View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6708_low_10 (Length: 459)
Name: NF6708_low_10
Description: NF6708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6708_low_10 |
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| [»] chr3 (1 HSPs) |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 12 - 459
Target Start/End: Original strand, 20554794 - 20555241
Alignment:
| Q |
12 |
acatcacaaacttcttttttaagtgtgatagccatggtgtcatttacatgcacaagctcaaaaaattgttcttgtatgcaaccatgtttatccacaaacc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
20554794 |
acatcacaaacttcttttttaagtgtgatagccatggtgtcatttacatgcacaagctcaaaaaatcgttcttgtatgcaaccatgtttatccacaaacc |
20554893 |
T |
|
| Q |
112 |
tcaaaataatagccatttgctccctaagagattcatcacgcgattcgtcaaaaattatgcaaaatttagaatctccaatctcttcccgaatgtagtgttt |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20554894 |
tcaaaataatagccatttgctccctaagagattcatcacgcgattcgtcaacaattatgcaaaatttagaatctccaatctcttcccgaatgtagtgttt |
20554993 |
T |
|
| Q |
212 |
cactttacaagacatgatttgcaaaagttccttttgaattgcatgagatgtatactttctgttgtatggagcattctccagcactactttagcaagttca |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||| |
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| T |
20554994 |
cactttacaagacatgatttgcaaaagttccttttgaattgcatgagatgtatactttccgttatatggagcattctctagcactactttagcaagttca |
20555093 |
T |
|
| Q |
312 |
tcattgtatgatgctaacagtttaaccatttcaagaaagctacctctattttttgaactagatttttcatcacggcctctaaaagcacaagcttgaaaag |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||| ||| | |||||||||||||||| |||||||| |
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| T |
20555094 |
tcattgtatgatgctaacagtttaaccatttcaagaaatttacctctattttttgaagtaggtttttcgtcatgtcctctaaaagcacaagattgaaaag |
20555193 |
T |
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| Q |
412 |
tgagccaacgaactgaatcgatagagcacctgagacgaagtctattat |
459 |
Q |
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| T |
20555194 |
tgagccaacgaactgaatcgatagagcacctgagacgaagtctattat |
20555241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 12 - 459
Target Start/End: Original strand, 1196551 - 1196998
Alignment:
| Q |
12 |
acatcacaaacttcttttttaagtgtgatagccatggtgtcatttacatgcacaagctcaaaaaattgttcttgtatgcaaccatgtttatccacaaacc |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1196551 |
acatcacaaacttcttttttaagtgtgatagccatggtgtcatctacatgcacaagctcaaaaaatcgttcttgtatgcaaccatgtttatccacaaacc |
1196650 |
T |
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| Q |
112 |
tcaaaataatagccatttgctccctaagagattcatcacgcgattcgtcaaaaattatgcaaaatttagaatctccaatctcttcccgaatgtagtgttt |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1196651 |
tcaaaataatagccatttgctccctaagagattcatcacacgatttgtcaacaattatgcaaaatttagaatctccaatctcttcccgaatgtagtgttt |
1196750 |
T |
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| Q |
212 |
cactttacaagacatgatttgcaaaagttccttttgaattgcatgagatgtatactttctgttgtatggagcattctccagcactactttagcaagttca |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||| |
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| T |
1196751 |
cactttacaagacatgatttgcaaaagttccttttgaactgcatgagatgtatactttccgttatatggagcattctctagcactactttagcaagttca |
1196850 |
T |
|
| Q |
312 |
tcattgtatgatgctaacagtttaaccatttcaagaaagctacctctattttttgaactagatttttcatcacggcctctaaaagcacaagcttgaaaag |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||| |
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| T |
1196851 |
tcattgtatgatgctaacagtttaaccatttcaagaaagttacctctattttttgaactaggtttttcgtcatggcctctaaaagcacaagcttgaaaag |
1196950 |
T |
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| Q |
412 |
tgagccaacgaactgaatcgatagagcacctgagacgaagtctattat |
459 |
Q |
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| T |
1196951 |
tgaggcaacaaactgaatcaatagagcacctgagacgaagtctattat |
1196998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 12 - 459
Target Start/End: Original strand, 1286879 - 1287324
Alignment:
| Q |
12 |
acatcacaaacttcttttttaagtgtgatagccatggtgtcatttacatgcacaagctcaaaaaattgttcttgtatgcaaccatgtttatccacaaacc |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1286879 |
acatcacaaacttcttttttaagtgtgatagccatggtgtcatctacatgcacaagctcaaaaaatcgttcttgtatgcaaccatgtttatccacaaacc |
1286978 |
T |
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| Q |
112 |
tcaaaataatagccatttgctccctaagagattcatcacgcgattcgtcaaaaattatgcaaaatttagaatctccaatctcttcccgaatgtagtgttt |
211 |
Q |
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|||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
1286979 |
tcaa--taatagccatttgctccctaagagattcatcacacgattcgtcaacaattatgaaaaatttagaatctccaatctcttcccgaatgtagtgttt |
1287076 |
T |
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| Q |
212 |
cactttacaagacatgatttgcaaaagttccttttgaattgcatgagatgtatactttctgttgtatggagcattctccagcactactttagcaagttca |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||| |
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| T |
1287077 |
cactttacaagacatgatttgcaaaagttccttttgaactgcatgagatgtatactttccgttatatggagcattctctagcactactttagcaagttca |
1287176 |
T |
|
| Q |
312 |
tcattgtatgatgctaacagtttaaccatttcaagaaagctacctctattttttgaactagatttttcatcacggcctctaaaagcacaagcttgaaaag |
411 |
Q |
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||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||| |||||| ||| ||||||||||||||||||||||||||| |
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| T |
1287177 |
tcattgtatgatgctaacaatttaaccatttcaagaaagttacctctattctttgaactaggtttttcgtcatggcctctaaaagcacaagcttgaaaag |
1287276 |
T |
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| Q |
412 |
tgagccaacgaactgaatcgatagagcacctgagacgaagtctattat |
459 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1287277 |
tgaggcaacgaactgaatcgatagagcacctgagacgaagtatattat |
1287324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 228 - 349
Target Start/End: Complemental strand, 5087188 - 5087067
Alignment:
| Q |
228 |
atttgcaaaagttccttttgaattgcatgagatgtatactttctgttgtatggagcattctccagcactactttagcaagttcatcattgtatgatgcta |
327 |
Q |
| |
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||||||||||| || ||||||||| ||| || |||||||| | || | ||||||||| |||| ||| ||||| |||| |||||||||||| ||||||| |
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| T |
5087188 |
atttgcaaaagctctttttgaatttgatgtgaagtatacttgcatttttctggagcattttccaacacaacttttgcaacttcatcattgtaagatgcta |
5087089 |
T |
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| Q |
328 |
acagtttaaccatttcaagaaa |
349 |
Q |
| |
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| T |
5087088 |
aaagttttagcagttcaagaaa |
5087067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 223 - 334
Target Start/End: Complemental strand, 27178065 - 27177954
Alignment:
| Q |
223 |
acatgatttgcaaaagttccttttgaattgcatgagatgtatactttctgttgtatggagcattctccagcactactttagcaagttcatcattgtatga |
322 |
Q |
| |
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|||||||||||| || || ||||||| || ||||||| |||||||| ||||||| | |||||| | ||||||||| ||||||||| ||||||| || |
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| T |
27178065 |
acatgatttgcataatttgcttttgagtttcatgagaaatatactttgcattgtatgcaacattctttatcactacttttgcaagttcaacattgtaaga |
27177966 |
T |
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| Q |
323 |
tgctaacagttt |
334 |
Q |
| |
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|||||| ||||| |
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| T |
27177965 |
tgctaagagttt |
27177954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 88 - 169
Target Start/End: Complemental strand, 27178205 - 27178124
Alignment:
| Q |
88 |
tgcaaccatgtttatccacaaacctcaaaataatagccatttgctccctaagagattcatcacgcgattcgtcaaaaattat |
169 |
Q |
| |
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||||||||| ||||||||||||| |||||||| ||| ||| ||||| || || |||||||||| ||||| | ||||||||| |
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| T |
27178205 |
tgcaaccatttttatccacaaacatcaaaatagtagacatatgctctcttagggattcatcacaagattcatgaaaaattat |
27178124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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