View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6708_low_21 (Length: 365)
Name: NF6708_low_21
Description: NF6708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6708_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 6343120 - 6343468
Alignment:
| Q |
1 |
caattgtcactatttccttcatcgctcatatgaattagctgttaaaaagtaggttgtatcagactttcaaaatatcatatttaaacctaaaaaataaatc |
100 |
Q |
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| T |
6343120 |
caattgtgactatttccttcatcgctcatatgaattagctgttaaaaggtaggtcgtatcagactttcaaaatgtcatatttaaacctaaaaaataaatt |
6343219 |
T |
|
| Q |
101 |
tatgatagaccgcatgctagacataggccttaaattttctgacagattatacttaggtcttgcaaaatttagttcgaccttgcctattatatttcaaaaa |
200 |
Q |
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| T |
6343220 |
tatgatagaccgcatgctagatacaggccttaaattttttaacagattatccttaagtcttgcaaaatttagttcgacc-tgcc-----tatttcaaaaa |
6343313 |
T |
|
| Q |
201 |
ttgctcaaattcatttcataattgttcattcccttaattcatcggaagttaactgttgctcggtatttttcagcggcagttcagatcggtttattcattt |
300 |
Q |
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| T |
6343314 |
ttgctcaaatctatttcataattgttcattcgcttaattcattggaagttaactgttgctcgatatttttcagcggcagttcagatcggtttattcattt |
6343413 |
T |
|
| Q |
301 |
tttaagttggtgtaaatagcaatatgtaccccatattcgcttcccatgatgtcca |
355 |
Q |
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| T |
6343414 |
tttaagttgatgtaaatagaaatatgtaccccatattcgcttcccatgacgtcca |
6343468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 42 - 241
Target Start/End: Original strand, 6342387 - 6342586
Alignment:
| Q |
42 |
ttaaaaagtaggttgtatcagactttcaaaatatcatatttaaacctaaaaaataaatctatgatagaccgcatgctagacataggccttaaattttctg |
141 |
Q |
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| T |
6342387 |
ttaaatagtaggtcatatcagatttttaaaatgtcacattcaaacctaaataataaacctacgacacgccacatgctagacattgatcttaaaaattttg |
6342486 |
T |
|
| Q |
142 |
acagattatacttaggtcttgcaaaatttagttcgaccttgcctattatatttcaaaaattgctcaaattcatttcataattgttcattcccttaattca |
241 |
Q |
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| T |
6342487 |
gtagattagacttagattttgcaaaatttagttcggcctaacctattatattttgaagattgctctaatccatgtcctaattattcatcccattaattca |
6342586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 157
Target Start/End: Original strand, 9710930 - 9711030
Alignment:
| Q |
57 |
tatcagactttcaaaatatcatatttaaacctaaaaaataaatctatgatagaccgcatgctagacataggccttaaattttctgacagattatacttag |
156 |
Q |
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| T |
9710930 |
tatcagactttaaaaatatcaaattcagttttaaaatataagtctatgataaaccgcatgttaaatttaggtcttaaattttttgacaaattagacttag |
9711029 |
T |
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| Q |
157 |
g |
157 |
Q |
| |
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| |
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| T |
9711030 |
g |
9711030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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