View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6708_high_4 (Length: 470)

Name: NF6708_high_4
Description: NF6708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6708_high_4
NF6708_high_4
[»] chr6 (3 HSPs)
chr6 (1-455)||(1786903-1787361)
chr6 (1-55)||(16477091-16477145)
chr6 (1-55)||(18860049-18860103)
[»] chr5 (2 HSPs)
chr5 (1-55)||(21825765-21825819)
chr5 (1-54)||(25904736-25904789)
[»] chr4 (32 HSPs)
chr4 (1-55)||(12178925-12178979)
chr4 (1-55)||(12184309-12184363)
chr4 (1-55)||(12189644-12189698)
chr4 (4-55)||(12180491-12180542)
chr4 (4-55)||(12182065-12182116)
chr4 (1-55)||(12169483-12169537)
chr4 (1-55)||(12172455-12172509)
chr4 (1-55)||(12180826-12180880)
chr4 (1-55)||(12182405-12182459)
chr4 (1-55)||(12184971-12185025)
chr4 (1-55)||(12186963-12187017)
chr4 (1-55)||(12189300-12189354)
chr4 (4-55)||(12178585-12178636)
chr4 (1-55)||(12173121-12173175)
chr4 (1-55)||(12177345-12177399)
chr4 (1-55)||(12184629-12184683)
chr4 (1-55)||(12185315-12185369)
chr4 (1-55)||(12186620-12186674)
chr4 (1-55)||(12187307-12187361)
chr4 (1-55)||(12188614-12188668)
chr4 (1-55)||(12188957-12189011)
chr4 (1-50)||(12169168-12169217)
chr4 (3-55)||(12182731-12182783)
chr4 (1-52)||(12170072-12170123)
chr4 (4-55)||(12174133-12174184)
chr4 (4-55)||(12183968-12184019)
chr4 (2-52)||(12170661-12170711)
chr4 (1-55)||(12174471-12174525)
chr4 (3-52)||(12169779-12169828)
chr4 (7-55)||(12172786-12172834)
chr4 (3-55)||(12174798-12174850)
chr4 (3-55)||(12179251-12179303)
[»] chr2 (48 HSPs)
chr2 (1-55)||(24621698-24621752)
chr2 (1-55)||(24622017-24622071)
chr2 (1-55)||(24622336-24622390)
chr2 (1-55)||(24622620-24622674)
chr2 (1-55)||(24622904-24622958)
chr2 (1-55)||(24623507-24623561)
chr2 (1-55)||(24623826-24623880)
chr2 (1-55)||(24624419-24624473)
chr2 (1-55)||(24624738-24624792)
chr2 (1-55)||(24625022-24625076)
chr2 (1-55)||(24625341-24625395)
chr2 (1-55)||(24626914-24626968)
chr2 (1-55)||(24631400-24631454)
chr2 (1-55)||(24631719-24631773)
chr2 (1-55)||(24632003-24632057)
chr2 (1-55)||(24632287-24632341)
chr2 (1-55)||(24632606-24632660)
chr2 (1-55)||(24632890-24632944)
chr2 (1-55)||(24633174-24633228)
chr2 (1-55)||(24633493-24633547)
chr2 (1-55)||(24633812-24633866)
chr2 (1-55)||(24634096-24634150)
chr2 (1-55)||(24634699-24634753)
chr2 (1-55)||(24638778-24638832)
chr2 (1-55)||(24639097-24639151)
chr2 (1-55)||(24623223-24623277)
chr2 (1-55)||(24627233-24627287)
chr2 (1-55)||(24627517-24627571)
chr2 (1-55)||(24631116-24631170)
chr2 (1-55)||(24625983-24626037)
chr2 (1-55)||(24634415-24634469)
chr2 (1-55)||(24638459-24638513)
chr2 (1-49)||(24626303-24626351)
chr2 (1-55)||(3348065-3348119)
chr2 (1-49)||(24637842-24637890)
chr2 (1-55)||(24619617-24619674)
chr2 (1-55)||(24620765-24620822)
chr2 (1-55)||(24621087-24621145)
chr2 (1-55)||(24621410-24621468)
chr2 (1-55)||(24625660-24625718)
chr2 (1-55)||(24626626-24626684)
chr2 (1-55)||(24635570-24635628)
chr2 (1-55)||(24636271-24636329)
chr2 (1-55)||(24636594-24636652)
chr2 (1-55)||(24637519-24637577)
chr2 (1-55)||(24639446-24639504)
chr2 (1-55)||(24639769-24639827)
chr2 (1-55)||(24640092-24640150)
[»] scaffold1024 (1 HSPs)
scaffold1024 (1-55)||(53-107)
[»] chr1 (2 HSPs)
chr1 (1-54)||(2557895-2557948)
chr1 (1-33)||(12891613-12891645)
[»] chr3 (3 HSPs)
chr3 (1-55)||(14903158-14903212)
chr3 (4-55)||(16990093-16990144)
chr3 (1-49)||(30729419-30729467)


Alignment Details
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 455
Target Start/End: Original strand, 1786903 - 1787361
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaagttagtttgaattaaaaatataaagacaatatattcggaaaatact 100  Q
    |||||||||| ||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1786903 tgcaacacaaagacttaccagaaggtcacccatcctaatactactctcgtccaagttagtttgaattaaaaatgtaaagacaatatattcggaaaatact 1787002  T
Q  101 taggtgtaactatatttttctttcctnnnnnnntgtactttattcaattcnnnnnnnnnnnnnnnnnnnnncaaatatgtatttgtgattaaatggtgta 200  Q
    ||||| ||||||||||||||||||||       |||||||||||||||||                     |||||||||||||||||||||||||||||    
T  1787003 taggtataactatatttttctttcctaaaaaaatgtactttattcaattcttttattttttataactttttcaaatatgtatttgtgattaaatggtgta 1787102  T
Q  201 tgtatcaaaatgtttgtgaccacataagacttgtatatgtgactaaatggtgtatctaaatgtttgtgaccacacaagactagggttcctgcaattagga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1787103 tgtatcaaaatgtttgtgaccacataagacttgtatatgtgactaaatgatgtatctaaatgtttgtgaccatacaagactagggttcctgcaattagga 1787202  T
Q  301 -gaacccacattcacatagtctgatatcggaaatcgtctaatcttaattgaatggtcatcttgatcg---aatcaagattatcctgaatgcgtgactgcg 396  Q
     |||||||||||||| ||||||||||| || |||||||| ||||| |||||||||||||||||||||   ||||||||||||||||||||||||||||||    
T  1787203 ggaacccacattcacgtagtctgatattgggaatcgtctgatcttgattgaatggtcatcttgatcgaacaatcaagattatcctgaatgcgtgactgcg 1787302  T
Q  397 tacttttgttgagcgtagtaaatctagtttgtatagatacaaagaaaatagactgatgt 455  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||    
T  1787303 tacttttgttgaccgtaataaatctagtttgtatagatacaaagaaaatagagtgatgt 1787361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 16477091 - 16477145
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||    
T  16477091 tgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 16477145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 18860103 - 18860049
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    |||||||||||||||| |||| ||| ||||||||||| |||||||||||||||||    
T  18860103 tgcaacacaaggactttccaggaggtcacccatcctagtactactctcgcccaag 18860049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 21825819 - 21825765
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||    
T  21825819 tgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 21825765  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 25904736 - 25904789
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaa 54  Q
    |||||||||||||||| ||| |||| || ||||| |||||||||||||| ||||    
T  25904736 tgcaacacaaggactttccaaaaggtcatccatcttaatactactctcgtccaa 25904789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 12178925 - 12178979
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||    
T  12178925 tgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 12178979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 12184309 - 12184363
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||    
T  12184309 tgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 12184363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 12189644 - 12189698
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||    
T  12189644 tgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 12189698  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 12180491 - 12180542
Alignment:
Q  4 aacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    |||||||||||||||||| ||| ||||||||||| |||||||||||||||||    
T  12180491 aacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 12180542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 12182065 - 12182116
Alignment:
Q  4 aacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    |||||||||||||||||| ||| ||||||||||| |||||||||||||||||    
T  12182065 aacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 12182116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 12169483 - 12169537
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    |||||||||||||||||||| |||| |||||||||||  ||||||||||||||||    
T  12169483 tgcaacacaaggacttcccaaaaggtcacccatcctagaactactctcgcccaag 12169537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 12172455 - 12172509
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||| ||||||||||||||| ||| ||||||||||| |||||||||||||||||    
T  12172455 tgcaatacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 12172509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 12180826 - 12180880
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    |||||||||||||||| |||| ||| ||||||||||| |||||||||||||||||    
T  12180826 tgcaacacaaggactttccaggaggtcacccatcctagtactactctcgcccaag 12180880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 12182405 - 12182459
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||||||||||||||||||| ||| ||||||||||| | |||||||||||||||    
T  12182405 tgcaacacaaggacttcccaggaggtcacccatcctagtcctactctcgcccaag 12182459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 12184971 - 12185025
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||||| |||||| |||||| ||||||||||||||| |||||||||||||||||    
T  12184971 tgcaacaaaaggacctcccaggaggccacccatcctagtactactctcgcccaag 12185025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 12186963 - 12187017
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||||| |||||| |||||| ||||||||||||||| |||||||||||||||||    
T  12186963 tgcaacaaaaggacctcccaggaggccacccatcctagtactactctcgcccaag 12187017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 12189300 - 12189354
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||||||||||||||||||| ||| || |||||||| |||||||||||||||||    
T  12189300 tgcaacacaaggacttcccaggaggtcatccatcctagtactactctcgcccaag 12189354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 12178585 - 12178636
Alignment:
Q  4 aacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    |||||||||||||||||| ||| |||||||| || |||||||||||||||||    
T  12178585 aacacaaggacttcccaggaggacacccatcatagtactactctcgcccaag 12178636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 12173121 - 12173175
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||| |||||||||||| || ||| ||||||||||| |||||||||||||||||    
T  12173121 tgcaatacaaggacttcctaggaggtcacccatcctagtactactctcgcccaag 12173175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 12177345 - 12177399
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||| |||||||||||||||  || ||||||||||| |||||||||||||||||    
T  12177345 tgcaatacaaggacttcccaggtggtcacccatcctagtactactctcgcccaag 12177399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 12184629 - 12184683
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    |||||||||||||||| |||| ||| ||||||||||  |||||||||||||||||    
T  12184629 tgcaacacaaggactttccaggaggtcacccatcctggtactactctcgcccaag 12184683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 12185315 - 12185369
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    |||||||||||||||||| || ||| ||||||||||  |||||||||||||||||    
T  12185315 tgcaacacaaggacttcctaggaggacacccatccttgtactactctcgcccaag 12185369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 12186620 - 12186674
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||||||||||||||| ||| ||| ||||||||||  |||||||||||||||||    
T  12186620 tgcaacacaaggacttctcaggaggacacccatcctcgtactactctcgcccaag 12186674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 12187307 - 12187361
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    |||||||||||||||||| || ||| ||||||||||  |||||||||||||||||    
T  12187307 tgcaacacaaggacttcctaggaggacacccatccttgtactactctcgcccaag 12187361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 12188614 - 12188668
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||||||||||||||| ||| ||| ||||||||||  |||||||||||||||||    
T  12188614 tgcaacacaaggacttctcaggaggacacccatcctcgtactactctcgcccaag 12188668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 12188957 - 12189011
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||||||||| ||||||||| ||| |||||||||||  ||||||||||||||||    
T  12188957 tgcaacacaagaacttcccaggaggtcacccatcctagaactactctcgcccaag 12189011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 12169168 - 12169217
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgc 50  Q
    ||||| ||||||||||||||| ||| ||||||||||| ||||||||||||    
T  12169168 tgcaatacaaggacttcccaggaggtcacccatcctagtactactctcgc 12169217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 12182731 - 12182783
Alignment:
Q  3 caacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||||||||||||||||| ||| || |||||| | |||||||||||||||||    
T  12182731 caacacaaggacttcccaggaggtcatccatccaagtactactctcgcccaag 12182783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 12170072 - 12170123
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgccc 52  Q
    ||||||||||||||||||||  ||| |||||||| || ||||||||||||||    
T  12170072 tgcaacacaaggacttcccaagaggtcacccatcatagtactactctcgccc 12170123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 12174133 - 12174184
Alignment:
Q  4 aacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||||||||||| |||| ||| || |||||||| |||||||||||||||||    
T  12174133 aacacaaggactttccaggaggtcatccatcctagtactactctcgcccaag 12174184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 12183968 - 12184019
Alignment:
Q  4 aacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||||||||||||| || ||| ||||||||||| ||||||||||| |||||    
T  12183968 aacacaaggacttccaaggaggtcacccatcctagtactactctcgtccaag 12184019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 12170661 - 12170711
Alignment:
Q  2 gcaacacaaggacttcccagaaggccacccatcctaatactactctcgccc 52  Q
    ||||||||| |||||||||| ||| |||||||| || ||||||||||||||    
T  12170661 gcaacacaatgacttcccaggaggtcacccatcatagtactactctcgccc 12170711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 12174471 - 12174525
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||| |||||||||||| || | | ||||||||||| |||||||||||||||||    
T  12174471 tgcaatacaaggacttcctaggacgtcacccatcctagtactactctcgcccaag 12174525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 12169779 - 12169828
Alignment:
Q  3 caacacaaggacttcccagaaggccacccatcctaatactactctcgccc 52  Q
    |||||||| |||||||||| ||| |||||||| || ||||||||||||||    
T  12169779 caacacaatgacttcccaggaggtcacccatcatagtactactctcgccc 12169828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 12172786 - 12172834
Alignment:
Q  7 acaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||||||| ||||| ||| || |||||||| |||||||||||||||||    
T  12172786 acaaggactacccaggaggtcatccatcctagtactactctcgcccaag 12172834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 12174798 - 12174850
Alignment:
Q  3 caacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||||||||||| ||||| ||  || |||||||| |||||||||||||||||    
T  12174798 caacacaaggactacccaggagatcatccatcctagtactactctcgcccaag 12174850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 12179251 - 12179303
Alignment:
Q  3 caacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||||||||||||||||| ||| || |||||  | |||||||||||||||||    
T  12179251 caacacaaggacttcccaggaggtcatccatcaaagtactactctcgcccaag 12179303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 48)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24621698 - 24621752
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||    
T  24621698 tgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 24621752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24622017 - 24622071
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||    
T  24622017 tgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 24622071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24622336 - 24622390
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||    
T  24622336 tgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 24622390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24622620 - 24622674
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||    
T  24622620 tgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 24622674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24622904 - 24622958
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||    
T  24622904 tgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 24622958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24623507 - 24623561
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||    
T  24623507 tgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 24623561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24623826 - 24623880
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||    
T  24623826 tgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 24623880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24624419 - 24624473
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||    
T  24624419 tgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 24624473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24624738 - 24624792
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||    
T  24624738 tgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 24624792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24625022 - 24625076
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||    
T  24625022 tgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 24625076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24625341 - 24625395
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||    
T  24625341 tgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 24625395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24626914 - 24626968
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||    
T  24626914 tgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 24626968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24631400 - 24631454
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||    
T  24631400 tgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 24631454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24631719 - 24631773
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||    
T  24631719 tgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 24631773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24632003 - 24632057
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||    
T  24632003 tgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 24632057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24632287 - 24632341
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||    
T  24632287 tgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 24632341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24632606 - 24632660
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||    
T  24632606 tgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 24632660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24632890 - 24632944
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||    
T  24632890 tgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 24632944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24633174 - 24633228
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||    
T  24633174 tgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 24633228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24633493 - 24633547
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||    
T  24633493 tgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 24633547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24633812 - 24633866
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||    
T  24633812 tgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 24633866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24634096 - 24634150
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||    
T  24634096 tgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 24634150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24634699 - 24634753
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||    
T  24634699 tgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 24634753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24638778 - 24638832
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||    
T  24638778 tgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 24638832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24639097 - 24639151
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||    
T  24639097 tgcaacacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 24639151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24623223 - 24623277
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||||||||||||||||||| ||| |||||||||||  ||||||||||||||||    
T  24623223 tgcaacacaaggacttcccaggaggtcacccatcctagnactactctcgcccaag 24623277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24627233 - 24627287
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||||||||||||||||||| ||| |||||||||||  ||||||||||||||||    
T  24627233 tgcaacacaaggacttcccaggaggtcacccatcctagnactactctcgcccaag 24627287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24627517 - 24627571
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    |||||||||| |||||||||| ||| ||||||||||| |||||||||||||||||    
T  24627517 tgcaacacaangacttcccaggaggtcacccatcctagtactactctcgcccaag 24627571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24631116 - 24631170
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||||||||||||||||||  ||| ||||||||||| |||||||||||||||||    
T  24631116 tgcaacacaaggacttcccangaggtcacccatcctagtactactctcgcccaag 24631170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24625983 - 24626037
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||| ||||||||||||||| ||| ||||||||||| |||||||||||||||||    
T  24625983 tgcaaaacaaggacttcccaggaggtcacccatcctagtactactctcgcccaag 24626037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24634415 - 24634469
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||||||||||||||||||| ||| |||||||||||  ||||||||||||||||    
T  24634415 tgcaacacaaggacttcccaggaggtcacccatcctagcactactctcgcccaag 24634469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24638459 - 24638513
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||||||||||||||||||| ||| |||||||||||  ||||||||||||||||    
T  24638459 tgcaacacaaggacttcccaggaggtcacccatcctagcactactctcgcccaag 24638513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 24626303 - 24626351
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcg 49  Q
    ||||||||||||||||||||| ||| ||||||||||| |||||||||||    
T  24626303 tgcaacacaaggacttcccaggaggtcacccatcctagtactactctcg 24626351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 3348065 - 3348119
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    |||||||||||||||||| || ||| ||||||||||| ||||||||||| |||||    
T  3348065 tgcaacacaaggacttcctaggaggtcacccatcctagtactactctcgtccaag 3348119  T

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Target: chr2; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 24637842 - 24637890
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcg 49  Q
    ||||| ||||||||||||||| ||| ||||||||||| |||||||||||    
T  24637842 tgcaaaacaaggacttcccaggaggtcacccatcctagtactactctcg 24637890  T

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Target: chr2; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24619617 - 24619674
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatc---ctaatactactctcgcccaag 55  Q
    ||||||||||||||||||||| ||| ||||||||   ||| |||||||||||||||||    
T  24619617 tgcaacacaaggacttcccaggaggtcacccatccanctagtactactctcgcccaag 24619674  T

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Target: chr2; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24620765 - 24620822
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatc---ctaatactactctcgcccaag 55  Q
    ||||||||||||||||||||| ||| ||||||||   ||| |||||||||||||||||    
T  24620765 tgcaacacaaggacttcccaggaggtcacccatccanctagtactactctcgcccaag 24620822  T

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Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24621087 - 24621145
Alignment:
Q  1 tgcaacacaaggacttcccagaagg----ccacccatcctaatactactctcgcccaag 55  Q
    ||||||||||||||||||||| |||    ||| |||||||| |||||||||||||||||    
T  24621087 tgcaacacaaggacttcccaggaggtcacccatccatcctagtactactctcgcccaag 24621145  T

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Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24621410 - 24621468
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccat----cctaatactactctcgcccaag 55  Q
    ||||||||||||||||||||| ||| |||||||    |||| |||||||||||||||||    
T  24621410 tgcaacacaaggacttcccaggaggtcacccatccnncctagtactactctcgcccaag 24621468  T

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Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24625660 - 24625718
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccat----cctaatactactctcgcccaag 55  Q
    ||||||||||||||||||||| ||| |||||||    |||| |||||||||||||||||    
T  24625660 tgcaacacaaggacttcccaggaggtcacccatccancctagtactactctcgcccaag 24625718  T

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Target: chr2; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24626626 - 24626684
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaa----tactactctcgcccaag 55  Q
    ||||||||||||||||||||| ||| |||||||||||     |||||||||||||||||    
T  24626626 tgcaacacaaggacttcccaggaggtcacccatcctacctagtactactctcgcccaag 24626684  T

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Target: chr2; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24635570 - 24635628
Alignment:
Q  1 tgcaacacaaggacttcccagaagg----ccacccatcctaatactactctcgcccaag 55  Q
    ||||||||||||||||||||| |||    ||| |||||||| |||||||||||||||||    
T  24635570 tgcaacacaaggacttcccaggaggtcacccatccatcctagtactactctcgcccaag 24635628  T

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Target: chr2; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24636271 - 24636329
Alignment:
Q  1 tgcaacacaaggacttcccagaagg----ccacccatcctaatactactctcgcccaag 55  Q
    ||||||||||||||||||||| |||    ||| |||||||| |||||||||||||||||    
T  24636271 tgcaacacaaggacttcccaggaggtcacccatccatcctagtactactctcgcccaag 24636329  T

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Target: chr2; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24636594 - 24636652
Alignment:
Q  1 tgcaacacaaggacttcccagaagg----ccacccatcctaatactactctcgcccaag 55  Q
    ||||||||||||||||||||| |||    ||| |||||||| |||||||||||||||||    
T  24636594 tgcaacacaaggacttcccaggaggtcacccatccatcctagtactactctcgcccaag 24636652  T

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Target: chr2; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24637519 - 24637577
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaa----tactactctcgcccaag 55  Q
    ||||||||||||||||||||| ||| |||||||||||     |||||||||||||||||    
T  24637519 tgcaacacaaggacttcccaggaggtcacccatcctacctagtactactctcgcccaag 24637577  T

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Target: chr2; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24639446 - 24639504
Alignment:
Q  1 tgcaacacaaggacttcccagaagg----ccacccatcctaatactactctcgcccaag 55  Q
    ||||||||||||||||||||| |||    ||| |||||||| |||||||||||||||||    
T  24639446 tgcaacacaaggacttcccaggaggtcacccatccatcctagtactactctcgcccaag 24639504  T

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Target: chr2; HSP #47
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24639769 - 24639827
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccat----cctaatactactctcgcccaag 55  Q
    ||||||||||||||||||||| ||| |||||||    |||| |||||||||||||||||    
T  24639769 tgcaacacaaggacttcccaggaggtcacccatccnncctagtactactctcgcccaag 24639827  T

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Target: chr2; HSP #48
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 24640092 - 24640150
Alignment:
Q  1 tgcaacacaaggacttcccagaagg----ccacccatcctaatactactctcgcccaag 55  Q
    ||||||||||||||||||||| |||    ||| |||||||| |||||||||||||||||    
T  24640092 tgcaacacaaggacttcccaggaggtcacccatccatcctagtactactctcgcccaag 24640150  T

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Target: scaffold1024 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold1024
Description:

Target: scaffold1024; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 107 - 53
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||||||| ||||||||||| ||| ||||||||||| |||||||||||||||||    
T  107 tgcaacacacggacttcccaggaggtcacccatcctagtactactctcgcccaag 53  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 2557948 - 2557895
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaa 54  Q
    ||||||||||||||||||||| ||| ||||||||||| ||||||||||| ||||    
T  2557948 tgcaacacaaggacttcccaggaggtcacccatcctagtactactctcggccaa 2557895  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 12891613 - 12891645
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccat 33  Q
    ||||||||||||||||||||||||| |||||||    
T  12891613 tgcaacacaaggacttcccagaaggtcacccat 12891645  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 14903212 - 14903158
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    ||||||||||||||||  ||| ||| ||||||||||| |||||||||||||||||    
T  14903212 tgcaacacaaggacttttcaggaggtcacccatcctagtactactctcgcccaag 14903158  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 16990144 - 16990093
Alignment:
Q  4 aacacaaggacttcccagaaggccacccatcctaatactactctcgcccaag 55  Q
    |||||||||||||||||  ||| ||| ||||||| |||||||||||||||||    
T  16990144 aacacaaggacttcccaataggtcactcatcctagtactactctcgcccaag 16990093  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 30729419 - 30729467
Alignment:
Q  1 tgcaacacaaggacttcccagaaggccacccatcctaatactactctcg 49  Q
    |||||||||| |||||  ||||||| ||||||||||||| |||||||||    
T  30729419 tgcaacacaatgacttttcagaaggtcacccatcctaatgctactctcg 30729467  T

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