View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6708_high_16 (Length: 248)
Name: NF6708_high_16
Description: NF6708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6708_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 13312200 - 13311964
Alignment:
| Q |
1 |
tatccacctcattaatcattggcaggaattcagcagcaggttggaataaattaaccttcccttgtaattggatcataagagagacatcaatttattaaga |
100 |
Q |
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| T |
13312200 |
tatccacctcattaatcattggcaggaattcagcagcaggttggaataaattaaccttcccttgtaattggatcataagagagatatcaatttattaaga |
13312101 |
T |
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| Q |
101 |
ttctcgaagagatattcataattggaagagatgtagacacattgaccacagtacctgcttgtctgcggacttaatgatgcaattagggtggttatgtcat |
200 |
Q |
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| T |
13312100 |
ttctcgaagagatattcataattggaaga-atgtagacacattgaccacagtacctgcttgtctgcggacttaatgatgcaattagggtggttatgtgat |
13312002 |
T |
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| Q |
201 |
atagataaagattgtctaacagggcccatgatgtccat |
238 |
Q |
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| T |
13312001 |
atagataaagattgtctaacagggccaatgatgtccat |
13311964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 12907935 - 12908179
Alignment:
| Q |
1 |
tatccacctcattaatcattggcaggaattcagcagcaggttggaataaattaaccttc---ccttgtaatt----ggatcataagagagacatcaattt |
93 |
Q |
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| T |
12907935 |
tatccacctcattaatcattggcaggaattcagcagcaggttggaataaattaaccttcttgccctgtaattttaaggatcataagagagacagcaattt |
12908034 |
T |
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| Q |
94 |
attaagattctcgaagagatattcataattggaagagatgtagacacattgaccacagtacctgcttgtctgcggacttaatgatgcaattagggtggtt |
193 |
Q |
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| T |
12908035 |
attaagatactcgaagggatattcataataggatgagaggtagaaactttgaccacagtacctgcttgtctgtagacttaacgatgcaattagggtggtt |
12908134 |
T |
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| Q |
194 |
atgtcatatagataaagattgtctaacagggcccatgatgtccat |
238 |
Q |
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| T |
12908135 |
atgtgacacagattgagattgtctaacagggccaatgatgtccat |
12908179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 1566278 - 1566229
Alignment:
| Q |
6 |
acctcattaatcattggcaggaattcagcagcaggttggaataaattaac |
55 |
Q |
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| T |
1566278 |
acctcatcgatcataggcaggaattcagcagcaggttggaataaattaac |
1566229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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