||||| |
|
|
| T |
13653342 |
tggttttgaggaacttgtcgtatagacacaataagaataatggttggt |
13653389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 12 - 322
Target Start/End: Original strand, 13660542 - 13660852
Alignment:
| Q |
12 |
caatgattctatttcttattcagaagttgatgtccattctgctgaagatattcccacatccctcaatgagatagaaaaaattggttgcgatttatacgta |
111 |
Q |
| |
|
|||||||||||| || ||||| || |||||||||||||| |||||||||||||||| ||||||||| |||| ||| |||||| ||||||||| || |
|
|
| T |
13660542 |
caatgattctatatcatattcggaggttgatgtccattcaagtgaagatattcccacaatcctcaatgatttagacaaatttggttatgatttatacata |
13660641 |
T |
|
| Q |
112 |
gttggacagggaaatcgtaggaacactcgagtctttttaaacttattggaatggtgtgactgtccagaacttggggttttaggggatattttagcatcaa |
211 |
Q |
| |
|
|||||||| || ||| ||| || ||||| ||||| || ||||||||||||||||| |||||||||||||| ||| | |||||||| || ||||||| |
|
|
| T |
13660642 |
gttggacaagggcatcatagaaatgttcgagccttttcaagtttattggaatggtgtgattgtccagaacttggagttatcggggatatgttggcatcaa |
13660741 |
T |
|
| Q |
212 |
acaattttggttcgggctcatcagtgctagttgtgcaacaatatgggtatggaggaatggttttgggaaagcaaccaaaccaggtgaccgacaataatga |
311 |
Q |
| |
|
|||||||| ||||||| || || ||||| |||||||||||||||||||| ||||||||||||| |||||| ||||| ||||| ||| || ||||| || |
|
|
| T |
13660742 |
acaattttagttcgggttcgtctgtgctcgttgtgcaacaatatgggtacggaggaatggtttcgggaaatcaacctaaccatgtgtccactaataaaga |
13660841 |
T |
|
| Q |
312 |
tgcttttgagg |
322 |
Q |
| |
|
|| |||||||| |
|
|
| T |
13660842 |
tggttttgagg |
13660852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University