View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6708_high_20 (Length: 239)
Name: NF6708_high_20
Description: NF6708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6708_high_20 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 14302599 - 14302361
Alignment:
| Q |
1 |
catctatctccttgatgatgtattcagtgctgttgatgctcaaacaggatcatttatttttaaggtaagcacaaagttacaacttacaagaagtgctaaa |
100 |
Q |
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| T |
14302599 |
catctatctccttgatgatgtattcagtgctgttgatgctcaaacaggatcatttatttttaaggtaagcacaaagttacaacttacaagaagtgctaaa |
14302500 |
T |
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| Q |
101 |
tagcttaattttctagtttttagtgatataacgatgtttctcattttagaaacattatattatatcaatcaaaatgataacgtcagnnnnnnnctaatgc |
200 |
Q |
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| T |
14302499 |
tagcttaattttctagtttttagtgatataacgatgtttctcattttagaaacattatattatattaatcaaaatgataacgtcagtttttttctaatgc |
14302400 |
T |
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| Q |
201 |
agtcacgaatgaagttcctgattctctatttttgttgca |
239 |
Q |
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| T |
14302399 |
agtcacgaatgaagttcctgattctctatttttgttgca |
14302361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 14281215 - 14281085
Alignment:
| Q |
1 |
catctatctccttgatgatgtattcagtgctgttgatgctcaaacaggatcatttatttttaaggtaagcacaaagttacaacttacaagaagtgctaaa |
100 |
Q |
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| T |
14281215 |
catctatctccttgatgatgtattcagtgccgttgatgctcaaacaggatcatttatttttaaggcaagcacaaagttaaaacttacaagaagggctaaa |
14281116 |
T |
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| Q |
101 |
tagcttaattttctagtttttagtgatataa |
131 |
Q |
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| T |
14281115 |
tagcttcattttctagtttttaatgatataa |
14281085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 14319047 - 14318962
Alignment:
| Q |
1 |
catctatctccttgatgatgtattcagtgctgttgatgctcaaacaggatcatttatttttaaggtaagcacaaagttacaactta |
86 |
Q |
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| T |
14319047 |
catctatctccttgatgatgtattcagtgctgttgatgctgaaacaggatcatttatttttaaggtaagcaaaaatttacaactta |
14318962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 179
Target Start/End: Complemental strand, 14318872 - 14318839
Alignment:
| Q |
146 |
ttagaaacattatattatatcaatcaaaatgata |
179 |
Q |
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| T |
14318872 |
ttagaaacaatatattatatcaatcaaaatgata |
14318839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 25884228 - 25884153
Alignment:
| Q |
1 |
catctatctccttgatgatgtattcagtgctgttgatgctcaaacaggatcatttatttttaaggtaagcacaaag |
76 |
Q |
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| T |
25884228 |
catctatctccttgatgatatattcagtgctgttgatgctcaaacaggatcgtttatttttaaagtaagaacaaag |
25884153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 39664834 - 39664797
Alignment:
| Q |
5 |
tatctccttgatgatgtattcagtgctgttgatgctca |
42 |
Q |
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| T |
39664834 |
tatcttcttgatgatgtattcagtgcagttgatgctca |
39664797 |
T |
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