View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6708_low_2 (Length: 681)

Name: NF6708_low_2
Description: NF6708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6708_low_2
NF6708_low_2
[»] chr5 (5 HSPs)
chr5 (2-532)||(28532505-28533029)
chr5 (530-648)||(28533069-28533187)
chr5 (68-123)||(29021558-29021613)
chr5 (71-124)||(28673512-28673565)
chr5 (318-363)||(41900503-41900548)
[»] chr6 (14 HSPs)
chr6 (1-179)||(6588466-6588641)
chr6 (66-177)||(6416827-6416938)
chr6 (532-606)||(6587982-6588056)
chr6 (316-374)||(6593929-6593987)
chr6 (404-501)||(6588144-6588241)
chr6 (318-374)||(6423907-6423963)
chr6 (320-373)||(6410699-6410752)
chr6 (616-662)||(14810035-14810081)
chr6 (320-374)||(19633104-19633158)
chr6 (316-373)||(6417092-6417149)
chr6 (317-366)||(6596241-6596290)
chr6 (334-375)||(7132323-7132364)
chr6 (334-375)||(7135246-7135287)
chr6 (334-375)||(7138169-7138210)
[»] chr3 (7 HSPs)
chr3 (66-177)||(13469859-13469970)
chr3 (538-648)||(51763081-51763191)
chr3 (316-374)||(51763388-51763446)
chr3 (66-188)||(51763574-51763696)
chr3 (317-374)||(51113195-51113252)
chr3 (71-116)||(513925-513970)
chr3 (256-288)||(51763498-51763530)
[»] chr1 (3 HSPs)
chr1 (77-188)||(19467621-19467732)
chr1 (316-380)||(7555198-7555262)
chr1 (318-375)||(19467428-19467485)
[»] chr4 (10 HSPs)
chr4 (77-177)||(21833493-21833593)
chr4 (316-375)||(553759-553818)
chr4 (615-662)||(1537252-1537299)
chr4 (316-371)||(21833278-21833333)
chr4 (569-666)||(53759964-53760058)
chr4 (76-165)||(532589-532681)
chr4 (610-662)||(1547374-1547426)
chr4 (66-164)||(53761012-53761110)
chr4 (257-294)||(7225253-7225290)
chr4 (256-296)||(53760907-53760947)
[»] chr7 (9 HSPs)
chr7 (77-171)||(10615459-10615553)
chr7 (316-375)||(10615713-10615772)
chr7 (613-662)||(15091285-15091334)
chr7 (315-375)||(10169047-10169107)
chr7 (256-300)||(10169137-10169181)
chr7 (315-375)||(10176572-10176632)
chr7 (256-300)||(10176662-10176706)
chr7 (622-666)||(10167233-10167277)
chr7 (630-662)||(10616213-10616245)
[»] chr8 (4 HSPs)
chr8 (317-361)||(32151969-32152013)
chr8 (71-124)||(18314876-18314929)
chr8 (257-285)||(18314740-18314768)
chr8 (325-373)||(34935986-34936034)


Alignment Details
Target: chr5 (Bit Score: 432; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 2 - 532
Target Start/End: Original strand, 28532505 - 28533029
Alignment:
Q  2 ggtctctcacggagagcagaagcaatgactgcatcggttaataattgcttataaccatcaatgttgacttcttggagaagcttacagttgctgaacaagt 101  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28532505 ggtctctcacggagagcagaagcaatgcctgcatcggttaataattgcttataaccatcaatgttgacttcttggagaagcttacagttgctgaacaagt 28532604  T
Q  102 ggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtgaaagtgagagagcctctatcccattgttataactacg 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  28532605 ggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgtgaagtgaaagtgagagagcctctaccccattgttataactacg 28532704  T
Q  202 agtccgagtctctatcatagagatataatttaaggggtatttaagtatgaggtcgaggtcgagttcttcgagcaaagggaaacattctgcgataagaaat 301  Q
    ||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||      |||||||||||||||||||||||||||||||||    
T  28532705 agttcgagtctctatcatagagatataatttaaggggtattttagtctgaggtcgaggtcg------tcgagcaaagggaaacattctgcgataagaaat 28532798  T
Q  302 aggttaacaaagccggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgctgggaagcggttaccaacgtttggga 401  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  28532799 aggttaacaaagccggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgctgggaagcggttaccaacgtttggaa 28532898  T
Q  402 gtttgagtgaagtgaatttgaacgacgagaaacgagagatttggcagagaaggtcgtcgaggttgtgaccgagatagcgagagagattgagggaattgag 501  Q
    ||||||||||| ||| |||||| |||| ||||   ||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||| |||||||    
T  28532899 gtttgagtgaaatgattttgaatgacgggaaatctgagatttggcagagaaggtcgtcgaggttgttacctagatagcgagagagatcgaggaaattgag 28532998  T
Q  502 atgggtgaaccttttgaagaggctacgtagg 532  Q
    ||||||||||||||||||||||||| |||||    
T  28532999 atgggtgaaccttttgaagaggctaagtagg 28533029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 530 - 648
Target Start/End: Original strand, 28533069 - 28533187
Alignment:
Q  530 aggcggccggtgatggagaggaaccgtttggatacggtggagagagaactcaagctgcgacggttgttgttttcgtccataccgtcgttgatgatgaatc 629  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28533069 aggcgtccggtgatggagaggaaccgtttggatacggtggagagagaactcaagttgcgacggttgttgttttcgtccataccgtcgttgatgatgaatc 28533168  T
Q  630 tgaatatacattcccaaca 648  Q
    |||| ||||||||||||||    
T  28533169 tgaagatacattcccaaca 28533187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 29021558 - 29021613
Alignment:
Q  68 acttcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgat 123  Q
    ||||||| |||||||||||||||| | |  ||||||||||||||||||| ||||||    
T  29021558 acttcttcgagaagcttacagttgtttataaagtggaaaagtgattggtcgttgat 29021613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 28673565 - 28673512
Alignment:
Q  71 tcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatg 124  Q
    |||| |||||||||||||||| | | ||| |||||||||||||||| |||||||    
T  28673565 tcttcgagaagcttacagttgtttatcaaatggaaaagtgattggtcgttgatg 28673512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 363
Target Start/End: Complemental strand, 41900548 - 41900503
Alignment:
Q  318 aacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcg 363  Q
    ||||||||| |||||||||||||||||| ||||  |||||||||||    
T  41900548 aacaagtgagagaggtcaaagttgtaatctttttggaaaaagctcg 41900503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 4e-40; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 6588641 - 6588466
Alignment:
Q  1 tggtctctcacggagagcagaagcaatgactgcatcggttaataattgcttataaccatcaatgttgacttcttggagaagcttacagttgctgaacaag 100  Q
    |||||||||||||||||||||||||||| |||||| |||||||    |   | |||||   ||||||||||| |||||||||||||| ||| ||||||||    
T  6588641 tggtctctcacggagagcagaagcaatgcctgcattggttaattcacg---acaaccaaatatgttgacttcctggagaagcttacaattgttgaacaag 6588545  T
Q  101 tggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtgaaagtgagagagcct 179  Q
    |||||||| ||||| ||||||||||||||| ||||||||||||||||||| ||||||| |||||  |||||||||||||    
T  6588544 tggaaaagcgattgattgttgatgggaaagtaagaaagattaaccttgcgaagtttgaaaagtgcgagtgagagagcct 6588466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 177
Target Start/End: Original strand, 6416827 - 6416938
Alignment:
Q  66 tgacttcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtga 165  Q
    ||||||||| ||||||||||||||||  ||| || |||||||| ||||||||||| |  |||||   |||||||||||| ||||||||||| | |||||     
T  6416827 tgacttcttcgagaagcttacagttgtggaataactggaaaagggattggttgtttacaggaaatctagaaagattaactttgcggagtttaaaaagtgc 6416926  T
Q  166 aagtgagagagc 177  Q
    |||||| |||||    
T  6416927 aagtgatagagc 6416938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 532 - 606
Target Start/End: Complemental strand, 6588056 - 6587982
Alignment:
Q  532 gcggccggtgatggagaggaaccgtttggatacggtggagagagaactcaagctgcgacggttgttgttttcgtc 606  Q
    |||| ||||||||| ||||||| | |||||||||| |||||||||| ||| |||| |||||||||||||||||||    
T  6588056 gcggtcggtgatggcgaggaactgcttggatacggcggagagagaaatcatgctgtgacggttgttgttttcgtc 6587982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 316 - 374
Target Start/End: Complemental strand, 6593987 - 6593929
Alignment:
Q  316 ggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttg 374  Q
    ||||||| |||||||||||||||||||||| |||||||| ||| ||||||| |||||||    
T  6593987 ggaacaattgaaagaggtcaaagttgtaatcttttgtgagaaaactcgcaaaccatttg 6593929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 404 - 501
Target Start/End: Complemental strand, 6588241 - 6588144
Alignment:
Q  404 ttgagtgaagtgaatttgaacgacgagaaacgagagatttggcagagaaggtcgtcgaggttgtgaccgagatagcgagagagattgagggaattgag 501  Q
    ||||||||||||| ||| || |  | |||||||||||||||||| ||||||||||||||||  | ||||  ||| || ||||||||||||||| ||||    
T  6588241 ttgagtgaagtgattttcaatgttgggaaacgagagatttggcaaagaaggtcgtcgaggtcataaccgctatatcgcgagagattgagggaagtgag 6588144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 318 - 374
Target Start/End: Original strand, 6423907 - 6423963
Alignment:
Q  318 aacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttg 374  Q
    ||||||||| ||||||||||||||| |||||||| || ||||||||||| |||||||    
T  6423907 aacaagtgagagaggtcaaagttgttatgttttgggagaaagctcgcaacccatttg 6423963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 320 - 373
Target Start/End: Original strand, 6410699 - 6410752
Alignment:
Q  320 caagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccattt 373  Q
    |||||||||||||||||||||||||||||||| || ||| || |||| ||||||    
T  6410699 caagtgaaagaggtcaaagttgtaatgttttgggagaaaacttgcaacccattt 6410752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 616 - 662
Target Start/End: Original strand, 14810035 - 14810081
Alignment:
Q  616 gttgatgatgaatctgaatatacattcccaacactcatcaggtaaat 662  Q
    ||||||||||||||| || | || |||||||||||||||||||||||    
T  14810035 gttgatgatgaatctaaagacacgttcccaacactcatcaggtaaat 14810081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 320 - 374
Target Start/End: Original strand, 19633104 - 19633158
Alignment:
Q  320 caagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttg 374  Q
    ||||||| ||||||||||||||||||| |||  || ||||||||||| |||||||    
T  19633104 caagtgagagaggtcaaagttgtaatgctttcggagaaagctcgcaacccatttg 19633158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 373
Target Start/End: Original strand, 6417092 - 6417149
Alignment:
Q  316 ggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccattt 373  Q
    ||||||||||| |||||||||||||||| | ||||| || |||||||| || ||||||    
T  6417092 ggaacaagtgagagaggtcaaagttgtattcttttgggagaaagctcgtaacccattt 6417149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 366
Target Start/End: Complemental strand, 6596290 - 6596241
Alignment:
Q  317 gaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaa 366  Q
    |||||||||| ||||||||||||||| |||||||| || ||| |||||||    
T  6596290 gaacaagtgagagaggtcaaagttgttatgttttgggagaaaactcgcaa 6596241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 375
Target Start/End: Original strand, 7132323 - 7132364
Alignment:
Q  334 caaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 375  Q
    |||||||||||||||||| || ||||||||||| ||||||||    
T  7132323 caaagttgtaatgttttgggagaaagctcgcaacccatttgc 7132364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 375
Target Start/End: Original strand, 7135246 - 7135287
Alignment:
Q  334 caaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 375  Q
    |||||||||||||||||| || ||||||||||| ||||||||    
T  7135246 caaagttgtaatgttttgggagaaagctcgcaacccatttgc 7135287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 375
Target Start/End: Original strand, 7138169 - 7138210
Alignment:
Q  334 caaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 375  Q
    |||||||||||||||||| || ||||||||||| ||||||||    
T  7138169 caaagttgtaatgttttgggagaaagctcgcaacccatttgc 7138210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 7e-23; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 66 - 177
Target Start/End: Complemental strand, 13469970 - 13469859
Alignment:
Q  66 tgacttcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtga 165  Q
    ||||||||| ||||||||||||||||  ||| ||||||||||||||| ||||||| || |||||   |||||||||||||||||||||||| | |||||     
T  13469970 tgacttcttcgagaagcttacagttgtggaataagtggaaaagtgataggttgtttataggaaaactagaaagattaaccttgcggagtttaaaaagtgc 13469871  T
Q  166 aagtgagagagc 177  Q
    |||||| |||||    
T  13469870 aagtgatagagc 13469859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 538 - 648
Target Start/End: Complemental strand, 51763191 - 51763081
Alignment:
Q  538 ggtgatggagaggaaccgtttggatacggtggagagagaactcaagctgcgacggttgttgttttcgtccataccgtcgttgatgatgaatctgaatata 637  Q
    |||||||||||||||| ||||||| ||| ||||||||||| ||||| ||||||||||||| | ||||||   | | | ||||||||||||| |||| |||    
T  51763191 ggtgatggagaggaactgtttggaaacgatggagagagaattcaagttgcgacggttgttttcttcgtcatcatcattgttgatgatgaatttgaagata 51763092  T
Q  638 cattcccaaca 648  Q
     ||||||||||    
T  51763091 gattcccaaca 51763081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 316 - 374
Target Start/End: Complemental strand, 51763446 - 51763388
Alignment:
Q  316 ggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttg 374  Q
    ||||||||||| ||| |||||||||||||| |||||||||||| ||||||| |||||||    
T  51763446 ggaacaagtgagagatgtcaaagttgtaatcttttgtgaaaaaactcgcaacccatttg 51763388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 188
Target Start/End: Complemental strand, 51763696 - 51763574
Alignment:
Q  66 tgacttcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtga 165  Q
    |||| ||||||||||||||||||||||  |  | ||||||||| ||||| ||||| |||||| ||  ||||| ||||||||| || ||||||| ||| |     
T  51763696 tgacatcttggagaagcttacagttgcatagaaggtggaaaagcgattgattgtttatgggacagccagaaaaattaaccttacgcagtttgaaaagagc 51763597  T
Q  166 aagtgagagagcctctatcccat 188  Q
    |||||| || || | ||||||||    
T  51763596 aagtgaaagtgcttgtatcccat 51763574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 317 - 374
Target Start/End: Complemental strand, 51113252 - 51113195
Alignment:
Q  317 gaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttg 374  Q
    |||||||||| |||||||| ||||||||| ||||  || |||||||||||||||||||    
T  51113252 gaacaagtgagagaggtcagagttgtaatattttccgagaaagctcgcaatccatttg 51113195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 513970 - 513925
Alignment:
Q  71 tcttggagaagcttacagttgctgaacaagtggaaaagtgattggt 116  Q
    ||||| ||||||||||||||  |||||||||||||||| |||||||    
T  513970 tcttgaagaagcttacagtttttgaacaagtggaaaagcgattggt 513925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 256 - 288
Target Start/End: Complemental strand, 51763530 - 51763498
Alignment:
Q  256 gaggtcgagttcttcgagcaaagggaaacattc 288  Q
    ||||||||||||||||||||| |||||||||||    
T  51763530 gaggtcgagttcttcgagcaatgggaaacattc 51763498  T

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Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 77 - 188
Target Start/End: Complemental strand, 19467732 - 19467621
Alignment:
Q  77 agaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtgaaagtgagagag 176  Q
    ||||||||||| ||| | |||||||| ||||  |||| || | | |||||||||  |||||||||||||||||||||||||||||||| |||||| ||||    
T  19467732 agaagcttacaattgttaaacaagtgaaaaatcgatttgtcgctcatgggaaagccagaaagattaaccttgcggagtttgagaagtgcaagtgaaagag 19467633  T
Q  177 cctctatcccat 188  Q
    |||||| |||||    
T  19467632 cctctaccccat 19467621  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 316 - 380
Target Start/End: Original strand, 7555198 - 7555262
Alignment:
Q  316 ggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgctggga 380  Q
    |||||||||||  ||||| ||||||||||| ||||| || ||||||||||||||| |||| ||||    
T  7555198 ggaacaagtgagtgaggttaaagttgtaatattttgggagaaagctcgcaatccaattgcaggga 7555262  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 375
Target Start/End: Complemental strand, 19467485 - 19467428
Alignment:
Q  318 aacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 375  Q
    ||||||||| |||||||||||||||||| ||||| |  ||| ||||||| ||||||||    
T  19467485 aacaagtgagagaggtcaaagttgtaatattttgagtgaaaactcgcaacccatttgc 19467428  T

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Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 77 - 177
Target Start/End: Complemental strand, 21833593 - 21833493
Alignment:
Q  77 agaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtgaaagtgagagag 176  Q
    ||||||||||| ||  | | |||||||||||| ||||| ||||| |||||||||  |||||||||||||||||||||||||| ||||| |||||| ||||    
T  21833593 agaagcttacaattctttagcaagtggaaaagagattgattgtttatgggaaagccagaaagattaaccttgcggagtttgataagtgcaagtgaaagag 21833494  T
Q  177 c 177  Q
    |    
T  21833493 c 21833493  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 316 - 375
Target Start/End: Original strand, 553759 - 553818
Alignment:
Q  316 ggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 375  Q
    |||||| |||| |||||||||||||||||||||||| || ||||||||||| ||||||||    
T  553759 ggaacaggtgagagaggtcaaagttgtaatgttttgggagaaagctcgcaacccatttgc 553818  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 615 - 662
Target Start/End: Complemental strand, 1537299 - 1537252
Alignment:
Q  615 cgttgatgatgaatctgaatatacattcccaacactcatcaggtaaat 662  Q
    ||||| ||| ||||||||||| ||||||||||||||||||||||||||    
T  1537299 cgttgttgaggaatctgaatacacattcccaacactcatcaggtaaat 1537252  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 316 - 371
Target Start/End: Complemental strand, 21833333 - 21833278
Alignment:
Q  316 ggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccat 371  Q
    ||||||||||| |||||||||||| ||||||||||||| |||| ||||||| ||||    
T  21833333 ggaacaagtgagagaggtcaaagtagtaatgttttgtgcaaaaactcgcaacccat 21833278  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 569 - 666
Target Start/End: Complemental strand, 53760058 - 53759964
Alignment:
Q  569 gagagagaactcaagctgcgacggttgttgttttcgtccataccgtcgttgatgatgaatctgaatatacattcccaacactcatcaggtaaatctga 666  Q
    ||||||||| ||||| || ||||||||||||||| |||| |   || |||||||| || | |||| ||| ||||||| ||||||||||||||||||||    
T  53760058 gagagagaattcaagttgtgacggttgttgtttttgtcctt---gttgttgatgacgagtttgaagatagattcccagcactcatcaggtaaatctga 53759964  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 165
Target Start/End: Original strand, 532589 - 532681
Alignment:
Q  76 gagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatg--ggaaag-gaagaaagattaaccttgcggagtttgagaagtga 165  Q
    |||||||||||| ||  |||||||||||||||| ||||||| |||||||  |  | | | |||||||||||||||||||||||||| ||||||    
T  532589 gagaagcttacaatttttgaacaagtggaaaagcgattggtcgttgatgtagtcatgagtagaaagattaaccttgcggagtttgaaaagtga 532681  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 610 - 662
Target Start/End: Complemental strand, 1547426 - 1547374
Alignment:
Q  610 accgtcgttgatgatgaatctgaatatacattcccaacactcatcaggtaaat 662  Q
    ||||||| ||||||||||| |||| ||| ||||||||||||| ||||||||||    
T  1547426 accgtcgatgatgatgaatttgaagatagattcccaacactcgtcaggtaaat 1547374  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 66 - 164
Target Start/End: Complemental strand, 53761110 - 53761012
Alignment:
Q  66 tgacttcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtg 164  Q
    |||| ||||| ||||| ||||| ||  | |||||||||||||||||||| | | | ||||  |||  ||||||||||||||| |||||||||| |||||    
T  53761110 tgacctcttgaagaagattacaattcttcaacaagtggaaaagtgattgttcgattatggttaagccagaaagattaaccttacggagtttgaaaagtg 53761012  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 294
Target Start/End: Complemental strand, 7225290 - 7225253
Alignment:
Q  257 aggtcgagttcttcgagcaaagggaaacattctgcgat 294  Q
    ||||||||||||||||||||||||||||| || |||||    
T  7225290 aggtcgagttcttcgagcaaagggaaacaatccgcgat 7225253  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 256 - 296
Target Start/End: Complemental strand, 53760947 - 53760907
Alignment:
Q  256 gaggtcgagttcttcgagcaaagggaaacattctgcgataa 296  Q
    |||||||||||||||  |||||||||||||||| |||||||    
T  53760947 gaggtcgagttcttcccgcaaagggaaacattccgcgataa 53760907  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 77 - 171
Target Start/End: Original strand, 10615459 - 10615553
Alignment:
Q  77 agaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtgaaagtga 171  Q
    |||||||||||||||  || |||||||| ||| ||||| ||||| ||| ||||   |||||||||||||||||||||||| | ||||||||||||    
T  10615459 agaagcttacagttgtcgagcaagtggagaagggattgattgtttatgagaaaactagaaagattaaccttgcggagtttaaaaagtgaaagtga 10615553  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 316 - 375
Target Start/End: Original strand, 10615713 - 10615772
Alignment:
Q  316 ggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 375  Q
    ||||||||||| |||||||||||||||||| ||||| || |||||||| || ||||||||    
T  10615713 ggaacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaacccatttgc 10615772  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 613 - 662
Target Start/End: Complemental strand, 15091334 - 15091285
Alignment:
Q  613 gtcgttgatgatgaatctgaatatacattcccaacactcatcaggtaaat 662  Q
    ||||||||||||||||||||| |  ||||||||||||||||| |||||||    
T  15091334 gtcgttgatgatgaatctgaagacgcattcccaacactcatcgggtaaat 15091285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 315 - 375
Target Start/End: Complemental strand, 10169107 - 10169047
Alignment:
Q  315 cggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 375  Q
    |||||||||||| ||||||||||||| |||| ||||| || ||| ||||||| ||||||||    
T  10169107 cggaacaagtgagagaggtcaaagttctaatattttgagagaaaactcgcaacccatttgc 10169047  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 256 - 300
Target Start/End: Complemental strand, 10169181 - 10169137
Alignment:
Q  256 gaggtcgagttcttcgagcaaagggaaacattctgcgataagaaa 300  Q
    ||||| ||||||||| |||||||| ||||||||||||||||||||    
T  10169181 gaggttgagttcttcaagcaaaggaaaacattctgcgataagaaa 10169137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 315 - 375
Target Start/End: Complemental strand, 10176632 - 10176572
Alignment:
Q  315 cggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 375  Q
    |||||||||||| ||||||||||||| |||| ||||| || ||| ||||||| ||||||||    
T  10176632 cggaacaagtgagagaggtcaaagttctaatattttgagagaaaactcgcaacccatttgc 10176572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 256 - 300
Target Start/End: Complemental strand, 10176706 - 10176662
Alignment:
Q  256 gaggtcgagttcttcgagcaaagggaaacattctgcgataagaaa 300  Q
    ||||| ||||||||| |||||||| ||||||||||||||||||||    
T  10176706 gaggttgagttcttcaagcaaaggaaaacattctgcgataagaaa 10176662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 622 - 666
Target Start/End: Complemental strand, 10167277 - 10167233
Alignment:
Q  622 gatgaatctgaatatacattcccaacactcatcaggtaaatctga 666  Q
    |||||||||||||||  |||||||||| || ||||||||||||||    
T  10167277 gatgaatctgaatatcaattcccaacattcgtcaggtaaatctga 10167233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 630 - 662
Target Start/End: Original strand, 10616213 - 10616245
Alignment:
Q  630 tgaatatacattcccaacactcatcaggtaaat 662  Q
    |||| ||||||||||||||||||||||||||||    
T  10616213 tgaagatacattcccaacactcatcaggtaaat 10616245  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 317 - 361
Target Start/End: Original strand, 32151969 - 32152013
Alignment:
Q  317 gaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagct 361  Q
    |||||||||| |||||||||||||||||||||||| || ||||||    
T  32151969 gaacaagtgagagaggtcaaagttgtaatgttttgggagaaagct 32152013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 18314929 - 18314876
Alignment:
Q  71 tcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatg 124  Q
    |||| |||||||||||||||  |||||||||||||||| ||||| | |||||||    
T  18314929 tcttcgagaagcttacagttcttgaacaagtggaaaagcgattgatcgttgatg 18314876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 257 - 285
Target Start/End: Complemental strand, 18314768 - 18314740
Alignment:
Q  257 aggtcgagttcttcgagcaaagggaaaca 285  Q
    |||||||||||||||||||||||||||||    
T  18314768 aggtcgagttcttcgagcaaagggaaaca 18314740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 325 - 373
Target Start/End: Complemental strand, 34936034 - 34935986
Alignment:
Q  325 gaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccattt 373  Q
    |||||| |||||||||||||| |||||||| ||| ||||||| ||||||    
T  34936034 gaaagatgtcaaagttgtaatattttgtgagaaaactcgcaaaccattt 34935986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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