View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6708_low_17 (Length: 386)
Name: NF6708_low_17
Description: NF6708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6708_low_17 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 39123453 - 39123838
Alignment:
| Q |
1 |
tcaatttgacttggtttaatatcttacaaaagaaaaaagcagggtcaaatcagttcctttggatttataagggagaagaatgaaactgtttaaatatgct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39123453 |
tcaatttgacttggtttaatatcttacaaaagaaaaaagcagggtcaaatcagttcctttggatttataagggagaagaatgaaactgtttaaatatgct |
39123552 |
T |
|
| Q |
101 |
actcattttaaggcgtgtaactctgtgttcacttcacatattaatgtgataattatatgtaaaactgtgaagaatttttggaaagttttttatatataca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39123553 |
actcattttaaggcgtgtaactctgtgttcacttcacatattaatgtgataattatatgtaaaactgtgaagaatttttggaaagttttttatatataca |
39123652 |
T |
|
| Q |
201 |
ttgtttggagtctgctgcatgtttaacattagacggagctttctttccaattgtgctttagattctgaaaaggaactcaatactcagattatgcannnnn |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
39123653 |
ttgtttggagtctgctgcatgtttaacattagacggagctttctttctaattgtgctttagattctgaaaaggaactcaatactccgattatgcattttt |
39123752 |
T |
|
| Q |
301 |
nnatcttccacttttccatcttcgtaattctaaaatcaaagtttacatatttattcttcctgcatattagatattatatcttttaa |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
39123753 |
ttatcttccacttttccatcttcgtaattctaaaatcaaagtttacatatttattcttcctgcatactagatattatatcttttaa |
39123838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University