View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6708_low_23 (Length: 345)
Name: NF6708_low_23
Description: NF6708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6708_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 13 - 330
Target Start/End: Complemental strand, 29624999 - 29624664
Alignment:
| Q |
13 |
gggctggtgccaggggtttttgtactgcattcagtcgcacagatgaaaactttggaaggttattttgat--------------------agtgattggtt |
92 |
Q |
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| T |
29624999 |
gggctggtgccaggggtttttgtactgcattcagtcgcacagatgaaaactttggaaggttattttgattttttaaaatgtattttgatagtgattggtt |
29624900 |
T |
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| Q |
93 |
cattgttggagacgtttactactccattactgagtctctaaggggagacaggggtgttgatcaaaagttagaacgaatgtttcattctattcctatacta |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29624899 |
cattgttggagacgtttactactccattactgagtctctaaggggagacagg--tgttgatcaaaagttagaacgaatgtttcattctattcctatacta |
29624802 |
T |
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| Q |
193 |
catgtatttgaagaatacttgtgttttggcatcactgtttgatcattttttgcctatatgatttactgtttataactttgtgataaaagctagtgttgcc |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29624801 |
catgtatttgaagaatacttgtgttttggcatcactgtttgatctttttttgcctatatgatttactgtttataactttgtgataaaagctagtgttgcc |
29624702 |
T |
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| Q |
293 |
atatatcagaagtatactatggcttaattaacatctga |
330 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
29624701 |
atatatcagaagtatactatggcttaattaacatctga |
29624664 |
T |
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