View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6708_high_3 (Length: 543)
Name: NF6708_high_3
Description: NF6708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6708_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 18 - 531
Target Start/End: Original strand, 24104261 - 24104774
Alignment:
| Q |
18 |
aaacacaccttcaatttcatcaccaactcaaacttcacaccatcccttcttcaaaacctcatcacgaccctctctcgtctcaatccaggattcacgcgcc |
117 |
Q |
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| T |
24104261 |
aaacacaccttcaatttcatcaccaactcaaacttcacaccatcccttcttcaaaacctcatcaccaccctctctcgtctcaatccaggattcacgcgcc |
24104360 |
T |
|
| Q |
118 |
gtaacgcgtttgattcactcatcacgcgcctctgtaagcttcgccgcatcgaggatgcacttactgtagtccaatccatgtcgcgtgtggacgacacgga |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
24104361 |
gtaacgcgtttgattcactcatcacgcgcctctgtaagcttcgcctcatcgaggacgcacttactgtagtccaatccatgtcgcgtgtggacgacatgga |
24104460 |
T |
|
| Q |
218 |
taatgaacttaaagcatgtacttttcatccaatactaaattttttaactagagttaagtcactcgaccaggctaaacgcgtggtcgaggtaatgtctgaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24104461 |
taatgaacttaaagcatgtacttttcatccaatactaagttttttaactagagttaagtcactcgaccaggctaaacgcgtggtcgaggtaatgtctgaa |
24104560 |
T |
|
| Q |
318 |
cttggtgtgccgttagatttaacggcacacaattattttcttatgacttattgttatgttggtgatgtggaagcggcggttagggttttgaggacgatgg |
417 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
24104561 |
cttggtgtgccgttagacttaacggcacacaattattttcttatgacttattgttatgttggtgatgtggaagcggcggttacggttttgaggacgatgg |
24104660 |
T |
|
| Q |
418 |
gggaggagggtttttgttttgattcgcgaacttatgacgcgcttgtgttaggcgcgtgtaggaagaggaatgtggttggagctatggtgttggtgaggag |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24104661 |
aggaggagggtttttgttttgattcgcgaacttatgacgcgcttgtgttaggcgcgtgtaggaagaggaatgtggttggagctatggtgttggtgaggag |
24104760 |
T |
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| Q |
518 |
gatggtggatgatg |
531 |
Q |
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|||||||||||||| |
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| T |
24104761 |
gatggtggatgatg |
24104774 |
T |
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