View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6708_low_24 (Length: 342)
Name: NF6708_low_24
Description: NF6708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6708_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 28908175 - 28907845
Alignment:
| Q |
1 |
atttacaattttttatttggagttgacgtacaaacttagtagttactgaattttggatgtcatcttttacagacagatgatctgcaagatcatatcatta |
100 |
Q |
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| T |
28908175 |
atttacatttttttatttggagttgacgtacaaacttagtagttactgaattttggatgtcatcttttacagacagatgatctgcaagatcatatcatta |
28908076 |
T |
|
| Q |
101 |
tttgtggatttggacgagttggccaggtaaattctctatattttggtttgcttagttagtttacataagtgtgctggaatttacctttgttattttcaga |
200 |
Q |
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| T |
28908075 |
tttgtggatttggacgagttggccaggtaaattctctatattttggtttgcttagttagtttacataaatgtgctggaatttacctttgttattttcaga |
28907976 |
T |
|
| Q |
201 |
tcattgcacaacttctttccgagcgacttattccatttgttgcactagatgtgagaaggtaacacaacat-cctaattgaaatttctatccttttcttgt |
299 |
Q |
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| T |
28907975 |
tcattgcacaacttctttccgagcgacttattccatttgttgcactagatgtgagaaggtaacacaacatccctaatttaaatttctatccttttcttgt |
28907876 |
T |
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| Q |
300 |
aattgttcttatggatgaatgatttgatgtc |
330 |
Q |
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| T |
28907875 |
aattgttcttatggatgaatgatttgatgtc |
28907845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 186 - 263
Target Start/End: Original strand, 11848293 - 11848370
Alignment:
| Q |
186 |
tttgttattttcagatcattgcacaacttctttccgagcgacttattccatttgttgcactagatgtgagaaggtaac |
263 |
Q |
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| T |
11848293 |
tttgttattctcagatcattgcacaacttctttctgagcgacttattccttttgtcgcactagatgtgcgaaggtaac |
11848370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 63 - 128
Target Start/End: Original strand, 11848163 - 11848228
Alignment:
| Q |
63 |
tcttttacagacagatgatctgcaagatcatatcattatttgtggatttggacgagttggccaggt |
128 |
Q |
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|||||| |||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
11848163 |
tctttttcagacagacgatctgcgtgatcatatcattatttgtggatttgggcgagttggccaggt |
11848228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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