View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6708_high_18 (Length: 242)
Name: NF6708_high_18
Description: NF6708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6708_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 78 - 233
Target Start/End: Complemental strand, 33940310 - 33940155
Alignment:
| Q |
78 |
atattcatgcataaatattcttcacaatttatttatcatacatgattaaatttatgcataaagccagaaacaaatatgatatttacgaattaacatattt |
177 |
Q |
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| T |
33940310 |
atattcatgcataaatattcttcacaatttatttatcatacatgtttaaatttatgcataaagccagaaacaaatatgatatttacgaattaacatattt |
33940211 |
T |
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| Q |
178 |
aagatgcaacaagctacaagacttgtattgaaaagtcaagtatgattactgatgtc |
233 |
Q |
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| T |
33940210 |
aagatgcaacaagctacaagacttgtattgaaaagtcaagtatgattactgatgtc |
33940155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 33940363 - 33940296
Alignment:
| Q |
1 |
ttatcatacatgtatatatttaatataaacatgtatggtaaagccagaaacaaatattcatgcataaa |
68 |
Q |
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| T |
33940363 |
ttatcatacatgtatatatttaatataaacatgtatggtaaagccagaaacaaatattcatgcataaa |
33940296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 227
Target Start/End: Complemental strand, 33940470 - 33940404
Alignment:
| Q |
161 |
tacgaattaacatatttaagatgcaacaagctacaagacttgtattgaaaagtcaagtatgattact |
227 |
Q |
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| T |
33940470 |
tacgaattaacatatttaagaagtaacaagctcagagactagtattgaaaagtcaactatgaatact |
33940404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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