View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6708_high_10 (Length: 368)
Name: NF6708_high_10
Description: NF6708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6708_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 3990384 - 3990735
Alignment:
| Q |
1 |
tttgttgtagctcacaatgttagatttagagaaaatttacaagcggaagctcttgttgatttgattttacctctacctgaaatgatgaataactagtaga |
100 |
Q |
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| T |
3990384 |
tttgttgtagctcactatgttagatttagagagaatttacaggcggaagctcttgtttatttgattttacctctacctgaaatgatgaataactagtaga |
3990483 |
T |
|
| Q |
101 |
tagtgagattcagaaagaaaattaccatcaagaacatctccatagcgagcaaaactttctcggagactcgcatcatcagtgctatacgaaatacctgcat |
200 |
Q |
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| T |
3990484 |
tagtgagagtcagaaagaaaattaccatcaagaacatctccatagcgagcaaaactttctcggagacccgcatcatcagtgctatacgaaatacctacat |
3990583 |
T |
|
| Q |
201 |
tgccattgaaaattagaaaattatagctatattccatttagacaacaattcaacatgataaactaatgtacctccaacataaagctttgcagatgacatg |
300 |
Q |
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| T |
3990584 |
tactattgaaaattagaaaattatagctacattccatttag---acaattcaacatgataaactaatgtacctccaacataaagctttgcagatgacatg |
3990680 |
T |
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| Q |
301 |
gatctaattgcttggaatgccaaaggagtagacatagataaatcatgattgatgt |
355 |
Q |
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| T |
3990681 |
gatctaattgcttggaatgccaaaggagtagacatagataaatcatgatttatgt |
3990735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 110 - 355
Target Start/End: Original strand, 3985687 - 3985929
Alignment:
| Q |
110 |
tcagaaagaaaattaccatcaagaacatctccatagcgagcaaaactttctcggagactcgcatcatcagtgctatacgaaatacctgcattgccattga |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| | |||||||||||||| |||| ||||||||||| ||||| |
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| T |
3985687 |
tcagaaagaaaattaccatcaagaacatctccatagcgagaaaaagcttctcggagaccagtttcatcagtgctatatgaaacacctgcattgcaattga |
3985786 |
T |
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| Q |
210 |
aaattagaaaattatagctatattccatttagacaacaattcaacatgataaactaatgtacctccaacataaagctttgcagatgacatggatctaatt |
309 |
Q |
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| T |
3985787 |
aatttgaaaaattatagtcacatttcattt---ttaaaatttaacatgatagacaaacatacctccaataaaaagctttgcagatgacatggatctaatt |
3985883 |
T |
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| Q |
310 |
gcttggaatgccaaaggagtagacatagataaatcatgattgatgt |
355 |
Q |
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||||| ||| | ||||||||||||||||||||||||||||||||| |
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| T |
3985884 |
gcttgaaataacgaaggagtagacatagataaatcatgattgatgt |
3985929 |
T |
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