View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6708_high_7 (Length: 409)
Name: NF6708_high_7
Description: NF6708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6708_high_7 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 7 - 409
Target Start/End: Complemental strand, 28908388 - 28907986
Alignment:
| Q |
7 |
atggacatcactccatggctagctgcaggaggccagctgattgcttcccgtttcgagcagaatgatgttagaagtttattacctgtagaaagtgaggtaa |
106 |
Q |
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| T |
28908388 |
atggccatcactccatggctagctgcaggaggccagctgattgcttcccgtttcgagcagaatgatgttagaagtttattacctgtagaaagtgaggtaa |
28908289 |
T |
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| Q |
107 |
aatctcttaaattggttgcagccctgtaacttcgttagttgcacatggtcataaatttttatccttagaatctatgaagcacctactctgacactgacac |
206 |
Q |
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| T |
28908288 |
aatctcttaaattggttgcagccctgtaacttcgttagttgcacatggtcataaatttttatccttagaatctatgaagcacctactctgacactgacac |
28908189 |
T |
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| Q |
207 |
ctgtagttttgccatttacaattttttatttggagttgacgtacaaacttagtagttactgaattttggatgtcatcttttacagacagatgatctgcaa |
306 |
Q |
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| T |
28908188 |
ctgtagttttgccatttacatttttttatttggagttgacgtacaaacttagtagttactgaattttggatgtcatcttttacagacagatgatctgcaa |
28908089 |
T |
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| Q |
307 |
gatcatatcattatttgtggatttggacgagttggccaggtaaattctctatattttggtttgcttagttagtttacataagtgtgctggaatttacctt |
406 |
Q |
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| T |
28908088 |
gatcatatcattatttgtggatttggacgagttggccaggtaaattctctatattttggtttgcttagttagtttacataaatgtgctggaatttacctt |
28907989 |
T |
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| Q |
407 |
tgt |
409 |
Q |
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| T |
28907988 |
tgt |
28907986 |
T |
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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 11847812 - 11847897
Alignment:
| Q |
19 |
ccatggctagctgcaggaggccagctgattgcttcccgtttcgagcagaatgatgttagaagtttattacctgtagaaagtgaggt |
104 |
Q |
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| T |
11847812 |
ccatggctaggcgaaggaggccagctgattgcttcccgttttgagcaacatgatgttcgaagcttactacctgtagaaagtgaggt |
11847897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 282 - 347
Target Start/End: Original strand, 11848163 - 11848228
Alignment:
| Q |
282 |
tcttttacagacagatgatctgcaagatcatatcattatttgtggatttggacgagttggccaggt |
347 |
Q |
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| T |
11848163 |
tctttttcagacagacgatctgcgtgatcatatcattatttgtggatttgggcgagttggccaggt |
11848228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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