View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6708_low_19 (Length: 372)
Name: NF6708_low_19
Description: NF6708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6708_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 6022524 - 6022886
Alignment:
| Q |
1 |
cggttgctttgagaaaagttgtcgcaggagctttcatgttccttgtgctaattggactcctgagtgtcgatgggacatggtacatgatacggccaaacca |
100 |
Q |
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| T |
6022524 |
cggttgctttgagaaaagttgtcgcaggagctttcatgttccttgtgctaagtggactcctgagtgtcgatgggatatggtacatgatacagccaaacca |
6022623 |
T |
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| Q |
101 |
catttaaaacttcatggttaatgcttcnnnnnnnnnnnnnnnnnnaaaataatcatctaactagatagcactgtttttcttcaggaaaattttgtcatgt |
200 |
Q |
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| T |
6022624 |
catttaaaacttcatggttaatgcttcttttatttttatttttttaaaataatcatctaactagatagcactgtttttcttcaggaaaattttgtcatgt |
6022723 |
T |
|
| Q |
201 |
tatgccctctccatgctccctccttgttgccgtgtgaaagttcaggatcccaacacaatagcaaaaaacatacagctaagaaggttaaaatctgtagccg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
6022724 |
tatgccctctccatgctccctccttgttgccgtgtgaaagttcaggatcccaacacaatagcaaaaaacatacagcgaagaaggttaaaatctgtagccg |
6022823 |
T |
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| Q |
301 |
caaacatgacactactagccaaagtcagattgctcatggttctcacaagaaaattgtgctgtg |
363 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6022824 |
caaacatgacactactagccaaagtcagattgctcatggttctcacaagaaaattgtgctgtg |
6022886 |
T |
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