View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6708_low_12 (Length: 426)
Name: NF6708_low_12
Description: NF6708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6708_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 18092750 - 18092947
Alignment:
| Q |
1 |
caagacagcaaagatctcgtatctgtgcataatttttcagttcatcattgtgtccgtgagggaaaccaatgcgcggactatttggccaagttaggagctt |
100 |
Q |
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| T |
18092750 |
caagacatcaaagatctcttatctgtgcataatttttcagttcatcattgtctccgtgagggaaaccaatgcgcggactatttggccaagttaggagctt |
18092849 |
T |
|
| Q |
101 |
catctaatgaagagtgcttattccacgccacaccacctcatgagcttttggatttgattcgctttgatgccataggaactctgtttcctagagcatag |
198 |
Q |
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| T |
18092850 |
catctaatgaagagtgcttattccacgccacaccacctcatgagcttttggatttgattcgctttgatgccataggaactctgtttcctagagcatag |
18092947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 37 - 194
Target Start/End: Original strand, 31468840 - 31468997
Alignment:
| Q |
37 |
tcagttcatcattgtgtccgtgagggaaaccaatgcgcggactatttggccaagttaggagcttcatctaatgaagagtgcttattccacgccacaccac |
136 |
Q |
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||||||||||||||| ||||||| ||||| ||||| ||||| || ||||| || || ||||||||||| ||||||||||| ||| | || ||| | | | |
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| T |
31468840 |
tcagttcatcattgtctccgtgaaggaaatcaatgtgcggattacttggcaaaattgggagcttcatcgaatgaagagtgtttagtacatgcctccgccc |
31468939 |
T |
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| Q |
137 |
ctcatgagcttttggatttgattcgctttgatgccataggaactctgtttcctagagc |
194 |
Q |
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|||| || ||| | | |||| ||| | ||||| ||||||||||||||||||||||| |
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| T |
31468940 |
ctcaagaacttcttgttttgcttcagatggatgcaataggaactctgtttcctagagc |
31468997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 154; Significance: 2e-81; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 37152424 - 37152621
Alignment:
| Q |
1 |
caagacagcaaagatctcgtatctgtgcataatttttcagttcatcattgtgtccgtgagggaaaccaatgcgcggactatttggccaagttaggagctt |
100 |
Q |
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||||||| ||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37152424 |
caagacataaaagacctcttatctgtgcataatttttcagttcatcattgtctccgtgagggaaaccaatgcgcggactatttggccaagttaggagctt |
37152523 |
T |
|
| Q |
101 |
catctaatgaagagtgcttattccacgccacaccacctcatgagcttttggatttgattcgctttgatgccataggaactctgtttcctagagcatag |
198 |
Q |
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|||||||| || |||||||||| ||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
37152524 |
catctaattaaaagtgcttatttcacgccacaccacctcaagagctcttggatttaattcgctttgatgccataggaactctgtttcctagagcatag |
37152621 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 21789221 - 21789418
Alignment:
| Q |
1 |
caagacagcaaagatctcgtatctgtgcataatttttcagttcatcattgtgtccgtgagggaaaccaatgcgcggactatttggccaagttaggagctt |
100 |
Q |
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||||||| ||||||||| ||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||| || ||||||||||| ||||||| |
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| T |
21789221 |
caagacataaaagatctcttatctgtgcataatttttccgttcatcattgtctccgtgaaggaaaccaatgcgcggattacttggccaagttgggagctt |
21789320 |
T |
|
| Q |
101 |
catctaatgaagagtgcttattccacgccacaccacctcatgagcttttggatttgattcgctttgatgccataggaactctgtttcctagagcatag |
198 |
Q |
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|||| ||||||| ||||||||| || ||||| || |||||||||||| ||||||| |||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
21789321 |
catcaaatgaagtgtgcttatttcatgccaccccccctcatgagcttctggatttaattcgctttgatgctataggaactctatttcctagagcatag |
21789418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 39464228 - 39464425
Alignment:
| Q |
1 |
caagacagcaaagatctcgtatctgtgcataatttttcagttcatcattgtgtccgtgagggaaaccaatgcgcggactatttggccaagttaggagctt |
100 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||| || ||||| ||||| ||||||| |
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| T |
39464228 |
caagacataaaagatctcttatctgtgcataatttttccgttcatcattgtctccgtgaaggaaaccaatgcgcggattacttggctaagttgggagctt |
39464327 |
T |
|
| Q |
101 |
catctaatgaagagtgcttattccacgccacaccacctcatgagcttttggatttgattcgctttgatgccataggaactctgtttcctagagcatag |
198 |
Q |
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|||| ||||||||||||||||| || ||||| |||||| | |||||| ||||||| |||||| ||||||| ||||||||||| ||||||||||||||| |
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| T |
39464328 |
catcaaatgaagagtgcttatttcatgccaccccacctaaagagcttatggatttaattcgccttgatgctataggaactctatttcctagagcatag |
39464425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 10 - 198
Target Start/End: Complemental strand, 15462698 - 15462510
Alignment:
| Q |
10 |
aaagatctcgtatctgtgcataatttttcagttcatcattgtgtccgtgagggaaaccaatgcgcggactatttggccaagttaggagcttcatctaatg |
109 |
Q |
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||||||||| |||||| |||||||||||| |||||||||||| ||||||| ||||| |||||||||||||| ||| ||||||| ||| ||||||| |||| |
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| T |
15462698 |
aaagatctcttatctgcgcataatttttccgttcatcattgtctccgtgaaggaaatcaatgcgcggactacttgaccaagttgggatcttcatcaaatg |
15462599 |
T |
|
| Q |
110 |
aagagtgcttattccacgccacaccacctcatgagcttttggatttgattcgctttgatgccataggaactctgtttcctagagcatag |
198 |
Q |
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||||||||||| | || ||| | || |||||||||||| | ||||| ||||| |||||||| ||||||||||| ||||||||||||||| |
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| T |
15462598 |
aagagtgcttagttcatgcctccccccctcatgagcttcttgatttaattcgttttgatgctataggaactctatttcctagagcatag |
15462510 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 146; Significance: 9e-77; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 53 - 198
Target Start/End: Complemental strand, 42383484 - 42383339
Alignment:
| Q |
53 |
tccgtgagggaaaccaatgcgcggactatttggccaagttaggagcttcatctaatgaagagtgcttattccacgccacaccacctcatgagcttttgga |
152 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42383484 |
tccgtgagggaaaccaatgcgcggactatttggccaagttaggagcttcatctaatgaagagtgcttattccacgccacaccacctcatgagcttttgga |
42383385 |
T |
|
| Q |
153 |
tttgattcgctttgatgccataggaactctgtttcctagagcatag |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42383384 |
tttgattcgctttgatgccataggaactctgtttcctagagcatag |
42383339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 42401315 - 42401265
Alignment:
| Q |
1 |
caagacagcaaagatctcgtatctgtgcataatttttcagttcatcattgt |
51 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
42401315 |
caagacatcaaagatctcttatctgtgcataatttttcagttcatcattgt |
42401265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 113
Target Start/End: Original strand, 16324481 - 16324566
Alignment:
| Q |
28 |
cataatttttcagttcatcattgtgtccgtgagggaaaccaatgcgcggactatttggccaagttaggagcttcatctaatgaaga |
113 |
Q |
| |
|
|||||||| ||||| |||||||| |||| || || || |||||||||||||| ||||| || || ||||| ||||| |||||||| |
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| T |
16324481 |
cataatttctcagtctatcattgtttccgggaagggaatcaatgcgcggactacttggcgaaattgggagcgtcatcgaatgaaga |
16324566 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 138; Significance: 5e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 262 - 411
Target Start/End: Original strand, 30122520 - 30122669
Alignment:
| Q |
262 |
caatacattattatggatggtggggacaatgacaatggaaggaaacaaattgctaatattaacatagaaaatacataaaatactataagagacaacatga |
361 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
30122520 |
caatacattattatggagggtggggacaatgacaatggaaggaaacaaattgctaatattaacataaaaaatacataaaatactataagagacaacatga |
30122619 |
T |
|
| Q |
362 |
tgatgaaataagataaagattatgaagttcatgtctactcccaatgatgt |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
30122620 |
tgatgaaataagataaagattatgaagttcatgtctactcccaattatgt |
30122669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 2961230 - 2961410
Alignment:
| Q |
13 |
gatctcgtatctgtgcataatttttcagttcatcattgtgtccgtgagggaaaccaatgcgcggactatttggccaagttaggagcttcatctaatgaag |
112 |
Q |
| |
|
|||||| |||||| |||||| ||||| |||||||||||| || |||| ||||||||||| |||||||| ||||||||||| |||| |||||| ||||||| |
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| T |
2961230 |
gatctcttatctgcgcataacttttccgttcatcattgtctctgtgaaggaaaccaatgtgcggactacttggccaagttgggagattcatcgaatgaag |
2961329 |
T |
|
| Q |
113 |
agtgcttattccacgccacaccacctcatgagcttttggatttgattcgctttgatgccataggaactctgtttcctagagc |
194 |
Q |
| |
|
|||||||| | || ||| | || |||||||||||| | | ||| || | |||||||| ||||||||||| ||||||||||| |
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| T |
2961330 |
agtgcttaattcatgcctc-ccccctcatgagcttcttgttttaatctgttttgatgctataggaactctatttcctagagc |
2961410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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