View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6708_low_18 (Length: 379)
Name: NF6708_low_18
Description: NF6708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6708_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 16 - 364
Target Start/End: Original strand, 442524 - 442872
Alignment:
| Q |
16 |
atcaaggcagtgttattttgatgcgagccagccactgggttagacaaactgttgtttccggtttcattactagaacttgaattggaataagcctcgacaa |
115 |
Q |
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| T |
442524 |
atcaaggcagtgttattttgatgcgagccagccactgggttagacaaactgttgtttccggtttcattactagaacttgaattggaataagccccgacaa |
442623 |
T |
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| Q |
116 |
ccagtttaacttctgtaatactaaaattggaaccaggttgactcctgataccatcttctgtataattaggcttgttctctggtttagtgatgcccatttc |
215 |
Q |
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| T |
442624 |
ccagtttaacttctgtaatactaaaattggaaccaggttgactcctgataccatcttctgtataattaggcttgttctctggtttagtgatgcccatttc |
442723 |
T |
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| Q |
216 |
tgcgtttacatcagagttttccatactaactgtttctgtttcagtgctagttgtacgagtatcatgagtgacggcgctagaagcatcatcccccttgtat |
315 |
Q |
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| T |
442724 |
tgcgtttacatcagagttttccatactaactgtctctgtttcagtgctagttgtacgagtatcatgagtgacggcgctagaagcatcatcccccttgtat |
442823 |
T |
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| Q |
316 |
tgttcctcccgagcctcatgaatgttgttgctttcaaccaaaccttgat |
364 |
Q |
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| T |
442824 |
tgttcctcccgagcctcatgaatgttgttgctttcaaccaaaccttgat |
442872 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 184
Target Start/End: Complemental strand, 4301410 - 4301356
Alignment:
| Q |
130 |
gtaatactaaaattggaaccaggttgactcctgataccatcttctgtataattag |
184 |
Q |
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| T |
4301410 |
gtaatattaaaattggaacgaggttgatttctgataccgtcttctgtataattag |
4301356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 336
Target Start/End: Original strand, 47815285 - 47815370
Alignment:
| Q |
251 |
ctgtttcagtgctagttgtacgagtatcatgagtgacggcgctagaagcatcatcccccttgtattgttcctcccgagcctcatga |
336 |
Q |
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| T |
47815285 |
ctgtttcagtgctagtttcatgagtatcatgtgccacagcactagaggcatcatcagccttgtaatgttcttcccgagcttcatga |
47815370 |
T |
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