View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6708_low_26 (Length: 315)

Name: NF6708_low_26
Description: NF6708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6708_low_26
NF6708_low_26
[»] chr4 (37 HSPs)
chr4 (105-296)||(19429560-19429751)
chr4 (10-117)||(19429763-19429870)
chr4 (208-298)||(4663766-4663856)
chr4 (32-127)||(3639099-3639194)
chr4 (195-292)||(46019702-46019799)
chr4 (207-281)||(3249801-3249875)
chr4 (262-296)||(46013372-46013406)
chr4 (23-96)||(1017103-1017176)
chr4 (209-298)||(44319861-44319949)
chr4 (262-295)||(46247182-46247215)
chr4 (250-298)||(54325107-54325156)
chr4 (252-296)||(56007639-56007684)
chr4 (178-234)||(4684243-4684299)
chr4 (207-298)||(30024609-30024700)
chr4 (262-298)||(43372039-43372075)
chr4 (191-298)||(49219032-49219139)
chr4 (221-296)||(23819013-23819087)
chr4 (20-115)||(28615391-28615485)
chr4 (264-298)||(2883938-2883972)
chr4 (216-288)||(4191657-4191730)
chr4 (185-298)||(21157655-21157768)
chr4 (19-133)||(22239470-22239584)
chr4 (243-288)||(23815314-23815360)
chr4 (23-77)||(46860012-46860066)
chr4 (245-298)||(54327519-54327573)
chr4 (20-133)||(7730638-7730750)
chr4 (183-295)||(7749155-7749267)
chr4 (32-117)||(21157822-21157907)
chr4 (262-295)||(50745964-50745997)
chr4 (43-88)||(51555712-51555757)
chr4 (64-117)||(56249578-56249631)
chr4 (262-298)||(927440-927476)
chr4 (262-290)||(3662312-3662340)
chr4 (64-108)||(13126538-13126582)
chr4 (20-88)||(25717676-25717744)
chr4 (262-298)||(27623599-27623635)
chr4 (250-297)||(32724070-32724118)
[»] chr3 (30 HSPs)
chr3 (19-133)||(21872213-21872327)
chr3 (18-114)||(24624267-24624363)
chr3 (186-295)||(54775016-54775125)
chr3 (228-288)||(3015929-3015988)
chr3 (262-296)||(31337473-31337507)
chr3 (185-298)||(32703025-32703138)
chr3 (245-298)||(49586986-49587040)
chr3 (207-275)||(16790181-16790249)
chr3 (199-298)||(21862245-21862345)
chr3 (222-294)||(38462205-38462277)
chr3 (108-148)||(21131537-21131577)
chr3 (20-96)||(25459549-25459625)
chr3 (204-278)||(27888693-27888768)
chr3 (177-298)||(905040-905161)
chr3 (262-296)||(1816547-1816581)
chr3 (245-298)||(24887353-24887407)
chr3 (20-78)||(26603286-26603344)
chr3 (206-298)||(47584382-47584474)
chr3 (110-171)||(52323929-52323990)
chr3 (262-298)||(2201092-2201128)
chr3 (245-296)||(10101548-10101600)
chr3 (245-296)||(10212473-10212525)
chr3 (245-296)||(22232772-22232824)
chr3 (105-133)||(24158531-24158559)
chr3 (245-281)||(32069097-32069133)
chr3 (262-298)||(42808943-42808979)
chr3 (207-298)||(43116498-43116589)
chr3 (20-88)||(45590734-45590802)
chr3 (262-298)||(48397610-48397646)
chr3 (116-173)||(49586975-49587034)
[»] scaffold0590 (1 HSPs)
scaffold0590 (183-297)||(1145-1259)
[»] scaffold0275 (1 HSPs)
scaffold0275 (183-297)||(2716-2830)
[»] chr5 (24 HSPs)
chr5 (245-298)||(33234308-33234361)
chr5 (204-298)||(35135732-35135826)
chr5 (206-295)||(6739780-6739869)
chr5 (18-133)||(38047796-38047911)
chr5 (206-295)||(20982208-20982297)
chr5 (250-298)||(14295457-14295506)
chr5 (20-117)||(14331421-14331517)
chr5 (183-275)||(26516183-26516275)
chr5 (125-173)||(16380639-16380686)
chr5 (263-298)||(583843-583878)
chr5 (248-298)||(29117000-29117051)
chr5 (263-298)||(32059659-32059694)
chr5 (244-298)||(32969187-32969242)
chr5 (261-296)||(41277422-41277457)
chr5 (245-298)||(465900-465954)
chr5 (250-295)||(28586839-28586885)
chr5 (105-150)||(36774735-36774778)
chr5 (183-298)||(18704106-18704221)
chr5 (262-298)||(985597-985633)
chr5 (20-68)||(17369306-17369354)
chr5 (230-315)||(21782620-21782707)
chr5 (105-133)||(30217096-30217124)
chr5 (262-298)||(36539710-36539746)
chr5 (30-98)||(38033956-38034024)
[»] chr2 (39 HSPs)
chr2 (222-298)||(10143096-10143172)
chr2 (206-296)||(42817448-42817538)
chr2 (22-128)||(28803451-28803557)
chr2 (187-298)||(35459799-35459910)
chr2 (217-293)||(35809852-35809927)
chr2 (177-240)||(11393494-11393557)
chr2 (177-240)||(11410155-11410218)
chr2 (203-298)||(29430661-29430755)
chr2 (183-294)||(18884766-18884878)
chr2 (214-298)||(14209193-14209277)
chr2 (194-298)||(17221610-17221714)
chr2 (20-117)||(18884921-18885018)
chr2 (185-281)||(31461325-31461421)
chr2 (21-114)||(43456627-43456720)
chr2 (262-298)||(5043630-5043666)
chr2 (207-298)||(43808485-43808576)
chr2 (263-298)||(7103553-7103588)
chr2 (178-288)||(15171130-15171240)
chr2 (250-296)||(33192144-33192191)
chr2 (245-298)||(3458603-3458657)
chr2 (20-78)||(7103392-7103450)
chr2 (245-298)||(17952771-17952825)
chr2 (245-298)||(28803576-28803630)
chr2 (237-298)||(31740029-31740091)
chr2 (194-287)||(33576675-33576768)
chr2 (183-225)||(37474656-37474698)
chr2 (32-98)||(42852633-42852699)
chr2 (20-78)||(43199928-43199986)
chr2 (262-295)||(13866853-13866886)
chr2 (185-258)||(15200440-15200512)
chr2 (245-296)||(5133718-5133770)
chr2 (262-298)||(6546942-6546978)
chr2 (262-298)||(11513862-11513898)
chr2 (262-298)||(18962108-18962144)
chr2 (262-298)||(29429827-29429863)
chr2 (21-61)||(31558833-31558873)
chr2 (262-298)||(33942114-33942150)
chr2 (194-281)||(38239638-38239725)
chr2 (263-295)||(43299476-43299508)
[»] chr7 (23 HSPs)
chr7 (187-298)||(49060429-49060540)
chr7 (206-293)||(47003995-47004082)
chr7 (262-296)||(31338472-31338506)
chr7 (183-296)||(31341079-31341192)
chr7 (262-296)||(46531497-46531531)
chr7 (18-119)||(23214907-23215008)
chr7 (206-298)||(27481364-27481456)
chr7 (19-96)||(30751594-30751671)
chr7 (260-296)||(819832-819868)
chr7 (222-293)||(2223072-2223143)
chr7 (20-76)||(29363603-29363659)
chr7 (245-296)||(39591539-39591591)
chr7 (183-298)||(22759069-22759186)
chr7 (232-298)||(23918891-23918957)
chr7 (262-296)||(5006581-5006615)
chr7 (191-296)||(25511520-25511625)
chr7 (183-296)||(45593791-45593903)
chr7 (206-281)||(1431395-1431470)
chr7 (262-298)||(18749880-18749916)
chr7 (262-298)||(24975868-24975904)
chr7 (42-98)||(31002822-31002878)
chr7 (245-296)||(35536053-35536105)
chr7 (248-299)||(47046177-47046229)
[»] chr1 (41 HSPs)
chr1 (231-298)||(15360827-15360894)
chr1 (183-286)||(23895221-23895324)
chr1 (20-95)||(23373232-23373307)
chr1 (20-78)||(6292585-6292643)
chr1 (245-298)||(48830146-48830200)
chr1 (205-288)||(4338555-4338639)
chr1 (20-77)||(24460320-24460377)
chr1 (106-155)||(26179464-26179513)
chr1 (42-82)||(15581343-15581383)
chr1 (262-298)||(40833905-40833941)
chr1 (208-298)||(4200139-4200229)
chr1 (183-242)||(29794048-29794107)
chr1 (105-173)||(46499902-46499972)
chr1 (183-242)||(49365914-49365973)
chr1 (213-298)||(49516984-49517070)
chr1 (262-292)||(4548685-4548715)
chr1 (222-295)||(20713580-20713653)
chr1 (250-288)||(24502915-24502953)
chr1 (20-106)||(33723301-33723387)
chr1 (256-298)||(38219868-38219910)
chr1 (245-298)||(42556701-42556755)
chr1 (262-296)||(43420222-43420256)
chr1 (246-298)||(1879097-1879150)
chr1 (22-95)||(5157148-5157221)
chr1 (230-298)||(27140417-27140485)
chr1 (265-298)||(28788608-28788641)
chr1 (172-225)||(29665890-29665943)
chr1 (246-298)||(44936660-44936713)
chr1 (200-296)||(2152160-2152254)
chr1 (262-298)||(2522600-2522636)
chr1 (183-223)||(5090757-5090797)
chr1 (262-298)||(6262703-6262739)
chr1 (245-288)||(14737785-14737829)
chr1 (185-288)||(15437850-15437953)
chr1 (245-296)||(15488900-15488952)
chr1 (266-298)||(21002121-21002153)
chr1 (262-298)||(27738250-27738286)
chr1 (262-298)||(30257647-30257683)
chr1 (219-298)||(44032069-44032148)
chr1 (208-296)||(45107533-45107620)
chr1 (262-298)||(46499924-46499960)
[»] chr6 (36 HSPs)
chr6 (185-287)||(32975865-32975967)
chr6 (186-295)||(5328862-5328971)
chr6 (183-287)||(3155061-3155165)
chr6 (199-298)||(32386169-32386268)
chr6 (54-117)||(32976032-32976095)
chr6 (245-298)||(4006660-4006714)
chr6 (177-298)||(21959607-21959728)
chr6 (43-133)||(27857396-27857486)
chr6 (199-288)||(34429770-34429859)
chr6 (206-298)||(2206498-2206590)
chr6 (210-298)||(22742278-22742366)
chr6 (193-238)||(24330013-24330058)
chr6 (245-298)||(32513771-32513824)
chr6 (182-297)||(9833168-9833283)
chr6 (42-98)||(34538159-34538215)
chr6 (194-296)||(8349736-8349838)
chr6 (206-288)||(31672548-31672630)
chr6 (39-114)||(33385586-33385661)
chr6 (262-296)||(10154185-10154219)
chr6 (207-296)||(31420867-31420956)
chr6 (207-288)||(33068641-33068722)
chr6 (263-296)||(9027542-9027575)
chr6 (265-298)||(9326923-9326956)
chr6 (194-298)||(10452430-10452534)
chr6 (228-288)||(24836279-24836339)
chr6 (32-89)||(24973958-24974015)
chr6 (105-150)||(32578014-32578059)
chr6 (224-298)||(281918-281996)
chr6 (50-114)||(283152-283216)
chr6 (262-298)||(3204612-3204648)
chr6 (56-132)||(4248973-4249049)
chr6 (262-298)||(4420609-4420645)
chr6 (262-298)||(7713989-7714025)
chr6 (262-298)||(7785812-7785848)
chr6 (243-287)||(11393831-11393875)
chr6 (262-298)||(29274299-29274335)
[»] scaffold0024 (1 HSPs)
scaffold0024 (206-295)||(27484-27573)
[»] chr8 (38 HSPs)
chr8 (185-282)||(34563137-34563234)
chr8 (20-82)||(37353091-37353153)
chr8 (186-285)||(39392744-39392843)
chr8 (21-88)||(4560585-4560652)
chr8 (185-298)||(787176-787289)
chr8 (26-96)||(2364385-2364455)
chr8 (20-133)||(10488501-10488614)
chr8 (43-88)||(13652299-13652344)
chr8 (43-88)||(13710942-13710987)
chr8 (245-289)||(40728497-40728542)
chr8 (20-132)||(4763933-4764045)
chr8 (176-295)||(41336718-41336837)
chr8 (172-294)||(4558672-4558794)
chr8 (18-133)||(34770906-34771021)
chr8 (215-298)||(37461060-37461142)
chr8 (262-296)||(8066913-8066947)
chr8 (262-292)||(20672736-20672766)
chr8 (209-298)||(28468300-28468389)
chr8 (245-298)||(34788497-34788551)
chr8 (18-95)||(2487925-2488002)
chr8 (245-298)||(6509373-6509425)
chr8 (245-293)||(12224974-12225023)
chr8 (194-298)||(12972752-12972856)
chr8 (261-294)||(26479742-26479775)
chr8 (194-286)||(29699150-29699242)
chr8 (199-264)||(31884495-31884559)
chr8 (33-98)||(31884872-31884937)
chr8 (43-132)||(31915235-31915324)
chr8 (250-298)||(2482817-2482865)
chr8 (214-298)||(8629025-8629107)
chr8 (262-298)||(10437849-10437884)
chr8 (210-242)||(10488404-10488436)
chr8 (206-289)||(14482110-14482193)
chr8 (245-288)||(26820145-26820189)
chr8 (221-300)||(38874569-38874648)
chr8 (30-82)||(39881650-39881702)
chr8 (30-98)||(43208085-43208153)
chr8 (262-298)||(45071166-45071202)
[»] scaffold0004 (1 HSPs)
scaffold0004 (245-298)||(375240-375292)


Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 105 - 296
Target Start/End: Complemental strand, 19429751 - 19429560
Alignment:
Q  105 atttccataagctctccaggatagcttatatcaaaacaatttgactattttatcttatattatagaaatgggcttgtatggataaatagcttagttaagc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19429751 atttccataagctctccaggatagcttatatcaaaacaatttgactattttatcttatattatagaaatgggcttgtatggataaatagcttagttaagc 19429652  T
Q  205 acttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgacaaagataaaataaagtcaaactgtttttatataag 296  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  19429651 acttatagcataagcgtttatcggataagtgtttatgttttaagttatttcgatgacaaagataaaataaagtcaaactgtttttatataag 19429560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 10 - 117
Target Start/End: Complemental strand, 19429870 - 19429763
Alignment:
Q  10 atggacatcatgtttggatcgacttattagaacttatctactcacataagcacatgtgagattgtttggaagatcttataaaaacagctcattacatttc 109  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |    
T  19429870 atggacatcatgtttggatcgacttatttgaacttatctactcgcataagcacatgtgagattgtttggaagatcttacaaaaacagctcattacattgc 19429771  T
Q  110 cataagct 117  Q
    ||||||||    
T  19429770 cataagct 19429763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 208 - 298
Target Start/End: Complemental strand, 4663856 - 4663766
Alignment:
Q  208 tatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgacaaag-ataaaataaagtcaaactgtttttatataagct 298  Q
    ||||||||| |||||||||||||||||| ||||| | |||||||||||||| |||||| ||||||| ||| |||||| ||||||||||||||    
T  4663856 tatagcatatgcgtttatcgtataagtgcttatg-tataagttatttctataacaaagaataaaatgaagccaaactatttttatataagct 4663766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 127
Target Start/End: Original strand, 3639099 - 3639194
Alignment:
Q  32 cttattagaacttatctactcacataagcacatgtgagattgtttggaagatcttataaaaacagctcattacatttccataagctctccaggata 127  Q
    |||||| || |||||||||  |||||||||| ||||||||| ||||||||| || ||| |||||||| || |||  ||||||||||||||| ||||    
T  3639099 cttatttgagcttatctaccgacataagcacctgtgagattatttggaagagctgatagaaacagcttatgacaagtccataagctctccaagata 3639194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 195 - 292
Target Start/End: Complemental strand, 46019799 - 46019702
Alignment:
Q  195 ttagttaagcacttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgac-aaagataaaataaagtcaaactgtttttata 292  Q
    |||||||||||||||||| ||||||| | ||  |||||||||||||| | |||| ||||||||  || ||||| ||||||||| |||||||||||||||    
T  46019799 ttagttaagcacttatagtataagcgataattatataagtgtttatg-tgtaagctatttctagaacaaaagaaaaaataaagccaaactgtttttata 46019702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 281
Target Start/End: Complemental strand, 3249875 - 3249801
Alignment:
Q  207 ttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatga-caaagataaaataaagtcaaa 281  Q
    |||||||||||||| ||||| ||||||||| |||| | ||||||||||||||||  |||||| |||||||||||||    
T  3249875 ttatagcataagcgcttatcatataagtgtgtatg-tgtaagttatttctatgataaaagatgaaataaagtcaaa 3249801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 296
Target Start/End: Complemental strand, 46013406 - 46013372
Alignment:
Q  262 aaagataaaataaagtcaaactgtttttatataag 296  Q
    |||||||||||||||||||||||||||||||||||    
T  46013406 aaagataaaataaagtcaaactgtttttatataag 46013372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 96
Target Start/End: Complemental strand, 1017176 - 1017103
Alignment:
Q  23 ttggatcgacttattagaacttatctactcacataagcacatgtgagattgtttggaagatcttataaaaacag 96  Q
    |||||| |||||||| || || ||||||| |||||| ||| ||||||| ||||||||||| |||||| ||||||    
T  1017176 ttggattgacttatttgagctaatctactgacataaacacttgtgagactgtttggaagaacttatagaaacag 1017103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 298
Target Start/End: Original strand, 44319861 - 44319949
Alignment:
Q  209 atagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgacaaagataaaataaagtcaaactgtttttatataagct 298  Q
    |||||||||||  ||||| |||||||| | |||| | || | |||||||| | ||||||||||||||||| ||||||||| |||||||||    
T  44319861 atagcataagcacttatcatataagtgctcatgtataaact-atttctataaaaaagataaaataaagtcgaactgttttcatataagct 44319949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 262 - 295
Target Start/End: Original strand, 46247182 - 46247215
Alignment:
Q  262 aaagataaaataaagtcaaactgtttttatataa 295  Q
    ||||||||||||||||||||||||||||||||||    
T  46247182 aaagataaaataaagtcaaactgtttttatataa 46247215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 250 - 298
Target Start/End: Complemental strand, 54325156 - 54325107
Alignment:
Q  250 tatttctatgacaaa-gataaaataaagtcaaactgtttttatataagct 298  Q
    ||||||||| ||||| |||||||||||||||||||||||| |||||||||    
T  54325156 tatttctattacaaaagataaaataaagtcaaactgttttcatataagct 54325107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 252 - 296
Target Start/End: Original strand, 56007639 - 56007684
Alignment:
Q  252 tttctatgacaaa-gataaaataaagtcaaactgtttttatataag 296  Q
    ||||||||||||| || |||||||||||||||||||||||||||||    
T  56007639 tttctatgacaaaagaaaaaataaagtcaaactgtttttatataag 56007684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 4684299 - 4684243
Alignment:
Q  178 ttgtatggataaatagcttagttaagcacttatagcataagcgtttatcgtataagt 234  Q
    |||| ||||||||||||||| |||||||||| || |||||| ||||||| |||||||    
T  4684299 ttgtttggataaatagcttaattaagcacttctatcataagtgtttatcatataagt 4684243  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 298
Target Start/End: Original strand, 30024609 - 30024700
Alignment:
Q  207 ttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgacaaa-gataaaataaagtcaaactgtttttatataagct 298  Q
    |||||| | ||||||||||| |||||||  |||||  | ||||||||||||| ||||| ||||||||||||| ||| |||||| |||||||||    
T  30024609 ttatagtagaagcgtttatcatataagtacttatgcat-aagttatttctataacaaaagataaaataaagtaaaattgttttcatataagct 30024700  T

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Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 298
Target Start/End: Complemental strand, 43372075 - 43372039
Alignment:
Q  262 aaagataaaataaagtcaaactgtttttatataagct 298  Q
    |||||||||||| ||||||||||||||||||||||||    
T  43372075 aaagataaaatacagtcaaactgtttttatataagct 43372039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 298
Target Start/End: Original strand, 49219032 - 49219139
Alignment:
Q  191 tagcttagttaagcacttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgacaaag-ataaaataaagtcaaactgttttt 289  Q
    |||||||||||||  ||||||||||  ||| ||||| ||| |||| ||| || | ||||||||||||| |||||  |||||||||||||||| | ||||     
T  49219032 tagcttagttaagtgcttatagcattggcgcttatcatatgagtggttaggtat-aagttatttctataacaaaatataaaataaagtcaaattattttc 49219130  T
Q  290 atataagct 298  Q
    |||||||||    
T  49219131 atataagct 49219139  T

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Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 296
Target Start/End: Original strand, 23819013 - 23819087
Alignment:
Q  221 tttatcgtataagtgtttatgttttaagttatttctatgacaaagataaaataaagtcaaactgtttttatataag 296  Q
    |||||| || |||||||||||| | |||||||||| || ||||| |||||||  |||||||||||||| |||||||    
T  23819013 tttatcatacaagtgtttatgtat-aagttatttccataacaaatataaaatgtagtcaaactgttttcatataag 23819087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 28615485 - 28615391
Alignment:
Q  20 tgtttggatcgacttattagaacttatctactcacataagcacatgtgagattgtttggaagatcttataaaaacagctcattacatttccataag 115  Q
    ||||||||| ||||||||  |  |||||||||  ||||| ||| ||||||||||||||| ||| ||||| ||||||||| || |||||| ||||||    
T  28615485 tgtttggattgacttatttaagtttatctactagcataaacacttgtgagattgtttgg-agaacttatgaaaacagctaatgacattttcataag 28615391  T

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Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 298
Target Start/End: Complemental strand, 2883972 - 2883938
Alignment:
Q  264 agataaaataaagtcaaactgtttttatataagct 298  Q
    ||||||||||||||||||| |||||||||||||||    
T  2883972 agataaaataaagtcaaacagtttttatataagct 2883938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 288
Target Start/End: Original strand, 4191657 - 4191730
Alignment:
Q  216 aagcgtttatcgtataagtgtttatgttttaagttatttctatgacaaa-gataaaa-taaagtcaaactgtttt 288  Q
    ||||||||||| |||||||| |||||| | ||| ||||||||| ||||| ||||||| |||||||||||||||||    
T  4191657 aagcgtttatcatataagtgcttatgtat-aagctatttctataacaaaagataaaaataaagtcaaactgtttt 4191730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 298
Target Start/End: Original strand, 21157655 - 21157768
Alignment:
Q  185 gataaatagcttagttaagcacttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgacaaag-ataaaataaagtcaaact 283  Q
    |||||||| |||| |||||||||| || || ||| ||||||| |||||||| |||||| | | | |||||  || |||||| ||||| ||||||||||||    
T  21157655 gataaataacttaattaagcacttgtatcagaagtgtttatcatataagtgcttatgtatca-gctattttgataacaaagtataaactaaagtcaaact 21157753  T
Q  284 gtttttatataagct 298  Q
    ||||| || ||||||    
T  21157754 gttttcatgtaagct 21157768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 22239470 - 22239584
Alignment:
Q  19 atgtttggatcgacttattagaacttatctactcacataagcacatgtgagattgtttggaagatcttataaaaacagctcattacatttccataagctc 118  Q
    ||||| |||| || ||||| ||||||||||||| ||| |||||| ||||||| | |||| ||||   || | |||||||| || | || ||  |||||||    
T  22239470 atgttaggattgaattattcgaacttatctactgacacaagcacttgtgagactatttgaaagagtgtagataaacagcttatgaaatgtctttaagctc 22239569  T
Q  119 tccaggatagcttat 133  Q
    |||||||||||||||    
T  22239570 tccaggatagcttat 22239584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 288
Target Start/End: Original strand, 23815314 - 23815360
Alignment:
Q  243 tttaagttatttctatgacaaa-gataaaataaagtcaaactgtttt 288  Q
    |||||||||||||||| ||||| |||||||||| |||||||||||||    
T  23815314 tttaagttatttctataacaaaagataaaataatgtcaaactgtttt 23815360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 46860066 - 46860012
Alignment:
Q  23 ttggatcgacttattagaacttatctactcacataagcacatgtgagattgtttg 77  Q
    |||||| |||||||| ||||||||||| |||||||||||| ||||| | ||||||    
T  46860066 ttggattgacttatttgaacttatctattcacataagcacttgtgaaactgtttg 46860012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 54327573 - 54327519
Alignment:
Q  245 taagttatttctatgacaaa-gataaaataaagtcaaactgtttttatataagct 298  Q
    |||||| ||||||| ||||| ||||||| |||||||||||||||| |||||||||    
T  54327573 taagttgtttctataacaaaagataaaacaaagtcaaactgttttcatataagct 54327519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 133
Target Start/End: Complemental strand, 7730750 - 7730638
Alignment:
Q  20 tgtttggatcgacttattagaacttatctactcacataagcacatgtgagattgtttggaagatcttataaaaacagctcattacatttccataagctct 119  Q
    |||||||||||||||||| || || ||||| | |||||| |||  |||||| | ||| | ||| ||||   ||||| || || |||| ||||||||||||    
T  7730750 tgtttggatcgacttatttgagct-atctaatgacataaacacgcgtgagactattttggagagcttaaggaaacaacttatgacatgtccataagctct 7730652  T
Q  120 ccaggatagcttat 133  Q
    ||||||||||||||    
T  7730651 ccaggatagcttat 7730638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 295
Target Start/End: Complemental strand, 7749267 - 7749155
Alignment:
Q  183 tggataaatagcttagttaagcacttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatga-caaagataaaataaagtcaaa 281  Q
    |||||||| | ||||  ||||| ||||||||||||| ||||| | |||||||||||||| | || | ||||||||| |  ||||| |||||||| || ||    
T  7749267 tggataaacaacttaactaagctcttatagcataagtgtttaccatataagtgtttatg-tatacgctatttctataataaaagagaaaataaaatcgaa 7749169  T
Q  282 ctgtttttatataa 295  Q
    || |||||||||||    
T  7749168 ctatttttatataa 7749155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 117
Target Start/End: Complemental strand, 21157907 - 21157822
Alignment:
Q  32 cttattagaacttatctactcacataagcacatgtgagattgtttggaagatcttataaaaacagctcattacatttccataagct 117  Q
    |||||| || || ||||||| |||||||||| ||| ||| ||||||||||| |||| | |||||||| || |||||| || |||||    
T  21157907 cttatttgagctcatctactgacataagcacttgtaagactgtttggaagagcttacagaaacagcttatgacatttacaaaagct 21157822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 295
Target Start/End: Original strand, 50745964 - 50745997
Alignment:
Q  262 aaagataaaataaagtcaaactgtttttatataa 295  Q
    |||||||||||||| |||||||||||||||||||    
T  50745964 aaagataaaataaaatcaaactgtttttatataa 50745997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 51555712 - 51555757
Alignment:
Q  43 ttatctactcacataagcacatgtgagattgtttggaagatcttat 88  Q
    |||||||||||||||||||| | ||||||||||| ||||| |||||    
T  51555712 ttatctactcacataagcacttatgagattgtttagaagagcttat 51555757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 56249631 - 56249578
Alignment:
Q  64 tgtgagattgtttggaagatcttataaaaacagctcattacatttccataagct 117  Q
    ||||||||||||||||| | ||||| ||||||||| || |||||| ||||||||    
T  56249631 tgtgagattgtttggaacaacttatcaaaacagcttatgacattttcataagct 56249578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 298
Target Start/End: Original strand, 927440 - 927476
Alignment:
Q  262 aaagataaaataaagtcaaactgtttttatataagct 298  Q
    |||||| |||||||||||||||||||| |||||||||    
T  927440 aaagatgaaataaagtcaaactgttttcatataagct 927476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 290
Target Start/End: Original strand, 3662312 - 3662340
Alignment:
Q  262 aaagataaaataaagtcaaactgttttta 290  Q
    |||||||||||||||||||||||||||||    
T  3662312 aaagataaaataaagtcaaactgttttta 3662340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 13126538 - 13126582
Alignment:
Q  64 tgtgagattgtttggaagatcttataaaaacagctcattacattt 108  Q
    ||||||| ||||||||||| ||||||||||||||| || ||||||    
T  13126538 tgtgagactgtttggaagaacttataaaaacagcttatgacattt 13126582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 25717744 - 25717676
Alignment:
Q  20 tgtttggatcgacttattagaacttatctactcacataagcacatgtgagattgtttggaagatcttat 88  Q
    ||||||||| | |||||| || ||||| |||  |||||||||| ||||| ||||||||||||| |||||    
T  25717744 tgtttggattgtcttatttgagcttatgtaccgacataagcacttgtgaaattgtttggaagagcttat 25717676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 298
Target Start/End: Original strand, 27623599 - 27623635
Alignment:
Q  262 aaagataaaataaagtcaaactgtttttatataagct 298  Q
    |||||||||||||||||||||| |||| |||||||||    
T  27623599 aaagataaaataaagtcaaactattttaatataagct 27623635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 297
Target Start/End: Original strand, 32724070 - 32724118
Alignment:
Q  250 tatttctatgacaaa-gataaaataaagtcaaactgtttttatataagc 297  Q
    ||||||||| ||||| ||||||||||||||||||| |||| ||||||||    
T  32724070 tatttctattacaaaagataaaataaagtcaaactattttcatataagc 32724118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 21872213 - 21872327
Alignment:
Q  19 atgtttggatcgacttattagaacttatctactcacataagcacatgtgagattgtttggaagatcttataaaaacagctcattacatttccataagctc 118  Q
    ||||||||||  ||||||| || |||||||||| |||||||||| ||||||| ||||||||| | ||| | |||| |||| || |||| ||||||| ||     
T  21872213 atgtttggattaacttatttgatcttatctactgacataagcacttgtgagactgtttggaaaagcttttgaaaatagcttatgacatgtccataaactt 21872312  T
Q  119 tccaggatagcttat 133  Q
    |||||||||||||||    
T  21872313 tccaggatagcttat 21872327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 24624363 - 24624267
Alignment:
Q  18 catgtttggatcgacttattagaacttatctactcacataagcacatgtgagattgtttggaagatcttataaaaacagctcattacatttccataa 114  Q
    ||||| ||||| | |||| | |||||||||||||||||| ||||| ||| ||| ||||||||||| ||||| ||||||||| || |||| |||||||    
T  24624363 catgtgtggattggcttagttgaacttatctactcacattagcacttgtaagactgtttggaagagcttatgaaaacagcttatgacatgtccataa 24624267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 186 - 295
Target Start/End: Original strand, 54775016 - 54775125
Alignment:
Q  186 ataaatagcttagttaagcacttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgacaaa-gataaaataaagtcaaactg 284  Q
    ||||| |||||| |||| ||| ||||||||||  | ||||| || ||||| ||| |||| ||||||||||||| ||||| ||||||||||||||||||      
T  54775016 ataaacagcttaattaaccacatatagcataaatgattatcataaaagtgcttacgttt-aagttatttctataacaaaagataaaataaagtcaaacca 54775114  T
Q  285 tttttatataa 295  Q
    |||||||||||    
T  54775115 tttttatataa 54775125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 228 - 288
Target Start/End: Complemental strand, 3015988 - 3015929
Alignment:
Q  228 tataagtgtttatgttttaagttatttctatgacaaagataaaataaagtcaaactgtttt 288  Q
    |||||||| |||||| |||| |||||||||| ||||||||||||| |||||||||||||||    
T  3015988 tataagtgcttatgtattaa-ttatttctataacaaagataaaatgaagtcaaactgtttt 3015929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 296
Target Start/End: Complemental strand, 31337507 - 31337473
Alignment:
Q  262 aaagataaaataaagtcaaactgtttttatataag 296  Q
    |||||||||||||||||||||||||||||||||||    
T  31337507 aaagataaaataaagtcaaactgtttttatataag 31337473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 298
Target Start/End: Original strand, 32703025 - 32703138
Alignment:
Q  185 gataaatagcttagttaagcacttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgacaaa-gataaaataaagtcaaact 283  Q
    |||||| | ||||||||||| | |||||||||  | |||||| ||||| ||||||||| | ||| ||||||||| | ||| ||||||||||| ||||| |    
T  32703025 gataaacaacttagttaagcgcatatagcatatccatttatcatataaatgtttatgtat-aagctatttctattataaaagataaaataaactcaaatt 32703123  T
Q  284 gtttttatataagct 298  Q
    ||||| |||||||||    
T  32703124 gttttcatataagct 32703138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 49587040 - 49586986
Alignment:
Q  245 taagttatttctatgacaaa-gataaaataaagtcaaactgtttttatataagct 298  Q
    |||| ||||||||| ||||| |||||||||||||||||||||||| |||||||||    
T  49587040 taagctatttctataacaaaagataaaataaagtcaaactgttttcatataagct 49586986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 275
Target Start/End: Complemental strand, 16790249 - 16790181
Alignment:
Q  207 ttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgac-aaagataaaataaa 275  Q
    |||||||||||||||||||| |||||||| ||||  | |||||||||||||| || ||||||||||||||    
T  16790249 ttatagcataagcgtttatcatataagtgcttat-atataagttatttctataacaaaagataaaataaa 16790181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 298
Target Start/End: Complemental strand, 21862345 - 21862245
Alignment:
Q  199 ttaagcacttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgac-aaagataaaata-aagtcaaactgtttttatataag 296  Q
    ||||||||||||||||||| |||||||| |||||||| ||  | | |||| | ||||||| || |||||||||||| |||||||| |||||| |||||||    
T  21862345 ttaagcacttatagcataaacgtttatcttataagtgcttgcg-tataagctgtttctattacaaaagataaaatacaagtcaaattgttttcatataag 21862247  T
Q  297 ct 298  Q
    ||    
T  21862246 ct 21862245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 294
Target Start/End: Original strand, 38462205 - 38462277
Alignment:
Q  222 ttatcgtataagtgtttatgttttaagttatttctatgacaaa-gataaaataaagtcaaactgtttttatata 294  Q
    ||||| ||||||||||||| || |||| |||||||||  |||| |||||||||||||||||||||||| |||||    
T  38462205 ttatcatataagtgtttat-ttataagctatttctataccaaaagataaaataaagtcaaactgttttcatata 38462277  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 148
Target Start/End: Original strand, 21131537 - 21131577
Alignment:
Q  108 tccataagctctccaggatagcttatatcaaaacaatttga 148  Q
    ||||||||||||||| |||||||||||||||||| ||||||    
T  21131537 tccataagctctccaagatagcttatatcaaaaccatttga 21131577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 25459549 - 25459625
Alignment:
Q  20 tgtttggatcgacttattagaacttatctactcacataagcacatgtgagattgtttggaagatcttataaaaacag 96  Q
    ||||||||| || ||||| || |||||| |||  ||||||||| ||||||||||||||||||| |||| | ||||||    
T  25459549 tgtttggattgatttatttgagcttatcaactagcataagcacttgtgagattgtttggaagagcttagagaaacag 25459625  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 278
Target Start/End: Complemental strand, 27888768 - 27888693
Alignment:
Q  204 cacttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgac-aaagataaaataaagtc 278  Q
    ||||||||||||||||||||||| ||||| | |||||||  || | ||||| ||| || |||||||||||||||||    
T  27888768 cacttatagcataagcgtttatcatataattatttatgtaataggctatttgtataacaaaagataaaataaagtc 27888693  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 298
Target Start/End: Complemental strand, 905161 - 905040
Alignment:
Q  177 cttgtatggataaatagcttagttaagcacttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgacaaa-gataaaataaa 275  Q
    ||||| || ||||||||||||  ||||| ||| |||||||||| | |||| |||||| | ||| || | ||| ||||||||| ||||| |||||||||||    
T  905161 cttgtttgcataaatagcttaagtaagcgcttttagcataagcctatatcatataagcgcttaagtat-aagctatttctataacaaaagataaaataaa 905063  T
Q  276 gtcaaactgtttttatataagct 298  Q
    |||||  |||||  |||||||||    
T  905062 gtcaatttgtttgcatataagct 905040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 296
Target Start/End: Original strand, 1816547 - 1816581
Alignment:
Q  262 aaagataaaataaagtcaaactgtttttatataag 296  Q
    |||||||||||||||||||||||||||| ||||||    
T  1816547 aaagataaaataaagtcaaactgtttttgtataag 1816581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 24887407 - 24887353
Alignment:
Q  245 taagttatttctatgacaa-agataaaataaagtcaaactgtttttatataagct 298  Q
    |||| ||||||||| |||| |||||||||||||||||||||| || |||||||||    
T  24887407 taagctatttctataacaatagataaaataaagtcaaactgtattcatataagct 24887353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 26603344 - 26603286
Alignment:
Q  20 tgtttggatcgacttattagaacttatctactcacataagcacatgtgagattgtttgg 78  Q
    ||||||||| |||| ||| ||| ||| |||||  |||||||||||||||||||||||||    
T  26603344 tgtttggattgactgatttgaatttacctactgtcataagcacatgtgagattgtttgg 26603286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 298
Target Start/End: Original strand, 47584382 - 47584474
Alignment:
Q  206 cttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgacaaa-gataaaataaagtcaaactgtttttatataagct 298  Q
    |||||||||| | | |||||| ||||||  ||||||| | ||| ||||||||||||||| | |||||||||||||||| ||||| || ||||||    
T  47584382 cttatagcattaacttttatcatataaggttttatgtgt-aagctatttctatgacaaaaggtaaaataaagtcaaaccgttttaatgtaagct 47584474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 171
Target Start/End: Original strand, 52323929 - 52323990
Alignment:
Q  110 cataagctctccaggatagcttatatcaaaacaatttgac--tattttatcttatattatagaa 171  Q
    ||||||||||||| |||||||  |||||||||||||||||  ||||||||||| ||| ||||||    
T  52323929 cataagctctccaagatagct--tatcaaaacaatttgaccttattttatcttttatcatagaa 52323990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 298
Target Start/End: Original strand, 2201092 - 2201128
Alignment:
Q  262 aaagataaaataaagtcaaactgtttttatataagct 298  Q
    |||||||||| |||||||||||||||| |||||||||    
T  2201092 aaagataaaacaaagtcaaactgttttcatataagct 2201128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 296
Target Start/End: Complemental strand, 10101600 - 10101548
Alignment:
Q  245 taagttatttctatgacaaa-gataaaataaagtcaaactgtttttatataag 296  Q
    |||||||||||||| ||||| ||||||||||||| ||| |||||| |||||||    
T  10101600 taagttatttctataacaaaagataaaataaagttaaattgttttcatataag 10101548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 296
Target Start/End: Complemental strand, 10212525 - 10212473
Alignment:
Q  245 taagttatttctatgacaaa-gataaaataaagtcaaactgtttttatataag 296  Q
    |||||||||||||| ||||| ||||||||||||| ||| |||||| |||||||    
T  10212525 taagttatttctataacaaaagataaaataaagttaaattgttttcatataag 10212473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 296
Target Start/End: Original strand, 22232772 - 22232824
Alignment:
Q  245 taagttatttctatgacaaa-gataaaataaagtcaaactgtttttatataag 296  Q
    |||| ||||| ||| ||||| |||||||||||||||||||||||| |||||||    
T  22232772 taagctatttatataacaaatgataaaataaagtcaaactgttttcatataag 22232824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 133
Target Start/End: Original strand, 24158531 - 24158559
Alignment:
Q  105 atttccataagctctccaggatagcttat 133  Q
    |||||||||||||||||||||||||||||    
T  24158531 atttccataagctctccaggatagcttat 24158559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 32069097 - 32069133
Alignment:
Q  245 taagttatttctatgacaaagataaaataaagtcaaa 281  Q
    |||||||||||||| | ||||||||||||||||||||    
T  32069097 taagttatttctataaaaaagataaaataaagtcaaa 32069133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 298
Target Start/End: Original strand, 42808943 - 42808979
Alignment:
Q  262 aaagataaaataaagtcaaactgtttttatataagct 298  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  42808943 aaagataaaataaagttaaattgtttttatataagct 42808979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 298
Target Start/End: Complemental strand, 43116589 - 43116498
Alignment:
Q  207 ttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgac-aaagataaaataaagtcaaactgtttttatataagct 298  Q
    |||||||||||  ||||||| || ||||||||||| | |||| ||||||||| || ||||||||||| || ||||||  |||| |||||||||    
T  43116589 ttatagcataaatgtttatcatacaagtgtttatg-tgtaagctatttctataacaaaagataaaatcaaatcaaacaattttcatataagct 43116498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 45590802 - 45590734
Alignment:
Q  20 tgtttggatcgacttattagaacttatctactcacataagcacatgtgagattgtttggaagatcttat 88  Q
    |||||| || ||||| || |||||||||||||  ||||||||| ||||||| ||||||| ||| |||||    
T  45590802 tgtttgaattgacttttttgaacttatctactagcataagcacttgtgagactgtttgggagagcttat 45590734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 298
Target Start/End: Original strand, 48397610 - 48397646
Alignment:
Q  262 aaagataaaataaagtcaaactgtttttatataagct 298  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  48397610 aaagataaaataaagtcaaattgtttttatttaagct 48397646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 49586975 - 49587034
Alignment:
Q  116 ctctccaggatagcttatatcaaaacaatttgac--tattttatcttatattatagaaat 173  Q
    ||||||| |||||||||||| |||||| ||||||  ||||||||||| | ||||||||||    
T  49586975 ctctccaagatagcttatatgaaaacagtttgactttattttatcttttgttatagaaat 49587034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 183 - 297
Target Start/End: Complemental strand, 1259 - 1145
Alignment:
Q  183 tggataaatagcttagttaagcacttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgac-aaagataaaataaagtcaaa 281  Q
    |||||||| | |||| ||||| ||||||||||||| ||| |||| |||||||| ||||| | |||| ||||||||| || ||||||||||||||||||||    
T  1259 tggataaacaacttaattaagtacttatagcataaacgtctatcatataagtgcttatg-tataagctatttctataacaaaagataaaataaagtcaaa 1161  T
Q  282 ctgtttttatataagc 297  Q
    || || | ||||||||    
T  1160 ctattctcatataagc 1145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 183 - 297
Target Start/End: Original strand, 2716 - 2830
Alignment:
Q  183 tggataaatagcttagttaagcacttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgac-aaagataaaataaagtcaaa 281  Q
    |||||||| | |||| ||||| ||||||||||||| ||| |||| |||||||| ||||| | |||| ||||||||| || ||||||||||||||||||||    
T  2716 tggataaacaacttaattaagtacttatagcataaacgtctatcatataagtgcttatg-tataagctatttctataacaaaagataaaataaagtcaaa 2814  T
Q  282 ctgtttttatataagc 297  Q
    || || | ||||||||    
T  2815 ctattctcatataagc 2830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 245 - 298
Target Start/End: Original strand, 33234308 - 33234361
Alignment:
Q  245 taagttatttctatgacaaagataaaataaagtcaaactgtttttatataagct 298  Q
    ||||||||||||| |||||| ||||||| |||||||||||||||||||||||||    
T  33234308 taagttatttctacgacaaatataaaatgaagtcaaactgtttttatataagct 33234361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 298
Target Start/End: Complemental strand, 35135826 - 35135732
Alignment:
Q  204 cacttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgacaaa-gataaaataaagtcaaactgtttttatataagct 298  Q
    |||| |||||||||| | ||| | ||||||||||||||| | ||| ||||||||| ||||| ||||||||||||||||||| |||| |||||||||    
T  35135826 cactcatagcataagtgcttaacatataagtgtttatgtat-aagatatttctataacaaaagataaaataaagtcaaactattttcatataagct 35135732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 206 - 295
Target Start/End: Original strand, 6739780 - 6739869
Alignment:
Q  206 cttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgac-aaagataaaataaagtcaaactgtttttatataa 295  Q
    |||||| |||||||||||||| |||||| |||||||| | |||| |||||||| |  ||||||||||||||||||||||| ||| ||||||    
T  6739780 cttatatcataagcgtttatcatataagcgtttatgtat-aagtcatttctataaataaagataaaataaagtcaaactgatttgatataa 6739869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 38047796 - 38047911
Alignment:
Q  18 catgtttggatcgacttattagaacttatctactcacataagcacatgtgagattgtttggaagatcttataaaaacagctcattacatttccataagct 117  Q
    ||||||| ||| | |||| | |||||||||||||   ||||| || |||| || ||||||| ||| |||||  ||||| || || |||| ||||||||||    
T  38047796 catgtttagattggcttacttgaacttatctactattataagtacttgtgtgactgtttgggagagcttatggaaacaacttatgacatgtccataagct 38047895  T
Q  118 ctccaggatagcttat 133  Q
    ||||||||||||||||    
T  38047896 ctccaggatagcttat 38047911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 295
Target Start/End: Complemental strand, 20982297 - 20982208
Alignment:
Q  206 cttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgacaaa-gataaaataaagtcaaactgtttttatataa 295  Q
    ||||||||||||| | ||||| |||||||| ||||| | |||| ||||||||| ||||| |||||||||||||||| | ||||| ||||||    
T  20982297 cttatagcataagtgcttatcatataagtgcttatg-tataagctatttctataacaaaggataaaataaagtcaacccgttttcatataa 20982208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 14295457 - 14295506
Alignment:
Q  250 tatttctatgacaaa-gataaaataaagtcaaactgtttttatataagct 298  Q
    ||||||||| ||||| |||||||||||||||||||||||| |||||||||    
T  14295457 tatttctataacaaaagataaaataaagtcaaactgttttcatataagct 14295506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 117
Target Start/End: Complemental strand, 14331517 - 14331421
Alignment:
Q  20 tgtttggatcgacttattagaacttatctactcacataagcacatgtgagattgtttggaagatcttataaaaacagctcattacatttccataagct 117  Q
    ||||||||| |||||||| || ||||||||||  |||||||||   ||||||||||||||| | ||||  ||||||||| || |||| ||||||||||    
T  14331517 tgtttggattgacttatttgagcttatctactgtcataagcactcttgagattgtttggaaaaactta-caaaacagcttatgacatgtccataagct 14331421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 275
Target Start/End: Original strand, 26516183 - 26516275
Alignment:
Q  183 tggataaatagcttagttaagcacttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgac-aaagataaaataaa 275  Q
    |||||||| | |||| |||||| ||||||||||||||| ||||| |||||||| ||||| | |||| ||||||||  || ||||||||||||||    
T  26516183 tggataaacaacttaattaagcgcttatagcataagcgcttatcatataagtgcttatg-tataagctatttctaaaacaaaagataaaataaa 26516275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 16380639 - 16380686
Alignment:
Q  125 atagcttatatcaaaacaatttgactattttatcttatattatagaaat 173  Q
    ||||||||||||||| |||||||||||||||||||| | ||||||||||    
T  16380639 atagcttatatcaaaccaatttgactattttatctt-tgttatagaaat 16380686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 298
Target Start/End: Complemental strand, 583878 - 583843
Alignment:
Q  263 aagataaaataaagtcaaactgtttttatataagct 298  Q
    |||||||||||||||||||||||||| |||||||||    
T  583878 aagataaaataaagtcaaactgttttcatataagct 583843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 298
Target Start/End: Complemental strand, 29117051 - 29117000
Alignment:
Q  248 gttatttctatgacaaa-gataaaataaagtcaaactgtttttatataagct 298  Q
    ||||||||||| ||||| ||||||||||||||||||||||||  ||||||||    
T  29117051 gttatttctataacaaaagataaaataaagtcaaactgttttcgtataagct 29117000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 298
Target Start/End: Complemental strand, 32059694 - 32059659
Alignment:
Q  263 aagataaaataaagtcaaactgtttttatataagct 298  Q
    |||||||||||||||||||||||||| |||||||||    
T  32059694 aagataaaataaagtcaaactgttttcatataagct 32059659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 298
Target Start/End: Complemental strand, 32969242 - 32969187
Alignment:
Q  244 ttaagttatttctatgacaaa-gataaaataaagtcaaactgtttttatataagct 298  Q
    ||||||| ||||||| ||||| ||||||||||||||||| | ||||||||||||||    
T  32969242 ttaagttgtttctataacaaaagataaaataaagtcaaattatttttatataagct 32969187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 261 - 296
Target Start/End: Complemental strand, 41277457 - 41277422
Alignment:
Q  261 caaagataaaataaagtcaaactgtttttatataag 296  Q
    |||||||||||||||||||||||||||| |||||||    
T  41277457 caaagataaaataaagtcaaactgttttcatataag 41277422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 298
Target Start/End: Original strand, 465900 - 465954
Alignment:
Q  245 taagttatttctatgacaaa-gataaaataaagtcaaactgtttttatataagct 298  Q
    |||| ||||||||||||||| ||||||||||||| ||| ||||||| ||||||||    
T  465900 taagctatttctatgacaaaagataaaataaagttaaattgtttttgtataagct 465954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 295
Target Start/End: Complemental strand, 28586885 - 28586839
Alignment:
Q  250 tatttctatgacaaa-gataaaataaagtcaaactgtttttatataa 295  Q
    ||||||||| ||||| |||||||||||||||||||||||| ||||||    
T  28586885 tatttctataacaaaagataaaataaagtcaaactgttttcatataa 28586839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 36774735 - 36774778
Alignment:
Q  105 atttccataagctctccaggatagcttatatcaaaacaatttgact 150  Q
    ||||||||||||||||||||||||||||||  |||||| |||||||    
T  36774735 atttccataagctctccaggatagcttata--aaaacagtttgact 36774778  T

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Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 298
Target Start/End: Complemental strand, 18704221 - 18704106
Alignment:
Q  183 tggataaatagcttagttaagcacttatagcataagcgttta-tcgtataagtgtttatgttttaagttatttctatgacaaa-gataaaataaagtcaa 280  Q
    |||||||| | |||| |||||| ||| ||||||||| ||| | || |||||||  |||||| | ||||||||||||| ||||| |||||| |||||||||    
T  18704221 tggataaacaacttaattaagctcttgtagcataagtgttaaatcatataagttcttatgtat-aagttatttctataacaaaagataaa-taaagtcaa 18704124  T
Q  281 actgtttttatataagct 298  Q
     || ||||||||||||||    
T  18704123 gctatttttatataagct 18704106  T

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Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 298
Target Start/End: Original strand, 985597 - 985633
Alignment:
Q  262 aaagataaaataaagtcaaactgtttttatataagct 298  Q
    ||||||||||||||||||||||||||| | |||||||    
T  985597 aaagataaaataaagtcaaactgttttcacataagct 985633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 17369354 - 17369306
Alignment:
Q  20 tgtttggatcgacttattagaacttatctactcacataagcacatgtga 68  Q
    ||||||||| |||||||| ||||||||||||| |||||| ||| |||||    
T  17369354 tgtttggattgacttatttgaacttatctactgacataatcacttgtga 17369306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 315
Target Start/End: Complemental strand, 21782707 - 21782620
Alignment:
Q  230 taagtgtttatgttttaagttatttctatgacaaa-gataaaataaagtcaaactgttt-ttat-ataagctctcccaaacagtctcac 315  Q
    ||||||||||||||| ||| ||||||||| ||||| | ||||||||||||||| ||||| || | |||||||||| ||||||| |||||    
T  21782707 taagtgtttatgttt-aagctatttctataacaaaagctaaaataaagtcaaattgtttattgtcataagctctctcaaacagcctcac 21782620  T

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Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 133
Target Start/End: Complemental strand, 30217124 - 30217096
Alignment:
Q  105 atttccataagctctccaggatagcttat 133  Q
    |||||||||||||||||||||||||||||    
T  30217124 atttccataagctctccaggatagcttat 30217096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 298
Target Start/End: Original strand, 36539710 - 36539746
Alignment:
Q  262 aaagataaaataaagtcaaactgtttttatataagct 298  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  36539710 aaagataaaataaagtcaacctgttttcatataagct 36539746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 98
Target Start/End: Original strand, 38033956 - 38034024
Alignment:
Q  30 gacttattagaacttatctactcacataagcacatgtgagattgtttggaagatcttataaaaacagct 98  Q
    |||||||| || ||| ||||||  ||||||||| ||||||| |||||||||||  |||| |||||||||    
T  38033956 gacttatttgagcttttctactggcataagcacctgtgagactgtttggaagaagttattaaaacagct 38034024  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 39)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 222 - 298
Target Start/End: Original strand, 10143096 - 10143172
Alignment:
Q  222 ttatcgtataagtgtttatgttttaagttatttctatgacaaa-gataaaataaagtcaaactgtttttatataagct 298  Q
    |||||| ||||||| |||||| | ||||||||||||| ||||| |||||||| |||||||||||||||||||||||||    
T  10143096 ttatcgaataagtgcttatgtat-aagttatttctataacaaaagataaaattaagtcaaactgtttttatataagct 10143172  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 296
Target Start/End: Complemental strand, 42817538 - 42817448
Alignment:
Q  206 cttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgac-aaagataaaataaagtcaaactgtttttatataag 296  Q
    ||||||||||||||||||||| |||||||||| || || || |||||||||||  | ||||||||||| ||||||| ||||||| |||||||    
T  42817538 cttatagcataagcgtttatcatataagtgttgat-ttatatgttatttctataccaaaagataaaatgaagtcaagctgttttcatataag 42817448  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 28803451 - 28803557
Alignment:
Q  22 tttggatcgacttattagaacttatctactcacataagcacatgtgagattgtttggaagatcttataaaaacagctcattacatttccataagctctcc 121  Q
    ||||||| |||||||| || |||||||||   ||||||||||||||||| ||||||  ||| | |||  ||||| || || |||| ||||||||||||||    
T  28803451 tttggattgacttatttgagcttatctaccggcataagcacatgtgagactgtttgagagaacatatggaaacaacttatgacatgtccataagctctcc 28803550  T
Q  122 aggatag 128  Q
    |||||||    
T  28803551 aggatag 28803557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 298
Target Start/End: Original strand, 35459799 - 35459910
Alignment:
Q  187 taaatagcttagttaagcacttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgac-aaagataaaataaagtcaaactgt 285  Q
    ||||||||||| || ||| ||||||||||||| ||||||| |||||||| || || | |||| ||||| |||  | |||||||||||||||||||| |||    
T  35459799 taaatagcttaattcagctcttatagcataagtgtttatcatataagtgattttg-tataagctatttgtataccaaaagataaaataaagtcaaattgt 35459897  T
Q  286 ttttatataagct 298  Q
    |||  ||||||||    
T  35459898 tttcgtataagct 35459910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 293
Target Start/End: Original strand, 35809852 - 35809927
Alignment:
Q  217 agcgtttatcgtataagtgtttatgttttaagttatttctatgacaaagataaaataaagtcaaactgtttttatat 293  Q
    |||| ||||| |||||||| |||||| | |||||||||| ||||||||||||||||||| ||||| |||||| ||||    
T  35809852 agcgcttatcatataagtgcttatgtat-aagttatttccatgacaaagataaaataaaatcaaattgttttcatat 35809927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 240
Target Start/End: Complemental strand, 11393557 - 11393494
Alignment:
Q  177 cttgtatggataaatagcttagttaagcacttatagcataagcgtttatcgtataagtgtttat 240  Q
    ||||| |||||||| |||||| |||||||||||||||| ||| ||||||| |||||||| ||||    
T  11393557 cttgtttggataaacagcttaattaagcacttatagcacaagtgtttatcatataagtgcttat 11393494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 240
Target Start/End: Complemental strand, 11410218 - 11410155
Alignment:
Q  177 cttgtatggataaatagcttagttaagcacttatagcataagcgtttatcgtataagtgtttat 240  Q
    ||||| |||||||| |||||| |||||||||||||||| ||| ||||||| |||||||| ||||    
T  11410218 cttgtttggataaacagcttaattaagcacttatagcacaagtgtttatcatataagtgcttat 11410155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 298
Target Start/End: Original strand, 29430661 - 29430755
Alignment:
Q  203 gcacttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgacaaagataaaataaagtcaaactgtttttatataagct 298  Q
    |||||| ||| ||||||||||||| || ||| |||||||| | ||| ||||||||| |||||  | ||||||||||||||||||||  ||||||||    
T  29430661 gcacttgtagtataagcgtttatcatacaagggtttatgtat-aagctatttctataacaaaagttaaataaagtcaaactgttttcttataagct 29430755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 294
Target Start/End: Original strand, 18884766 - 18884878
Alignment:
Q  183 tggataaatagcttagttaagcacttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctat--gacaaagataaaataaagtcaa 280  Q
    |||||||| |||||| | ||||||||||||||| ||  |||||| |||||||| | ||| | ||||||||||||||   | ||| |||||||||| ||||    
T  18884766 tggataaacagcttaatcaagcacttatagcattagtttttatcatataagtgctcatg-tataagttatttctataaaaaaaatataaaataaaatcaa 18884864  T
Q  281 actgtttttatata 294  Q
    |||||||| |||||    
T  18884865 actgttttcatata 18884878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 298
Target Start/End: Original strand, 14209193 - 14209277
Alignment:
Q  214 ataagcgtttatcgtataagtgtttatgttttaagttatttctatgacaaa-gataaaataaagtcaaactgtttttatataagct 298  Q
    |||| |||||||| ||||||||||| ||| | ||| |||||| || ||||| ||||||||||| |||||||||||| |||||||||    
T  14209193 ataaacgtttatcatataagtgtttctgtct-aagctatttcaataacaaaagataaaataaattcaaactgttttcatataagct 14209277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 298
Target Start/End: Complemental strand, 17221714 - 17221610
Alignment:
Q  194 cttagttaagcacttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgac-aaagataaaataaagtcaaactgtttttata 292  Q
    |||| ||||||||||||||||||||| |||||| | |||||||||||| | |||  || ||  ||||| |||| ||||||||||||||| |||| | |||    
T  17221714 cttaattaagcacttatagcataagcctttatcatttaagtgtttatg-tataaactagtttaatgacaaaaggtaaaataaagtcaaattgttctcata 17221616  T
Q  293 taagct 298  Q
    ||||||    
T  17221615 taagct 17221610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 117
Target Start/End: Complemental strand, 18885018 - 18884921
Alignment:
Q  20 tgtttggatcgacttattagaacttatctactcacataagcacatgtgagattgtttggaagatcttataaaaacagctcattacatttccataagct 117  Q
    |||||||||||||||||| || | |||||| | ||||||| || ||| ||  ||||||| ||| |||||| |||||||| || |||||||||| ||||    
T  18885018 tgtttggatcgacttattcgagcgtatctattgacataagaacttgtaaggctgtttgggagagcttatagaaacagcttatgacatttccattagct 18884921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 281
Target Start/End: Original strand, 31461325 - 31461421
Alignment:
Q  185 gataaatagcttagttaagcacttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgacaaa-gataaaataaagtcaaa 281  Q
    |||||| | |||| |||||||||| |||||||| ||| |||| |||||||| |||| | | ||| ||||||||| ||||| |||||||||||||||||    
T  31461325 gataaacaacttaattaagcacttctagcataaacgtatatcatataagtggttatatat-aagctatttctataacaaaagataaaataaagtcaaa 31461421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 43456627 - 43456720
Alignment:
Q  21 gtttggatcgacttattagaacttatctactcacataagcacatgtgagattgtttggaagatcttataaaaacagctcattacatttccataa 114  Q
    ||||||||  ||||||| |||||||| ||||||||||| ||| ||| ||| |||||| |||| ||| | |||||| ||||| |||| |||||||    
T  43456627 gtttggatttacttatttgaacttatttactcacataaacacttgtaagactgtttgaaagagcttgtgaaaacaactcatgacatgtccataa 43456720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 298
Target Start/End: Complemental strand, 5043666 - 5043630
Alignment:
Q  262 aaagataaaataaagtcaaactgtttttatataagct 298  Q
    ||||||||||||||||||||||||||| |||||||||    
T  5043666 aaagataaaataaagtcaaactgttttcatataagct 5043630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 298
Target Start/End: Original strand, 43808485 - 43808576
Alignment:
Q  207 ttatagcataagcgtttatcgtataagtgtttatgttttaagtta-tttctatgacaaagataaaataaagtcaaactgtttttatataagct 298  Q
    ||||||||||||||  |||| |||||||||||||| | |||| || ||| ||| ||||| |||||||||||| ||||| |||| |||||||||    
T  43808485 ttatagcataagcgcgtatcatataagtgtttatg-tataagctattttttataacaaacataaaataaagttaaactattttcatataagct 43808576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 298
Target Start/End: Complemental strand, 7103588 - 7103553
Alignment:
Q  263 aagataaaataaagtcaaactgtttttatataagct 298  Q
    |||||||||||||||||||||||||| |||||||||    
T  7103588 aagataaaataaagtcaaactgttttaatataagct 7103553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 178 - 288
Target Start/End: Original strand, 15171130 - 15171240
Alignment:
Q  178 ttgtatggataaatagcttagttaagcacttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgaca-aagataaaataaag 276  Q
    |||| |||||||||| |||| |||||   |||||||||||||   |||  |||||||||||||| | |||||| ||||||| ||| |||||||| |||||    
T  15171130 ttgtttggataaataacttaattaagtgtttatagcataagctcgtattttataagtgtttatg-tataagttttttctataacagaagataaattaaag 15171228  T
Q  277 tcaaactgtttt 288  Q
    ||||| ||||||    
T  15171229 tcaaaatgtttt 15171240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 296
Target Start/End: Original strand, 33192144 - 33192191
Alignment:
Q  250 tatttctatgaca-aagataaaataaagtcaaactgtttttatataag 296  Q
    ||||||||| ||| |||||||||||||||||||||||||| |||||||    
T  33192144 tatttctataacataagataaaataaagtcaaactgttttcatataag 33192191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 298
Target Start/End: Original strand, 3458603 - 3458657
Alignment:
Q  245 taagttatttctatgacaaa-gataaaataaagtcaaactgtttttatataagct 298  Q
    |||||||||| ||| ||||| ||||||||||||||||||| |||| |||||||||    
T  3458603 taagttatttttataacaaaagataaaataaagtcaaacttttttcatataagct 3458657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 7103392 - 7103450
Alignment:
Q  20 tgtttggatcgacttattagaacttatctactcacataagcacatgtgagattgtttgg 78  Q
    ||||||||| |||||||| ||  ||||||| | |||| |||||||||||||||||||||    
T  7103392 tgtttggattgacttatttgagtttatctattgacatgagcacatgtgagattgtttgg 7103450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 17952825 - 17952771
Alignment:
Q  245 taagttatttctatgacaaa-gataaaataaagtcaaactgtttttatataagct 298  Q
    |||| ||||||||| ||||| ||||||||||||||||||| |||| |||||||||    
T  17952825 taagctatttctataacaaaagataaaataaagtcaaactattttcatataagct 17952771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 28803630 - 28803576
Alignment:
Q  245 taagttatttctatgacaaa-gataaaataaagtcaaactgtttttatataagct 298  Q
    ||||||||||| || ||||| |||||||||||||||||||| ||| |||||||||    
T  28803630 taagttatttcgataacaaaagataaaataaagtcaaactgatttcatataagct 28803576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 298
Target Start/End: Complemental strand, 31740091 - 31740029
Alignment:
Q  237 ttatgttttaagttatttctatgac-aaagataaaataaagtcaaactgtttttatataagct 298  Q
    |||||| | ||| ||||||||| || |||||||||||||||||||||| |||| |||||||||    
T  31740091 ttatgtataaagctatttctataactaaagataaaataaagtcaaactattttcatataagct 31740029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 287
Target Start/End: Complemental strand, 33576768 - 33576675
Alignment:
Q  194 cttagttaagcacttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgacaaa-gataaaataaagtcaaactgttt 287  Q
    ||||||||| ||||||||  |||||||| ||||  |||| || |||||| | | ||||||||||| ||||| |||| ||||||||||||||||||    
T  33576768 cttagttaaacacttataagataagcgtctatcacataaatgcttatgtat-aggttatttctataacaaaagatacaataaagtcaaactgttt 33576675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 225
Target Start/End: Original strand, 37474656 - 37474698
Alignment:
Q  183 tggataaatagcttagttaagcacttatagcataagcgtttat 225  Q
    ||||||||||||||| ||||||||||||||| |||| ||||||    
T  37474656 tggataaatagcttaattaagcacttatagcttaagtgtttat 37474698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 98
Target Start/End: Original strand, 42852633 - 42852699
Alignment:
Q  32 cttattagaacttatctactcacataagcacatgtgagattgtttggaagatcttataaaaacagct 98  Q
    |||||| |||||||||| ||  ||||||||| ||||||| ||||||||||| | ||| |||||||||    
T  42852633 cttatttgaacttatctgctggcataagcacttgtgagactgtttggaagagcctatgaaaacagct 42852699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 43199986 - 43199928
Alignment:
Q  20 tgtttggatcgacttattagaacttatctactcacataagcacatgtgagattgtttgg 78  Q
    |||||||||  | ||||| ||||||||||||||| |||||||| ||||||| |||||||    
T  43199986 tgtttggattcatttatttgaacttatctactcatataagcacttgtgagactgtttgg 43199928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 295
Target Start/End: Original strand, 13866853 - 13866886
Alignment:
Q  262 aaagataaaataaagtcaaactgtttttatataa 295  Q
    ||||||||||| ||||||||||||||||||||||    
T  13866853 aaagataaaattaagtcaaactgtttttatataa 13866886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 258
Target Start/End: Complemental strand, 15200512 - 15200440
Alignment:
Q  185 gataaatagcttagttaagcacttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctat 258  Q
    |||||| | |||| ||||||| ||||||||||| | ||||||||||||||| |||| | ||||| |||||||||    
T  15200512 gataaaaaacttaattaagcatttatagcataaccatttatcgtataagtgcttat-tcttaagctatttctat 15200440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 296
Target Start/End: Original strand, 5133718 - 5133770
Alignment:
Q  245 taagttatttctatgacaaa-gataaaataaagtcaaactgtttttatataag 296  Q
    |||| ||||||||| ||||| ||||||||||||  ||||||||||||||||||    
T  5133718 taagctatttctataacaaaagataaaataaagataaactgtttttatataag 5133770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 298
Target Start/End: Original strand, 6546942 - 6546978
Alignment:
Q  262 aaagataaaataaagtcaaactgtttttatataagct 298  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  6546942 aaagataaaataaagtcaaattgtttatatataagct 6546978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 298
Target Start/End: Original strand, 11513862 - 11513898
Alignment:
Q  262 aaagataaaataaagtcaaactgtttttatataagct 298  Q
    |||||||||||||||||||| |||||| |||||||||    
T  11513862 aaagataaaataaagtcaaattgttttcatataagct 11513898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 298
Target Start/End: Complemental strand, 18962144 - 18962108
Alignment:
Q  262 aaagataaaataaagtcaaactgtttttatataagct 298  Q
    |||||||||||||||| |||||||||| |||||||||    
T  18962144 aaagataaaataaagttaaactgttttcatataagct 18962108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 298
Target Start/End: Complemental strand, 29429863 - 29429827
Alignment:
Q  262 aaagataaaataaagtcaaactgtttttatataagct 298  Q
    ||||||||||||||||||||||||||| | |||||||    
T  29429863 aaagataaaataaagtcaaactgttttcacataagct 29429827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 31558873 - 31558833
Alignment:
Q  21 gtttggatcgacttattagaacttatctactcacataagca 61  Q
    ||||| ||||||||||| |||||||||||||| ||||||||    
T  31558873 gtttgaatcgacttatttgaacttatctactcccataagca 31558833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 298
Target Start/End: Original strand, 33942114 - 33942150
Alignment:
Q  262 aaagataaaataaagtcaaactgtttttatataagct 298  Q
    ||||||||||||||||||||||||||| || ||||||    
T  33942114 aaagataaaataaagtcaaactgttttcatgtaagct 33942150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 281
Target Start/End: Complemental strand, 38239725 - 38239638
Alignment:
Q  194 cttagttaagcacttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgac-aaagataaaataaagtcaaa 281  Q
    |||| |||||||||| ||||||||||  | ||| | |||||||||||| | |||| ||||||||| || ||||||||||| ||||||||    
T  38239725 cttaattaagcacttgtagcataagcactcatcatgtaagtgtttatg-tataagctatttctataacaaaagataaaatcaagtcaaa 38239638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 295
Target Start/End: Complemental strand, 43299508 - 43299476
Alignment:
Q  263 aagataaaataaagtcaaactgtttttatataa 295  Q
    ||||||||||||||||||||||||||| |||||    
T  43299508 aagataaaataaagtcaaactgtttttgtataa 43299476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 298
Target Start/End: Original strand, 49060429 - 49060540
Alignment:
Q  187 taaatagcttagttaagcacttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgacaaaga-taaaataaagtcaaactgt 285  Q
    |||| |||||| |||||||||||||| ||||  | ||||| ||||||| ||||||| | ||| ||||||||| ||||| | ||||||||||||||| | |    
T  49060429 taaacagcttaattaagcacttatagtataatggcttatcatataagtatttatgtat-aagctatttctataacaaaaaataaaataaagtcaaattat 49060527  T
Q  286 ttttatataagct 298  Q
    |||||||||||||    
T  49060528 ttttatataagct 49060540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 206 - 293
Target Start/End: Original strand, 47003995 - 47004082
Alignment:
Q  206 cttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgacaa-agataaaataaagtcaaactgtttttatat 293  Q
    ||||||||| ||  ||||||| ||||||||||||| | | ||| ||||||||| |||| |||||||||||||||||||| |||||||||    
T  47003995 cttatagcaaaaatgtttatcatataagtgtttatatgt-aagctatttctataacaatagataaaataaagtcaaactatttttatat 47004082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 296
Target Start/End: Original strand, 31338472 - 31338506
Alignment:
Q  262 aaagataaaataaagtcaaactgtttttatataag 296  Q
    |||||||||||||||||||||||||||||||||||    
T  31338472 aaagataaaataaagtcaaactgtttttatataag 31338506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 296
Target Start/End: Original strand, 31341079 - 31341192
Alignment:
Q  183 tggataaatagcttagttaagcacttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgacaaa-gataaaataaagtcaaa 281  Q
    |||||||| | |||| | |||| ||||| ||||||||| ||||| | ||| || |||||| | ||| ||||| ||| ||||| |||||||||||||||||    
T  31341079 tggataaacaacttaatcaagcgcttattgcataagcgcttatcatctaaatgcttatgtat-aagctatttgtataacaaaagataaaataaagtcaaa 31341177  T
Q  282 ctgtttttatataag 296  Q
    ||| |||||||||||    
T  31341178 ctggttttatataag 31341192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 296
Target Start/End: Original strand, 46531497 - 46531531
Alignment:
Q  262 aaagataaaataaagtcaaactgtttttatataag 296  Q
    |||||||||||||||||||||||||||||||||||    
T  46531497 aaagataaaataaagtcaaactgtttttatataag 46531531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 23215008 - 23214907
Alignment:
Q  18 catgtttggatcgacttattagaacttatctactcacataagcacatgtgagattgtttggaagatcttataaaaacagctcattacatttccataagct 117  Q
    ||||||||||| |||||||| || ||||||||||  ||||| ||| | ||||| ||||||  |||  |||| |||||| || || |||||||||||||||    
T  23215008 catgtttggattgacttatttgaccttatctactagcataaacacttatgagactgtttgagagaatttatgaaaacaacttatgacatttccataagct 23214909  T
Q  118 ct 119  Q
    ||    
T  23214908 ct 23214907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 298
Target Start/End: Complemental strand, 27481456 - 27481364
Alignment:
Q  206 cttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgacaaa-gataaaataaagtcaaactgtttttatataagct 298  Q
    ||||||||||||  ||||||  |||||||||||||| | |||| ||||||||| ||||| |||||||  ||||||||||||||  |||||||||    
T  27481456 cttatagcataaatgtttattatataagtgtttatg-tataagctatttctataacaaaggataaaacgaagtcaaactgtttccatataagct 27481364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 30751671 - 30751594
Alignment:
Q  19 atgtttggatcgacttattagaacttatctactcacataagcacatgtgagattgtttggaagatcttataaaaacag 96  Q
    ||||||||||  |||||||  |||||||||||| |||||||||| |||| || ||||||| ||| |||||| ||||||    
T  30751671 atgtttggattaacttatttaaacttatctactgacataagcacttgtgcgactgtttgggagagcttatagaaacag 30751594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 296
Target Start/End: Complemental strand, 819868 - 819832
Alignment:
Q  260 acaaagataaaataaagtcaaactgtttttatataag 296  Q
    ||||| |||||||||||||||||||||||||||||||    
T  819868 acaaatataaaataaagtcaaactgtttttatataag 819832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 293
Target Start/End: Original strand, 2223072 - 2223143
Alignment:
Q  222 ttatcgtataagtgtttatgttttaagttatttctatgac-aaagataaaataaagtcaaactgtttttatat 293  Q
    |||||||||||||||||||| | |||| ||||||||| || |||||||||  ||||||||| |||||||||||    
T  2223072 ttatcgtataagtgtttatg-tataagctatttctataacaaaagataaagaaaagtcaaattgtttttatat 2223143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 29363659 - 29363603
Alignment:
Q  20 tgtttggatcgacttattagaacttatctactcacataagcacatgtgagattgttt 76  Q
    ||||||||| | |||||| ||||||||||||| |||||||||| ||||||| |||||    
T  29363659 tgtttggattggcttatttgaacttatctactaacataagcacttgtgagactgttt 29363603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 296
Target Start/End: Complemental strand, 39591591 - 39591539
Alignment:
Q  245 taagttatttctatgacaaa-gataaaataaagtcaaactgtttttatataag 296  Q
    |||||||||||||| ||||| ||||||||||||||||| |||||| |||||||    
T  39591591 taagttatttctataacaaaagataaaataaagtcaaattgttttcatataag 39591539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 298
Target Start/End: Original strand, 22759069 - 22759186
Alignment:
Q  183 tggataaatagcttagttaagcacttatagcataagcgttt--atcgtataagtgtttatgttttaagttatttctatgacaaa-gataaaataaagtca 279  Q
    |||||||| | |||| |||||||||||||| |||| | |||  ||| |||||| |||||||||| ||| ||||| ||| ||||| ||||||||||||  |    
T  22759069 tggataaacaacttaattaagcacttatagtataaacatttttatcatataagcgtttatgttt-aagctatttgtataacaaaagataaaataaaggaa 22759167  T
Q  280 aactgtttttatataagct 298  Q
    || |||||| |||||||||    
T  22759168 aattgttttcatataagct 22759186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 298
Target Start/End: Original strand, 23918891 - 23918957
Alignment:
Q  232 agtgtttatgttttaagttatttctatgacaaa-gataaaataaagtcaaactgtttttatataagct 298  Q
    ||||||||||| | ||||||| ||||| ||||| ||||||||||||||||| |||||| |||||||||    
T  23918891 agtgtttatgtgt-aagttatctctattacaaaagataaaataaagtcaaattgttttcatataagct 23918957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 296
Target Start/End: Complemental strand, 5006615 - 5006581
Alignment:
Q  262 aaagataaaataaagtcaaactgtttttatataag 296  Q
    ||||||||||||||||||||||||||| |||||||    
T  5006615 aaagataaaataaagtcaaactgttttcatataag 5006581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 296
Target Start/End: Original strand, 25511520 - 25511625
Alignment:
Q  191 tagcttagttaagcacttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgac-aaagataaaataaagtcaaactgttttt 289  Q
    |||||||||||||| |||||||||||   | ||||| ||||||||||  || | ||| |||||||||| || |||||| ||||||||||||  | |||||    
T  25511520 tagcttagttaagctcttatagcatacaagcttatcatataagtgttgttg-tataaattatttctataacaaaagatgaaataaagtcaattttttttt 25511618  T
Q  290 atataag 296  Q
    |||||||    
T  25511619 atataag 25511625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 296
Target Start/End: Complemental strand, 45593903 - 45593791
Alignment:
Q  183 tggataaatagcttagttaagcacttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgacaaag-ataaaataaagtcaaa 281  Q
    ||||||||||||||| |||||  ||||| |  |||| ||||||| ||||| || |||||| | ||| ||||||| | |||||  ||||||||||||||||    
T  45593903 tggataaatagcttaattaagtgcttat-gtgtaagagtttatcatataaatgcttatgtat-aagctatttctgtaacaaaacataaaataaagtcaaa 45593806  T
Q  282 ctgtttttatataag 296  Q
    ||||||| |||||||    
T  45593805 ctgttttcatataag 45593791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 281
Target Start/End: Complemental strand, 1431470 - 1431395
Alignment:
Q  206 cttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatga-caaagataaaataaagtcaaa 281  Q
    ||||||||||||| | ||||| |||||||||||||| | ||||||||||| || |  ||| ||||||||||||||||    
T  1431470 cttatagcataagtgcttatcatataagtgtttatg-tataagttatttccataatgaaaaataaaataaagtcaaa 1431395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 298
Target Start/End: Complemental strand, 18749916 - 18749880
Alignment:
Q  262 aaagataaaataaagtcaaactgtttttatataagct 298  Q
    ||||||||| |||||||||||| ||||||||||||||    
T  18749916 aaagataaagtaaagtcaaactatttttatataagct 18749880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 298
Target Start/End: Original strand, 24975868 - 24975904
Alignment:
Q  262 aaagataaaataaagtcaaactgtttttatataagct 298  Q
    ||||||||||||||| | |||||||||||||||||||    
T  24975868 aaagataaaataaaggcgaactgtttttatataagct 24975904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 31002822 - 31002878
Alignment:
Q  42 cttatctactcacataagcacatgtgagattgtttggaagatcttataaaaacagct 98  Q
    ||||||||||  ||||||||  ||||||| |||||||| || |||||||||||||||    
T  31002822 cttatctactgtcataagcaattgtgagactgtttggatgagcttataaaaacagct 31002878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 296
Target Start/End: Original strand, 35536053 - 35536105
Alignment:
Q  245 taagttatttctatgaca-aagataaaataaagtcaaactgtttttatataag 296  Q
    |||| ||||||||| ||| ||||||||||||||||||| |||||| |||||||    
T  35536053 taagctatttctataacataagataaaataaagtcaaattgttttcatataag 35536105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 299
Target Start/End: Complemental strand, 47046229 - 47046177
Alignment:
Q  248 gttatttctatgacaaag-ataaaataaagtcaaactgtttttatataagctc 299  Q
    ||||||||||  |||||| |||||||||||||||| |||||| ||||||||||    
T  47046229 gttatttctacaacaaaggataaaataaagtcaaattgttttcatataagctc 47046177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 41)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 231 - 298
Target Start/End: Original strand, 15360827 - 15360894
Alignment:
Q  231 aagtgtttatgttttaagttatttctatgacaaa-gataaaataaagtcaaactgtttttatataagct 298  Q
    |||||||||||| ||| ||||||||||| ||||| |||||||||||||||||||||||| |||||||||    
T  15360827 aagtgtttatgtatta-gttatttctataacaaaagataaaataaagtcaaactgttttcatataagct 15360894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 286
Target Start/End: Original strand, 23895221 - 23895324
Alignment:
Q  183 tggataaatagcttagttaagcacttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgac-aaagataaaataaagtcaaa 281  Q
    ||||| |||| |||| ||||||||||| |||||||||  ||||| |||||||  ||||| | |||| ||||||||| || |||||||||||||| |||||    
T  23895221 tggatgaataacttaattaagcacttaaagcataagcccttatcatataagttattatg-tataagctatttctataacaaaagataaaataaattcaaa 23895319  T
Q  282 ctgtt 286  Q
    |||||    
T  23895320 ctgtt 23895324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 23373232 - 23373307
Alignment:
Q  20 tgtttggatcgacttattagaacttatctactcacataagcacatgtgagattgtttggaagatcttataaaaaca 95  Q
    |||||| || |||||||| |||||| |||||| | |||||||| ||||||||||||||| ||| |||||| |||||    
T  23373232 tgtttgaattgacttatttgaacttgtctactgatataagcacttgtgagattgtttgggagagcttatagaaaca 23373307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 6292643 - 6292585
Alignment:
Q  20 tgtttggatcgacttattagaacttatctactcacataagcacatgtgagattgtttgg 78  Q
    ||||||||| |||||||| || |||||||||| |||||||||| | |||||||||||||    
T  6292643 tgtttggattgacttatttgagcttatctactgacataagcacttttgagattgtttgg 6292585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 48830200 - 48830146
Alignment:
Q  245 taagttatttctatgac-aaagataaaataaagtcaaactgtttttatataagct 298  Q
    |||||||||||||| || |||||||||||||||||||||| |||| |||||||||    
T  48830200 taagttatttctattaccaaagataaaataaagtcaaactattttcatataagct 48830146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 288
Target Start/End: Original strand, 4338555 - 4338639
Alignment:
Q  205 acttatagcataagcgtttatcgtataagtg-tttatgttttaagttatttctatgaca-aagataaaataaagtcaaactgtttt 288  Q
    |||||||| ||||| ||||||| |||||||| ||||||| | ||||||| ||||  ||| ||||||||||||||||||||||||||    
T  4338555 acttatagtataagtgtttatcatataagtgctttatgtat-aagttatgtctagaacagaagataaaataaagtcaaactgtttt 4338639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 24460320 - 24460377
Alignment:
Q  20 tgtttggatcgacttattagaacttatctactcacataagcacatgtgagattgtttg 77  Q
    ||||||||| |||||||| ||||||||||||| |||| ||||| ||||||| ||||||    
T  24460320 tgtttggattgacttatttgaacttatctactgacatgagcacttgtgagactgtttg 24460377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 155
Target Start/End: Complemental strand, 26179513 - 26179464
Alignment:
Q  106 tttccataagctctccaggatagcttatatcaaaacaatttgactatttt 155  Q
    ||||||||| ||||||| ||||||||||||||||||||||| ||| ||||    
T  26179513 tttccataaactctccaagatagcttatatcaaaacaattttactttttt 26179464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 15581383 - 15581343
Alignment:
Q  42 cttatctactcacataagcacatgtgagattgtttggaaga 82  Q
    |||||||||| |||||||||| |||||||||||||||||||    
T  15581383 cttatctactgacataagcacttgtgagattgtttggaaga 15581343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 298
Target Start/End: Complemental strand, 40833941 - 40833905
Alignment:
Q  262 aaagataaaataaagtcaaactgtttttatataagct 298  Q
    |||||||||||||| ||||||||||||||||||||||    
T  40833941 aaagataaaataaaatcaaactgtttttatataagct 40833905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 298
Target Start/End: Original strand, 4200139 - 4200229
Alignment:
Q  208 tatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgacaaa-gataaaataaagtcaaactgtttttatataagct 298  Q
    ||||||||||||  ||||| | ||||||||||| | | ||||||||| ||| ||||| ||||||||||||||||  |||||| |||||||||    
T  4200139 tatagcataagcacttatcatctaagtgtttatatat-aagttatttttataacaaaagataaaataaagtcaagttgttttcatataagct 4200229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 242
Target Start/End: Complemental strand, 29794107 - 29794048
Alignment:
Q  183 tggataaatagcttagttaagcacttatagcataagcgtttatcgtataagtgtttatgt 242  Q
    |||||||| |||||| |||||| ||||||||||||| |||| || |||| ||||||||||    
T  29794107 tggataaacagcttaattaagcgcttatagcataagtgtttttcatatatgtgtttatgt 29794048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 46499902 - 46499972
Alignment:
Q  105 atttccataagctctccaggatagcttatatcaaaacaatttgac--tattttatcttatattatagaaat 173  Q
    |||| ||||||||||||| || |||||| || |||||||||||||  ||||||||||| | ||||||||||    
T  46499902 attttcataagctctccatgaaagcttaaataaaaacaatttgactttattttatcttttcttatagaaat 46499972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 242
Target Start/End: Complemental strand, 49365973 - 49365914
Alignment:
Q  183 tggataaatagcttagttaagcacttatagcataagcgtttatcgtataagtgtttatgt 242  Q
    |||||||| | ||||||||||| |||||||||||| |||||||  |||||||| ||||||    
T  49365973 tggataaacaacttagttaagcgcttatagcataaacgtttataatataagtgcttatgt 49365914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 213 - 298
Target Start/End: Original strand, 49516984 - 49517070
Alignment:
Q  213 cataagcgtttatcgtataagt-gtttatgttttaagttatttctatgacaaa-gataaaataaagtcaaactgtttttatataagct 298  Q
    |||||||||||||| ||||| | |||| ||| | ||||||||||||| ||||| ||||||||||||||||| |||||| || ||||||    
T  49516984 cataagcgtttatcatataaattgtttgtgtat-aagttatttctataacaaaagataaaataaagtcaaattgttttcatttaagct 49517070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 292
Target Start/End: Original strand, 4548685 - 4548715
Alignment:
Q  262 aaagataaaataaagtcaaactgtttttata 292  Q
    |||||||||||||||||||||||||||||||    
T  4548685 aaagataaaataaagtcaaactgtttttata 4548715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 295
Target Start/End: Original strand, 20713580 - 20713653
Alignment:
Q  222 ttatcgtataagtgtttatgttttaagttatttctatgacaaa-gataaaataaagtcaaactgtttttatataa 295  Q
    ||||||||||| ||||||||| | ||||||||||||| ||||  ||||| |||||||  ||||||||||||||||    
T  20713580 ttatcgtataaatgtttatgtat-aagttatttctataacaatcgataatataaagtacaactgtttttatataa 20713653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 288
Target Start/End: Complemental strand, 24502953 - 24502915
Alignment:
Q  250 tatttctatgacaaagataaaataaagtcaaactgtttt 288  Q
    ||||||||| |||||||||||||| ||||||||||||||    
T  24502953 tatttctataacaaagataaaatatagtcaaactgtttt 24502915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 33723301 - 33723387
Alignment:
Q  20 tgtttggatcgacttattagaacttatctactcacataagcacatgtgagattgtttggaagatcttataaaaacagctcattacat 106  Q
    ||||||||| |||||||| |||||||||||||  ||||| ||| ||||||| || |||| | | |||||  ||||||||||| ||||    
T  33723301 tgtttggattgacttatttgaacttatctactaccataaacacttgtgagactgcttgggaaaacttatggaaacagctcatgacat 33723387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 298
Target Start/End: Original strand, 38219868 - 38219910
Alignment:
Q  256 tatgacaaagataaaataaagtcaaactgtttttatataagct 298  Q
    ||||| |||||||||||||||||||| ||||||||||| ||||    
T  38219868 tatgaaaaagataaaataaagtcaaattgtttttatatgagct 38219910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 42556755 - 42556701
Alignment:
Q  245 taagttatttctatgacaaa-gataaaataaagtcaaactgtttttatataagct 298  Q
    |||||||||||||||||||| ||| ||||||| |||||||  |||||||||||||    
T  42556755 taagttatttctatgacaaaagatgaaataaaatcaaactacttttatataagct 42556701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 296
Target Start/End: Original strand, 43420222 - 43420256
Alignment:
Q  262 aaagataaaataaagtcaaactgtttttatataag 296  Q
    |||||||||||||||||||||| ||||||||||||    
T  43420222 aaagataaaataaagtcaaactttttttatataag 43420256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 298
Target Start/End: Complemental strand, 1879150 - 1879097
Alignment:
Q  246 aagttatttctatgaca-aagataaaataaagtcaaactgtttttatataagct 298  Q
    |||| |||||||| ||| ||||||||||||||||||| |||||| |||||||||    
T  1879150 aagtcatttctataacagaagataaaataaagtcaaaatgttttcatataagct 1879097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 5157221 - 5157148
Alignment:
Q  22 tttggatcgacttattagaacttatctactcacataagcacatgtgagattgtttggaagatcttataaaaaca 95  Q
    ||||||| |||||||| ||||||||||||  |||||| ||| ||||| | ||||||| ||| |||||| |||||    
T  5157221 tttggattgacttatttgaacttatctacggacataaacacttgtgaaactgtttgggagagcttatagaaaca 5157148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 27140417 - 27140485
Alignment:
Q  230 taagtgtttatgttttaagttatttctatgacaaa-gataaaataaagtcaaactgtttttatataagct 298  Q
    ||||||||||||| | ||||||||||||| ||||| ||||||||||  | ||| ||||||||||||||||    
T  27140417 taagtgtttatgtgt-aagttatttctataacaaaagataaaataatattaaattgtttttatataagct 27140485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 298
Target Start/End: Complemental strand, 28788641 - 28788608
Alignment:
Q  265 gataaaataaagtcaaactgtttttatataagct 298  Q
    |||||||||||||||||||||||| |||||||||    
T  28788641 gataaaataaagtcaaactgttttcatataagct 28788608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 29665943 - 29665890
Alignment:
Q  172 atgggcttgtatggataaatagcttagttaagcacttatagcataagcgtttat 225  Q
    |||| ||||| |||||||| |||||| |||| ||||||||||||||||| ||||    
T  29665943 atggccttgtttggataaacagcttaattaaacacttatagcataagcgcttat 29665890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 298
Target Start/End: Complemental strand, 44936713 - 44936660
Alignment:
Q  246 aagttatttctatgacaaa-gataaaataaagtcaaactgtttttatataagct 298  Q
    ||||||||||||| ||||| ||||| ||||||||||||| |||| |||||||||    
T  44936713 aagttatttctataacaaaagataagataaagtcaaactattttcatataagct 44936660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 296
Target Start/End: Original strand, 2152160 - 2152254
Alignment:
Q  200 taagcacttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgacaaagataaaataaagtcaaactgtttttatataag 296  Q
    ||||||| ||||||||||||| |||   |||||||| ||||| | |||| |||||||||||| |||||||  |||||| ||||| |||| |||||||    
T  2152160 taagcacctatagcataagcgattacaatataagtgcttatg-tataagctatttctatgac-aagataatgtaaagtgaaactattttaatataag 2152254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 298
Target Start/End: Original strand, 2522600 - 2522636
Alignment:
Q  262 aaagataaaataaagtcaaactgtttttatataagct 298  Q
    |||||||||||||||| |||||| |||||||||||||    
T  2522600 aaagataaaataaagttaaactgattttatataagct 2522636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 5090757 - 5090797
Alignment:
Q  183 tggataaatagcttagttaagcacttatagcataagcgttt 223  Q
    ||||||||||||||| ||||||||||| |||||||| ||||    
T  5090757 tggataaatagcttaattaagcacttaaagcataagagttt 5090797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 298
Target Start/End: Original strand, 6262703 - 6262739
Alignment:
Q  262 aaagataaaataaagtcaaactgtttttatataagct 298  Q
    ||||||||||| |||||||||| ||||||||||||||    
T  6262703 aaagataaaatcaagtcaaactatttttatataagct 6262739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 288
Target Start/End: Complemental strand, 14737829 - 14737785
Alignment:
Q  245 taagttatttctatgacaaa-gataaaataaagtcaaactgtttt 288  Q
    |||||||||||||| ||||| ||||||||||||||||| ||||||    
T  14737829 taagttatttctataacaaaagataaaataaagtcaaattgtttt 14737785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 288
Target Start/End: Original strand, 15437850 - 15437953
Alignment:
Q  185 gataaatagcttagttaagcacttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgac-aaagataaaataaagtcaaact 283  Q
    |||||| |||||||| | ||||||||||||  |||| ||||| | || ||||||||| |  ||| ||||||||| || ||| ||||||| ||||||||||    
T  15437850 gataaacagcttagtgaggcacttatagcactagcgattatcatctatgtgtttatg-taaaagctatttctataacaaaaaataaaattaagtcaaact 15437948  T
Q  284 gtttt 288  Q
    |||||    
T  15437949 gtttt 15437953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 296
Target Start/End: Original strand, 15488900 - 15488952
Alignment:
Q  245 taagttatttctatgacaaa-gataaaataaagtcaaactgtttttatataag 296  Q
    |||||| ||||||||| ||| ||||| ||||||||||||| ||||||||||||    
T  15488900 taagttgtttctatgataaaagataacataaagtcaaactatttttatataag 15488952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 298
Target Start/End: Original strand, 21002121 - 21002153
Alignment:
Q  266 ataaaataaagtcaaactgtttttatataagct 298  Q
    |||||||||||||||||||||||||| ||||||    
T  21002121 ataaaataaagtcaaactgtttttatgtaagct 21002153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 298
Target Start/End: Complemental strand, 27738286 - 27738250
Alignment:
Q  262 aaagataaaataaagtcaaactgtttttatataagct 298  Q
    |||||||||||||||||||| |||||| |||||||||    
T  27738286 aaagataaaataaagtcaaattgttttcatataagct 27738250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 298
Target Start/End: Original strand, 30257647 - 30257683
Alignment:
Q  262 aaagataaaataaagtcaaactgtttttatataagct 298  Q
    ||||||||||||||||||||||||||  |||||||||    
T  30257647 aaagataaaataaagtcaaactgtttccatataagct 30257683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 298
Target Start/End: Complemental strand, 44032148 - 44032069
Alignment:
Q  219 cgtttatcgtataagtgtttatgttttaagttatttctatgacaaa-gataaaataaagtcaaactgtttttatataagct 298  Q
    |||||||| ||||||||||||||| | |||   ||||||| ||||| | ||||||||||||||| |||||| |||||||||    
T  44032148 cgtttatcatataagtgtttatgtat-aagccgtttctataacaaaagctaaaataaagtcaaattgttttcatataagct 44032069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 296
Target Start/End: Original strand, 45107533 - 45107620
Alignment:
Q  208 tatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgacaaagataaaataaagtcaaactgtttttatataag 296  Q
    |||||||||| | | |||| |||||||| |||| | | ||| ||||||||| | ||| |||||||||||||||||| |||| |||||||    
T  45107533 tatagcataaacatctatcatataagtgcttatctat-aagctatttctataagaaaaataaaataaagtcaaactattttcatataag 45107620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 298
Target Start/End: Complemental strand, 46499960 - 46499924
Alignment:
Q  262 aaagataaaataaagtcaaactgtttttatataagct 298  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  46499960 aaagataaaataaagtcaaattgtttttatttaagct 46499924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 36)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 287
Target Start/End: Original strand, 32975865 - 32975967
Alignment:
Q  185 gataaatagcttagttaagcacttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgac-aaagataaaataaagtcaaact 283  Q
    |||||| | |||| ||||||  |||||||||||||| || || |||||||||||||| | |||||||||||| | || ||| ||||||||||||||||||    
T  32975865 gataaacaacttaattaagcgtttatagcataagcgcttctcatataagtgtttatg-tataagttatttctgtaacaaaatataaaataaagtcaaact 32975963  T
Q  284 gttt 287  Q
    ||||    
T  32975964 gttt 32975967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 186 - 295
Target Start/End: Original strand, 5328862 - 5328971
Alignment:
Q  186 ataaatagcttagttaagcacttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgacaaa-gataaaataaagtcaaactg 284  Q
    ||||| |||||| |||| ||| ||||||||||  | ||||| || ||||| ||| |||| ||||||||||||| ||||| ||||||||||||||||||      
T  5328862 ataaacagcttaattaaccacatatagcataaatgattatcataaaagtgcttacgttt-aagttatttctataacaaaagataaaataaagtcaaacca 5328960  T
Q  285 tttttatataa 295  Q
    |||||||||||    
T  5328961 tttttatataa 5328971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 287
Target Start/End: Original strand, 3155061 - 3155165
Alignment:
Q  183 tggataaatagcttagttaagcacttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgac-aaagataaaataaagtcaaa 281  Q
    |||||||| | |||| |||||| ||||||||||||||||||||| ||||| || ||||| | |||| ||| ||| | || |||||||||| |||||||||    
T  3155061 tggataaacaacttatttaagcgcttatagcataagcgtttatcatataaatggttatg-tataagctatctcttttacaaaagataaaacaaagtcaaa 3155159  T
Q  282 ctgttt 287  Q
    ||||||    
T  3155160 ctgttt 3155165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 199 - 298
Target Start/End: Complemental strand, 32386268 - 32386169
Alignment:
Q  199 ttaagcacttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgacaaa-gataaaataaagtcaaactgtttttatataagc 297  Q
    |||||||||||||| ||||  ||||||| |||||||| |||||| | ||| ||||||  | | ||| ||||||||||||| |||||||||||||||||||    
T  32386268 ttaagcacttatagtataaaagtttatcatataagtgcttatgtat-aagctatttcacttagaaaagataaaataaagtaaaactgtttttatataagc 32386170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 117
Target Start/End: Complemental strand, 32976095 - 32976032
Alignment:
Q  54 cataagcacatgtgagattgtttggaagatcttataaaaacagctcattacatttccataagct 117  Q
    |||||| || ||||||| ||||||||||| |||||| |||||||| || |||||||||||||||    
T  32976095 cataagtacttgtgagactgtttggaagagcttatagaaacagcttatgacatttccataagct 32976032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 298
Target Start/End: Original strand, 4006660 - 4006714
Alignment:
Q  245 taagttatttctatgacaaa-gataaaataaagtcaaactgtttttatataagct 298  Q
    |||| ||||||||| ||||| ||||||||||||||||| ||||||||||||||||    
T  4006660 taagatatttctataacaaatgataaaataaagtcaaattgtttttatataagct 4006714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 298
Target Start/End: Original strand, 21959607 - 21959728
Alignment:
Q  177 cttgtatggataaatagcttagttaagcacttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgac-aaagataaaataaa 275  Q
    ||||| || ||||||||||||  ||||||||| |||||||||| |||||| || ||||| ||| | | |||| |||||| || || ||||||||||||||    
T  21959607 cttgtttgcataaatagcttacgtaagcacttttagcataagcctttatcatagaagtgcttaag-tataagctatttccataacaaaagataaaataaa 21959705  T
Q  276 gtcaaactgtttttatataagct 298  Q
    |||||  |||||  |||||||||    
T  21959706 gtcaatttgtttgcatataagct 21959728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 133
Target Start/End: Complemental strand, 27857486 - 27857396
Alignment:
Q  43 ttatctactcacataagcacatgtgagattgtttggaagatcttataaaaacagctcattacatttccataagctctccaggatagcttat 133  Q
    ||||||||| |||||  ||| ||||| | ||||||| ||| ||||| |||||| || || |||| ||||||||||||||| ||||||||||    
T  27857486 ttatctactgacatagacacttgtgaaactgtttgggagagcttatgaaaacaacttatgacatctccataagctctccatgatagcttat 27857396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 288
Target Start/End: Complemental strand, 34429859 - 34429770
Alignment:
Q  199 ttaagcacttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgacaa-agataaaataaagtcaaactgtttt 288  Q
    |||| ||||||||||||||| |||||| |||  |||| |||||| | ||||||||||||| | || ||||||||||||||| |||||||||    
T  34429859 ttaatcacttatagcataagtgtttattgtactagtgattatgtat-aagttatttctataataagagataaaataaagtctaactgtttt 34429770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 298
Target Start/End: Original strand, 2206498 - 2206590
Alignment:
Q  206 cttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgacaaa-gataaaataaagtcaaactgtttttatataagct 298  Q
    ||||||||||||||  ||||||||||||  ||| ||| | ||||||||| ||| ||||| |||||||||||||  || ||||||||||||||||    
T  2206498 cttatagcataagctcttatcgtataagcatttctgtat-aagttatttttataacaaaagataaaataaagtataattgtttttatataagct 2206590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 298
Target Start/End: Original strand, 22742278 - 22742366
Alignment:
Q  210 tagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgacaaag-ataaaataaagtcaaactgtttttatataagct 298  Q
    ||||||||||| |||||||||||||  |||| | | ||| ||||| ||| |||||| |||||||||||||||| |||||| |||||||||    
T  22742278 tagcataagcgcttatcgtataagttcttatctat-aagctatttgtataacaaaggataaaataaagtcaaattgttttcatataagct 22742366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 238
Target Start/End: Complemental strand, 24330058 - 24330013
Alignment:
Q  193 gcttagttaagcacttatagcataagcgtttatcgtataagtgttt 238  Q
    ||||| ||||||||||||||||||| | ||||||||||||||||||    
T  24330058 gcttaattaagcacttatagcataaacatttatcgtataagtgttt 24330013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 298
Target Start/End: Original strand, 32513771 - 32513824
Alignment:
Q  245 taagttatttctatgacaaagataaaataaagtcaaactgtttttatataagct 298  Q
    |||||||||||||| ||||| |||||||||||||||||| |||  |||||||||    
T  32513771 taagttatttctataacaaaaataaaataaagtcaaactatttccatataagct 32513824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 297
Target Start/End: Complemental strand, 9833283 - 9833168
Alignment:
Q  182 atggataaatagcttagttaagcacttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgacaa-agataaaataaagtcaa 280  Q
    ||||||||| | |||| |||||   ||||| |||||||||||||| |||||||| || | | | ||| ||||||||| |||| | |||||||||||||||    
T  9833283 atggataaacaacttaattaagtgtttataacataagcgtttatcatataagtgcttctctat-aagatatttctattacaataaataaaataaagtcaa 9833185  T
Q  281 actgtttttatataagc 297  Q
    ||||||||  |||||||    
T  9833184 actgttttcttataagc 9833168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 34538159 - 34538215
Alignment:
Q  42 cttatctactcacataagcacatgtgagattgtttggaagatcttataaaaacagct 98  Q
    |||||||||||| |||||||| ||||||| | ||||  |||||||||||||||||||    
T  34538159 cttatctactcatataagcacttgtgagactatttgagagatcttataaaaacagct 34538215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 296
Target Start/End: Complemental strand, 8349838 - 8349736
Alignment:
Q  194 cttagttaagcacttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgac-aaagataaaataaagtcaaactgtttttata 292  Q
    |||| |||||| |||||||||||| |  ||||| ||||||||||| || | |||  ||||||| | || |||||||||||||||| ||| ||||||||||    
T  8349838 cttaattaagcgcttatagcataaccacttatcatataagtgtttgtg-tataaactatttctctaacaaaagataaaataaagttaaattgtttttata 8349740  T
Q  293 taag 296  Q
    ||||    
T  8349739 taag 8349736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 288
Target Start/End: Complemental strand, 31672630 - 31672548
Alignment:
Q  206 cttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgacaaaga-taaaataaagtcaaactgtttt 288  Q
    |||||||| |||||| ||||| || |||||||||||| | || | ||||| |||||||| | ||||||||||||||||||||||    
T  31672630 cttatagcttaagcgattatcatacaagtgtttatgtataaact-atttccatgacaaaaaataaaataaagtcaaactgtttt 31672548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 114
Target Start/End: Complemental strand, 33385661 - 33385586
Alignment:
Q  39 gaacttatctactcacataagcacatgtgagattgtttggaagatcttataaaaacagctcattacatttccataa 114  Q
    ||||||||||||| | |||||||| ||||| | |||||||||||  ||||  ||||||||||| |||| |||||||    
T  33385661 gaacttatctactgatataagcacttgtgaaactgtttggaagagtttatggaaacagctcatgacatgtccataa 33385586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 296
Target Start/End: Original strand, 10154185 - 10154219
Alignment:
Q  262 aaagataaaataaagtcaaactgtttttatataag 296  Q
    ||||||||||||||||||||||||||| |||||||    
T  10154185 aaagataaaataaagtcaaactgttttcatataag 10154219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 296
Target Start/End: Original strand, 31420867 - 31420956
Alignment:
Q  207 ttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgacaaa-gataaaataaagtcaaactgtttttatataag 296  Q
    ||||||||||| | |||||  ||||||||||||| || |||| ||||||||| | ||| | ||||||||| ||||||| ||||||||||||    
T  31420867 ttatagcataatcatttattatataagtgtttat-ttataagctatttctataataaatggtaaaataaaatcaaactatttttatataag 31420956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 288
Target Start/End: Complemental strand, 33068722 - 33068641
Alignment:
Q  207 ttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgacaaa-gataaaataaagtcaaactgtttt 288  Q
    |||||||||||||| |||||  |||| || |||||| | ||||||||||||| ||||| ||||||||||  ||||||||||||    
T  33068722 ttatagcataagcgcttatcaaataaatgcttatgtat-aagttatttctataacaaaagataaaataatatcaaactgtttt 33068641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 296
Target Start/End: Original strand, 9027542 - 9027575
Alignment:
Q  263 aagataaaataaagtcaaactgtttttatataag 296  Q
    |||||||||||||||||||||||||| |||||||    
T  9027542 aagataaaataaagtcaaactgttttaatataag 9027575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 298
Target Start/End: Original strand, 9326923 - 9326956
Alignment:
Q  265 gataaaataaagtcaaactgtttttatataagct 298  Q
    |||| |||||||||||||||||||||||||||||    
T  9326923 gatataataaagtcaaactgtttttatataagct 9326956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 298
Target Start/End: Complemental strand, 10452534 - 10452430
Alignment:
Q  194 cttagttaagcacttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgac-aaagataaaataaagtcaaactgtttttata 292  Q
    |||| |||||| ||||||||||||| |  |||| ||| |||| ||||| | |||| ||||||||| || ||| |||||||||| ||||||| |||| |||    
T  10452534 cttaattaagctcttatagcataagtggctatcatatcagtgcttatg-tataagctatttctataacaaaatataaaataaaatcaaactattttcata 10452436  T
Q  293 taagct 298  Q
    ||||||    
T  10452435 taagct 10452430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 288
Target Start/End: Complemental strand, 24836339 - 24836279
Alignment:
Q  228 tataagtgtttatgttttaagttatttctatgacaaa-gataaaataaagtcaaactgtttt 288  Q
    ||||||| ||||||| | ||||||||||||| ||||| ||||||||||||||||| ||||||    
T  24836339 tataagtatttatgtat-aagttatttctataacaaaagataaaataaagtcaaattgtttt 24836279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 89
Target Start/End: Original strand, 24973958 - 24974015
Alignment:
Q  32 cttattagaacttatctactcacataagcacatgtgagattgtttggaagatcttata 89  Q
    |||||| |||||||||| || |||||||||| ||| ||||||||||| ||| ||||||    
T  24973958 cttatttgaacttatctgctgacataagcacttgtaagattgtttggtagagcttata 24974015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 32578014 - 32578059
Alignment:
Q  105 atttccataagctctccaggatagcttatatcaaaacaatttgact 150  Q
    ||||||||| ||||| ||||||||||||||| | ||||||||||||    
T  32578014 atttccatatgctcttcaggatagcttatatgagaacaatttgact 32578059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 298
Target Start/End: Complemental strand, 281996 - 281918
Alignment:
Q  224 atcgtataagtgtttatgttt---taagttatttctatgacaaa-gataaaataaagtcaaactgtttttatataagct 298  Q
    ||||||||||||||||||| |   |||| |||| |||| ||||| ||||||||||||||||  |||||| |||||||||    
T  281996 atcgtataagtgtttatgtatctataagctattcctataacaaaagataaaataaagtcaacttgttttcatataagct 281918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 114
Target Start/End: Complemental strand, 283216 - 283152
Alignment:
Q  50 ctcacataagcacatgtgagattgtttggaagatcttataaaaacagctcattacatttccataa 114  Q
    ||||||||||||| ||||| | |||||||| || | ||||||||||||| || |||| |||||||    
T  283216 ctcacataagcacttgtgaaactgtttggaggaacgtataaaaacagcttatgacatgtccataa 283152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 298
Target Start/End: Complemental strand, 3204648 - 3204612
Alignment:
Q  262 aaagataaaataaagtcaaactgtttttatataagct 298  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  3204648 aaagataaaataaagtcgaactgttttcatataagct 3204612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 132
Target Start/End: Complemental strand, 4249049 - 4248973
Alignment:
Q  56 taagcacatgtgagattgtttggaagatcttataaaaacagctcattacatttccataagctctccaggatagctta 132  Q
    ||||||| ||||| ||||||| ||||| ||||| |||||| || ||  ||| ||||||||||||||  |||||||||    
T  4249049 taagcacttgtgaaattgttttgaagagcttatgaaaacaccttatggcatgtccataagctctccgagatagctta 4248973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 298
Target Start/End: Original strand, 4420609 - 4420645
Alignment:
Q  262 aaagataaaataaagtcaaactgtttttatataagct 298  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  4420609 aaagataaaataaagtcaaactatttttgtataagct 4420645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 298
Target Start/End: Original strand, 7713989 - 7714025
Alignment:
Q  262 aaagataaaataaagtcaaactgtttttatataagct 298  Q
    |||||||||||||||||||| |||||| |||||||||    
T  7713989 aaagataaaataaagtcaaattgttttcatataagct 7714025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 298
Target Start/End: Complemental strand, 7785848 - 7785812
Alignment:
Q  262 aaagataaaataaagtcaaactgtttttatataagct 298  Q
    |||||||||||||||||||||| |||| |||||||||    
T  7785848 aaagataaaataaagtcaaactcttttcatataagct 7785812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 11393831 - 11393875
Alignment:
Q  243 tttaagttatttctatgacaaagataaaataaagtcaaactgttt 287  Q
    |||||||||||| ||||  |||||||||||||| |||||||||||    
T  11393831 tttaagttatttttatgcaaaagataaaataaaatcaaactgttt 11393875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 298
Target Start/End: Complemental strand, 29274335 - 29274299
Alignment:
Q  262 aaagataaaataaagtcaaactgtttttatataagct 298  Q
    |||||||||||||||||||| |||||| |||||||||    
T  29274335 aaagataaaataaagtcaaattgttttcatataagct 29274299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 206 - 295
Target Start/End: Original strand, 27484 - 27573
Alignment:
Q  206 cttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgaca-aagataaaataaagtcaaactgtttttatataa 295  Q
    ||||||||||||||  ||||| | |||||| |||||| | ||||||||||||| ||| ||||||||||||||||||| |||||| ||||||    
T  27484 cttatagcataagctcttatcatgtaagtgcttatgtat-aagttatttctataacagaagataaaataaagtcaaattgttttcatataa 27573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 38)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 185 - 282
Target Start/End: Original strand, 34563137 - 34563234
Alignment:
Q  185 gataaatagcttagttaagcacttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgacaaa-gataaaataaagtcaaac 282  Q
    |||||| | |||| |||| | |||||||||||| | |||||| |||||||| |||| | | ||||||||||||||||||| ||||||||||||||||||    
T  34563137 gataaacaacttaattaaacgcttatagcataaacatttatcatataagtgcttatatat-aagttatttctatgacaaaggataaaataaagtcaaac 34563234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 37353091 - 37353153
Alignment:
Q  20 tgtttggatcgacttattagaacttatctactcacataagcacatgtgagattgtttggaaga 82  Q
    |||||||||||||||||  |||| |||||||| |||||||||| ||||||| |||||||||||    
T  37353091 tgtttggatcgacttatctgaacctatctactgacataagcacttgtgagactgtttggaaga 37353153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 186 - 285
Target Start/End: Complemental strand, 39392843 - 39392744
Alignment:
Q  186 ataaatagcttagttaagcacttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgac-aaagataaaataaagtcaaactg 284  Q
    ||||||| |||| ||||||| |||||||||||| | ||||| ||||||||  |||| | |||  ||||||||| || |||||||||||||||||||||||    
T  39392843 ataaataacttaattaagcatttatagcataagtgcttatcatataagtggctatg-tataaactatttctataacaaaagataaaataaagtcaaactg 39392745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 4560652 - 4560585
Alignment:
Q  21 gtttggatcgacttattagaacttatctactcacataagcacatgtgagattgtttggaagatcttat 88  Q
    |||||||| |||||||| || |||||||| | |||||||||| |||||| |||||||||||| |||||    
T  4560652 gtttggattgacttatttgagcttatctattgacataagcacttgtgaggttgtttggaagaacttat 4560585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 298
Target Start/End: Complemental strand, 787289 - 787176
Alignment:
Q  185 gataaatagcttagttaagcacttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgaca-aagataaaataaagtcaaact 283  Q
    |||||||| || | |||||||||||||||||||  ||||||| | |||||| |||||||| ||| | ||||  | ||| ||||||||||||||||||| |    
T  787289 gataaataactcaattaagcacttatagcataaatgtttatcatctaagtgcttatgttt-aagctgtttccgtaacataagataaaataaagtcaaatt 787191  T
Q  284 gtttttatataagct 298  Q
    ||| | |||||||||    
T  787190 gttatcatataagct 787176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 96
Target Start/End: Original strand, 2364385 - 2364455
Alignment:
Q  26 gatcgacttattagaacttatctactcacataagcacatgtgagattgtttggaagatcttataaaaacag 96  Q
    |||||||||||| |||||||||| || ||||||| || ||||||| |||||||||||  |||| |||||||    
T  2364385 gatcgacttatttgaacttatcttctgacataagtacttgtgagactgtttggaagagattatgaaaacag 2364455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 133
Target Start/End: Complemental strand, 10488614 - 10488501
Alignment:
Q  20 tgtttggatcgacttattagaacttatctactcacataagcacatgtgagattgtttggaagatcttataaaaacagctcattacatttccataagctct 119  Q
    ||||||||| | |||||| || |||||| ||| |||||| ||||||||||| |||| |||||| | || | |||||||| ||  |||  ||||||||||     
T  10488614 tgtttggattggcttatttgagcttatcaactaacataaacacatgtgagactgttcggaagagcatacagaaacagcttatggcatgaccataagctca 10488515  T
Q  120 ccaggatagcttat 133  Q
    ||||||||| ||||    
T  10488514 ccaggatagtttat 10488501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 13652344 - 13652299
Alignment:
Q  43 ttatctactcacataagcacatgtgagattgtttggaagatcttat 88  Q
    |||||||||||||||||||| |||||| |||||||||||| |||||    
T  13652344 ttatctactcacataagcacttgtgaggttgtttggaagagcttat 13652299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 13710987 - 13710942
Alignment:
Q  43 ttatctactcacataagcacatgtgagattgtttggaagatcttat 88  Q
    |||||||||||||||||||| |||||| |||||||||||| |||||    
T  13710987 ttatctactcacataagcacttgtgaggttgtttggaagagcttat 13710942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 289
Target Start/End: Complemental strand, 40728542 - 40728497
Alignment:
Q  245 taagttatttctatgacaaa-gataaaataaagtcaaactgttttt 289  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||    
T  40728542 taagttatttctataacaaaagataaaataaagtcaaactgttttt 40728497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 132
Target Start/End: Complemental strand, 4764045 - 4763933
Alignment:
Q  20 tgtttggatcgacttattagaacttatctactcacataagcacatgtgagattgtttggaagatcttataaaaacagctcattacatttccataagctct 119  Q
    ||||||||| |||||||| ||||||||| |||  ||||||||| | ||||| | |||   ||| ||| | |||||| || || |||| ||||||||||||    
T  4764045 tgtttggattgacttatttgaacttatccactagcataagcacctatgagactatttaagagagcttttgaaaacatctaatgacatgtccataagctct 4763946  T
Q  120 ccaggatagctta 132  Q
     ||||||||||||    
T  4763945 tcaggatagctta 4763933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 295
Target Start/End: Complemental strand, 41336837 - 41336718
Alignment:
Q  176 gcttgtatggataaatagcttagttaagcacttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgac-aaagataaaataa 274  Q
    |||||| |||||||| | |||| ||||   |||||||||||||||||||||  |||| || ||||| | ||| | |||| |||||| ||||||||||||     
T  41336837 gcttgtttggataaacaacttaattaattgcttatagcataagcgtttatcaaataaatgcttatg-tataaatcatttttatgacaaaagataaaatat 41336739  T
Q  275 agtcaaactgtttttatataa 295  Q
    ||||||| |||||| ||||||    
T  41336738 agtcaaattgttttcatataa 41336718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 294
Target Start/End: Original strand, 4558672 - 4558794
Alignment:
Q  172 atgggcttgtatggataaatagcttagttaagcacttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatga-caaagataaa 270  Q
    |||| ||||| |||||||| | |||| ||| || |||||||||||| |||||||  | |||||||||||| | |||| ||||||||| |  |||||||||    
T  4558672 atggtcttgtttggataaacaacttaattacgcgcttatagcataaacgtttattatgtaagtgtttatg-tataagctatttctataataaaagataaa 4558770  T
Q  271 ataaagtcaaactgtttttatata 294  Q
    ||||||| ||| | |||| |||||    
T  4558771 ataaagttaaattattttcatata 4558794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 34771021 - 34770906
Alignment:
Q  18 catgtttggatcgacttattagaacttatctactcacataagcacatgtgagattgtttggaagatcttataaaaacagctcattacatttccataagct 117  Q
    ||||||||| | |||||||| ||  |||||| ||  ||||||||| ||||| | ||||||  ||||| ||| ||||||||| || |||| ||||| | ||    
T  34771021 catgtttggtttgacttatttgagtttatctgctagcataagcacttgtgaaactgtttgagagatcctatgaaaacagcttatgacatgtccatgaact 34770922  T
Q  118 ctccaggatagcttat 133  Q
    ||| ||||||||||||    
T  34770921 ctctaggatagcttat 34770906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 298
Target Start/End: Original strand, 37461060 - 37461142
Alignment:
Q  215 taagcgtttatcgtataagtgtttatgttttaagttatttctatgacaaagataaaataaagtcaaactgtttttatataagct 298  Q
    ||||| |||||| ||| ||||||||||| | ||||||||||||  ||||||   |||||| ||||||||||| |||||||||||    
T  37461060 taagcctttatcatatgagtgtttatgtgt-aagttatttctacaacaaaggctaaataacgtcaaactgttattatataagct 37461142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 296
Target Start/End: Complemental strand, 8066947 - 8066913
Alignment:
Q  262 aaagataaaataaagtcaaactgtttttatataag 296  Q
    ||||||||||||||||||||||| |||||||||||    
T  8066947 aaagataaaataaagtcaaactggttttatataag 8066913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 292
Target Start/End: Original strand, 20672736 - 20672766
Alignment:
Q  262 aaagataaaataaagtcaaactgtttttata 292  Q
    |||||||||||||||||||||||||||||||    
T  20672736 aaagataaaataaagtcaaactgtttttata 20672766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 298
Target Start/End: Original strand, 28468300 - 28468389
Alignment:
Q  209 atagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgacaaa-gataaaataaagtcaaactgtttttatataagct 298  Q
    ||||||||| | |||||| ||||| |||| ||||   ||||||||||| ||||||| ||||||||||||| |||||||| || ||||||||    
T  28468300 atagcataaacatttatcttataattgttcatgtaa-aagttatttctttgacaaaagataaaataaagtgaaactgttcttttataagct 28468389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 34788551 - 34788497
Alignment:
Q  245 taagttatttctatgac-aaagataaaataaagtcaaactgtttttatataagct 298  Q
    |||| ||||| |||||| ||||||||||||||||||||||||||  |||||||||    
T  34788551 taagctatttttatgaccaaagataaaataaagtcaaactgtttccatataagct 34788497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 2487925 - 2488002
Alignment:
Q  18 catgtttggatcgacttattagaacttatctactcacataagcacatgtgagattgtttggaagatcttataaaaaca 95  Q
    ||||||||||| | |||||| ||  | ||||||| |||||||||| ||||||| ||||||| ||| ||||| ||||||    
T  2487925 catgtttggattggcttatttgagttcatctactgacataagcacttgtgagactgtttgggagaacttatgaaaaca 2488002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 6509425 - 6509373
Alignment:
Q  245 taagttatttctatgacaaagataaaataaagtcaaactgtttttatataagct 298  Q
    |||||||| ||||| |||| ||||||||||||||||| ||| ||||||||||||    
T  6509425 taagttatatctataacaa-gataaaataaagtcaaattgtatttatataagct 6509373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 12225023 - 12224974
Alignment:
Q  245 taagttatttctatgacaaa-gataaaataaagtcaaactgtttttatat 293  Q
    ||||||||||||| |||||| ||||||||||||||||||| |||| ||||    
T  12225023 taagttatttctaagacaaaagataaaataaagtcaaactattttcatat 12224974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 298
Target Start/End: Original strand, 12972752 - 12972856
Alignment:
Q  194 cttagttaagcacttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgaca-aagataaaataaagtcaaactgtttttata 292  Q
    |||| |||||| |||||||||||||| |||||| |||||||| ||||| | |||| |||||| || ||| ||||| ||||||| | |||||| ||| ||     
T  12972752 cttaattaagcgcttatagcataagcatttatcatataagtgcttatg-tataagctatttcaataacagaagatgaaataaaattaaactggtttcatg 12972850  T
Q  293 taagct 298  Q
    ||||||    
T  12972851 taagct 12972856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 294
Target Start/End: Original strand, 26479742 - 26479775
Alignment:
Q  261 caaagataaaataaagtcaaactgtttttatata 294  Q
    ||||||||||||||| ||||||||||||||||||    
T  26479742 caaagataaaataaaatcaaactgtttttatata 26479775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 286
Target Start/End: Original strand, 29699150 - 29699242
Alignment:
Q  194 cttagttaagcacttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgacaaa-gataaaataaagtcaaactgtt 286  Q
    ||||||||||  ||||||||||||   |||||| ||||| || ||||||   ||||||||||||| ||||| ||||||||||||||||| ||||    
T  29699150 cttagttaagtgcttatagcataaatatttatcatataaatgcttatgtac-aagttatttctataacaaaagataaaataaagtcaaaatgtt 29699242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 264
Target Start/End: Original strand, 31884495 - 31884559
Alignment:
Q  199 ttaagcacttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgacaaa 264  Q
    |||||||||||||||||||||| ||||| || |||||  |||| | |||||||||||||| |||||    
T  31884495 ttaagcacttatagcataagcgcttatcatacaagtgcatatg-tataagttatttctataacaaa 31884559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 98
Target Start/End: Original strand, 31884872 - 31884937
Alignment:
Q  33 ttattagaacttatctactcacataagcacatgtgagattgtttggaagatcttataaaaacagct 98  Q
    ||||| || ||||||||||  ||||||||| ||||||| ||||||| | | |||||||||||||||    
T  31884872 ttatttgagcttatctactagcataagcacttgtgagagtgtttgggaaaacttataaaaacagct 31884937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 132
Target Start/End: Original strand, 31915235 - 31915324
Alignment:
Q  43 ttatctactcacataagcacatgtgagattgtttggaagatcttataaaaacagctcattacatttccataagctctccaggatagctta 132  Q
    ||||||| ||||||||  || ||||||| ||||||  | | |||||| ||||| || || |||  |||||||||||||||||||||||||    
T  31915235 ttatctattcacataaatacttgtgagactgtttgagaaagcttatacaaacaacttatgacaagtccataagctctccaggatagctta 31915324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 2482817 - 2482865
Alignment:
Q  250 tatttctatgacaaagataaaataaagtcaaactgtttttatataagct 298  Q
    ||||||||| |  ||||||||||||||||||| ||||||| ||||||||    
T  2482817 tatttctattaacaagataaaataaagtcaaaatgtttttgtataagct 2482865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 298
Target Start/End: Original strand, 8629025 - 8629107
Alignment:
Q  214 ataagcgtttatcgtataagtgtttatgttttaagttatttctatgacaaagataaaataaagtcaaactgtttttatataagct 298  Q
    ||||| ||||||| |||||||| |||| || |||| ||||||||| ||||| |||||||  ||| ||| ||||||||||||||||    
T  8629025 ataagtgtttatcatataagtgcttat-ttataagctatttctataacaaa-ataaaattgagttaaaatgtttttatataagct 8629107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 298
Target Start/End: Original strand, 10437849 - 10437884
Alignment:
Q  262 aaagataaaataaagtcaaactgtttttatataagct 298  Q
    ||||||||||||||||||||||| |||||||||||||    
T  10437849 aaagataaaataaagtcaaactg-ttttatataagct 10437884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 10488404 - 10488436
Alignment:
Q  210 tagcataagcgtttatcgtataagtgtttatgt 242  Q
    ||||||||||||||||| |||||||||||||||    
T  10488404 tagcataagcgtttatcatataagtgtttatgt 10488436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 289
Target Start/End: Original strand, 14482110 - 14482193
Alignment:
Q  206 cttatagcataagcgtttatcgtataagtgtttatgttttaagttatttctatgacaaa-gataaaataaagtcaaactgttttt 289  Q
    |||||||||| || | ||||| |||||||| |||||| | || | |||||||| ||||| ||||||||||||||||| |||||||    
T  14482110 cttatagcattagtgcttatcatataagtgcttatgtataaact-atttctataacaaaagataaaataaagtcaaattgttttt 14482193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 288
Target Start/End: Original strand, 26820145 - 26820189
Alignment:
Q  245 taagttatttctatgacaaa-gataaaataaagtcaaactgtttt 288  Q
    |||||||||||||| ||||| ||||||||||||||||||| ||||    
T  26820145 taagttatttctataacaaaagataaaataaagtcaaactatttt 26820189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 300
Target Start/End: Original strand, 38874569 - 38874648
Alignment:
Q  221 tttatcgtataagtgtttatgttttaagttatttctatgac-aaagataaaataaagtcaaactgtttttatataagctct 300  Q
    ||||||||||||||||||||| | |||||| ||||| | || |||||||||||  ||||||| | |||| |||||||||||    
T  38874569 tttatcgtataagtgtttatg-tataagttgtttctgtaactaaagataaaatcgagtcaaattcttttcatataagctct 38874648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 39881650 - 39881702
Alignment:
Q  30 gacttattagaacttatctactcacataagcacatgtgagattgtttggaaga 82  Q
    |||||||| ||||||||||| |  ||||| ||| |||||||||||||||||||    
T  39881650 gacttatttgaacttatctattggcataaacacttgtgagattgtttggaaga 39881702  T

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Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 98
Target Start/End: Original strand, 43208085 - 43208153
Alignment:
Q  30 gacttattagaacttatctactcacataagcacatgtgagattgtttggaagatcttataaaaacagct 98  Q
    |||||||| ||||||||||||| |||||  |||   ||||| |||||| |||| |||||||||||||||    
T  43208085 gacttatttgaacttatctactgacatacacactactgagactgtttgaaagagcttataaaaacagct 43208153  T

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Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 298
Target Start/End: Original strand, 45071166 - 45071202
Alignment:
Q  262 aaagataaaataaagtcaaactgtttttatataagct 298  Q
    ||||| |||||||||||||| ||||||||||||||||    
T  45071166 aaagacaaaataaagtcaaattgtttttatataagct 45071202  T

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Target: scaffold0004 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 298
Target Start/End: Original strand, 375240 - 375292
Alignment:
Q  245 taagttatttctatgacaaagataaaataaagtcaaactgtttttatataagct 298  Q
    ||||||||||||| ||||| |||||||||||||| ||||||||| || ||||||    
T  375240 taagttatttctacgacaa-gataaaataaagtctaactgttttaatgtaagct 375292  T

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